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Volumn 72, Issue 1, 2008, Pages 82-90

Rapid lab-on-a-chip profiling of human gut bacteria

Author keywords

Gut cocktail; Human gut microbiota; Lab on a chip (LOC); Length heterogeneity PCR (LH PCR); Microbiome

Indexed keywords

ANTIBIOTIC AGENT; CLINDAMYCIN; DNA; GENOMIC DNA; RNA 16S;

EID: 37349020196     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2007.10.011     Document Type: Article
Times cited : (14)

References (28)
  • 2
    • 0034126848 scopus 로고    scopus 로고
    • Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
    • Bernhard A.E., and Field K.G. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol. 66 (2000) 1587-1594
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1587-1594
    • Bernhard, A.E.1    Field, K.G.2
  • 3
    • 13844306978 scopus 로고    scopus 로고
    • Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries
    • Bernhard A.E., Colbert D., McManus J., and Field K.G. Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries. FEMS Microbiol. Ecol. 52 (2005) 115-128
    • (2005) FEMS Microbiol. Ecol. , vol.52 , pp. 115-128
    • Bernhard, A.E.1    Colbert, D.2    McManus, J.3    Field, K.G.4
  • 4
    • 33947186284 scopus 로고    scopus 로고
    • Metabolic diversity of the intestinal microbiota: implications for health and disease
    • Blaut M., and Clavel T. Metabolic diversity of the intestinal microbiota: implications for health and disease. J. Nutr. 137 (2007) 751-755
    • (2007) J. Nutr. , vol.137 , pp. 751-755
    • Blaut, M.1    Clavel, T.2
  • 5
    • 33645017452 scopus 로고    scopus 로고
    • Usefulness of length heterogeneity-PCR for monitoring lactic acid bacteria succession during maize ensiling
    • Brusetti L., Borin S., Mora D., Rizzi A., Raddadi N., Sorlini C., and Daffonchio D. Usefulness of length heterogeneity-PCR for monitoring lactic acid bacteria succession during maize ensiling. FEMS Microbiol. Ecol. 56 (2006) 154-164
    • (2006) FEMS Microbiol. Ecol. , vol.56 , pp. 154-164
    • Brusetti, L.1    Borin, S.2    Mora, D.3    Rizzi, A.4    Raddadi, N.5    Sorlini, C.6    Daffonchio, D.7
  • 7
    • 33846138032 scopus 로고    scopus 로고
    • The role of microbes in Crohn's disease
    • Eckburg P.B., and Relman D.A. The role of microbes in Crohn's disease. Clin. Infect. Dis. 44 (2007) 256-262
    • (2007) Clin. Infect. Dis. , vol.44 , pp. 256-262
    • Eckburg, P.B.1    Relman, D.A.2
  • 9
    • 0037425743 scopus 로고    scopus 로고
    • Gut flora in health and disease
    • Guarner F., and Malagelada J.R. Gut flora in health and disease. Lancet 361 (2003) 512-519
    • (2003) Lancet , vol.361 , pp. 512-519
    • Guarner, F.1    Malagelada, J.R.2
  • 10
    • 27544510614 scopus 로고    scopus 로고
    • Computing recombination networks from binary sequences
    • Huson D.H., and Kloepper T.H. Computing recombination networks from binary sequences. Bioinformatics 21 Suppl 2 (2005) 159-165
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2 , pp. 159-165
    • Huson, D.H.1    Kloepper, T.H.2
  • 11
    • 12244292700 scopus 로고    scopus 로고
    • Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism
    • Jernberg C., Sullivan A., Edlund C., and Jansson J.K. Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism. Appl. Environ. Microbiol. 71 (2005) 501-506
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 501-506
    • Jernberg, C.1    Sullivan, A.2    Edlund, C.3    Jansson, J.K.4
  • 12
    • 34248152283 scopus 로고    scopus 로고
    • Long-term ecological impacts of antibiotic administration on the human intestinal microbiota
    • Jernberg C., Löfmark S., Edlund C., and Jansson J.K. Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. ISME Journal 1 (2007) 56-66
    • (2007) ISME Journal , vol.1 , pp. 56-66
    • Jernberg, C.1    Löfmark, S.2    Edlund, C.3    Jansson, J.K.4
  • 13
    • 0344629203 scopus 로고    scopus 로고
    • Bias and artifacts in multitemplate polymerase chain reactions (PCR)
    • Kanagawa T. Bias and artifacts in multitemplate polymerase chain reactions (PCR). J. Biosci. Bioeng. 96 (2003) 317-323
    • (2003) J. Biosci. Bioeng. , vol.96 , pp. 317-323
    • Kanagawa, T.1
  • 15
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E., and Godfellow M. (Eds), Wiley, New York
    • Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Godfellow M. (Eds). Nucleic acid Techniques in Bacterial Systematics (1991), Wiley, New York 115-175
    • (1991) Nucleic acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 16
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: human gut microbes associated with obesity
    • Ley R.E., Turnbaugh P.J., Klein S., and Gordon J.I. Microbial ecology: human gut microbes associated with obesity. Nature 444 (2006) 1022-1023
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 17
    • 15044353954 scopus 로고    scopus 로고
    • Environmental microbiology-on-a-chip and its future impacts
    • Liu W.T., and Zhu L. Environmental microbiology-on-a-chip and its future impacts. Trends Biotechnol. 23 (2005) 174-179
    • (2005) Trends Biotechnol. , vol.23 , pp. 174-179
    • Liu, W.T.1    Zhu, L.2
  • 18
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu W.T., Marsh T.L., Cheng H., and Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63 (1997) 4516-4522
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 19
    • 27844490459 scopus 로고    scopus 로고
    • Molecular analysis of a consortium of ruminal microbes that detoxify pyrrolizidine alkaloids
    • Lodge-Ivey S.L., Rappe M.S., Johnston W.H., Bohlken R.E., and Craig A.M. Molecular analysis of a consortium of ruminal microbes that detoxify pyrrolizidine alkaloids. Can. J. Microbiol. 51 (2005) 455-465
    • (2005) Can. J. Microbiol. , vol.51 , pp. 455-465
    • Lodge-Ivey, S.L.1    Rappe, M.S.2    Johnston, W.H.3    Bohlken, R.E.4    Craig, A.M.5
  • 20
    • 33845349674 scopus 로고    scopus 로고
    • Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes
    • Löfmark S., Jernberg C., Jansson J.K., and Edlund C. Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes. J. Antimicrob. Chemother. 58 (2006) 1160-1167
    • (2006) J. Antimicrob. Chemother. , vol.58 , pp. 1160-1167
    • Löfmark, S.1    Jernberg, C.2    Jansson, J.K.3    Edlund, C.4
  • 21
    • 0037728516 scopus 로고    scopus 로고
    • A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils
    • Mills D.K., Fitzgerald K., Litchfield C.D., and Gillevet P.M. A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils. J. Microbiol. Methods 54 (2003) 57-74
    • (2003) J. Microbiol. Methods , vol.54 , pp. 57-74
    • Mills, D.K.1    Fitzgerald, K.2    Litchfield, C.D.3    Gillevet, P.M.4
  • 23
    • 0034126356 scopus 로고    scopus 로고
    • Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil
    • Ritchie N.J., Schutter M.E., Dick R.P., and Myrold D.D. Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil. Appl. Environ. Microbiol. 66 (2000) 1668-1675
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1668-1675
    • Ritchie, N.J.1    Schutter, M.E.2    Dick, R.P.3    Myrold, D.D.4
  • 24
    • 33745775434 scopus 로고    scopus 로고
    • Mechanisms of disease: pathogenesis of Crohn's disease and ulcerative colitis
    • Sartor R.B. Mechanisms of disease: pathogenesis of Crohn's disease and ulcerative colitis. Nat. Clin. Pract. Gastroenterol. Hepatol. 3 (2006) 390-407
    • (2006) Nat. Clin. Pract. Gastroenterol. Hepatol. , vol.3 , pp. 390-407
    • Sartor, R.B.1
  • 25
    • 33748785148 scopus 로고    scopus 로고
    • Microbial communities in the surface mucopolysaccharide layer and the black band microbial mat of black band-diseased Siderastrea siderea
    • Sekar R., Mills D.K., Remily E.R., Voss J.D., and Richardson L.L. Microbial communities in the surface mucopolysaccharide layer and the black band microbial mat of black band-diseased Siderastrea siderea. Appl. Environ. Microbiol. 72 (2006) 5963-5973
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5963-5973
    • Sekar, R.1    Mills, D.K.2    Remily, E.R.3    Voss, J.D.4    Richardson, L.L.5
  • 26
    • 0031790538 scopus 로고    scopus 로고
    • Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
    • Suzuki M., Rappe M.S., and Giovannoni S.J. Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl. Environ. Microbiol. 64 (1998) 4522-4529
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4522-4529
    • Suzuki, M.1    Rappe, M.S.2    Giovannoni, S.J.3
  • 27
    • 0037405366 scopus 로고    scopus 로고
    • Microbial diversity in a thermophilic aerobic biofilm process: analysis by length heterogeneity PCR (LH-PCR)
    • Tiirola M.A., Suvilampi J.E., Kulomaa M.S., and Rintala J.A. Microbial diversity in a thermophilic aerobic biofilm process: analysis by length heterogeneity PCR (LH-PCR). Water Res. 37 (2003) 2259-2268
    • (2003) Water Res. , vol.37 , pp. 2259-2268
    • Tiirola, M.A.1    Suvilampi, J.E.2    Kulomaa, M.S.3    Rintala, J.A.4
  • 28
    • 0142026205 scopus 로고    scopus 로고
    • Inaugural article: honor thy symbionts
    • Xu J., and Gordon J.I. Inaugural article: honor thy symbionts. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 10452-10459
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 10452-10459
    • Xu, J.1    Gordon, J.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.