메뉴 건너뛰기




Volumn 23, Issue 24, 2007, Pages 3276-3279

Low folding propensity and high translation efficiency distinguish in vivo substrates of GroEL from other Escherichia coli proteins

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONIN; ESCHERICHIA COLI PROTEIN;

EID: 36949006280     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm513     Document Type: Article
Times cited : (26)

References (27)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 2
    • 0034607644 scopus 로고    scopus 로고
    • GroEL binds artificial proteins with random sequences
    • Aoki,K. et al. (2000) GroEL binds artificial proteins with random sequences. J. Biol. Chem., 275, 13755-13758.
    • (2000) J. Biol. Chem , vol.275 , pp. 13755-13758
    • Aoki, K.1
  • 3
    • 33750489742 scopus 로고    scopus 로고
    • Global aggregation of newly translated proteins in an Escherichia coli strain deficient of the chaperonin GroEL
    • Chapman,E. et al. (2006) Global aggregation of newly translated proteins in an Escherichia coli strain deficient of the chaperonin GroEL. Proc. Natl Acad. Sci. USA, 103, 15800-15805.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 15800-15805
    • Chapman, E.1
  • 4
    • 15944429658 scopus 로고    scopus 로고
    • Factors governing the substrate recognition by GroEL chaperone: A sequence correlation approach
    • Chaudhuri,T.K. and Gupta,P. (2005) Factors governing the substrate recognition by GroEL chaperone: A sequence correlation approach. Cell Stress Chaperones, 10, 24-36.
    • (2005) Cell Stress Chaperones , vol.10 , pp. 24-36
    • Chaudhuri, T.K.1    Gupta, P.2
  • 5
    • 0344237338 scopus 로고    scopus 로고
    • Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome
    • dos Reis,M. et al. (2003) Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome. Nucleic Acids Res., 31, 6976-6985.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6976-6985
    • dos Reis, M.1
  • 6
    • 4644280499 scopus 로고    scopus 로고
    • Solving the riddle of codon usage preferences: A test for translational selection
    • dos Reis,M. et al. (2004) Solving the riddle of codon usage preferences: A test for translational selection. Nucleic Acids Res. 32, 5036-5044.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5036-5044
    • dos Reis, M.1
  • 7
    • 0030750584 scopus 로고    scopus 로고
    • In vivo observation of polypeptide flux through the bacterial chaperonin system
    • Ewalt,K.L. et al. (1997) In vivo observation of polypeptide flux through the bacterial chaperonin system. Cell, 90, 491-500.
    • (1997) Cell , vol.90 , pp. 491-500
    • Ewalt, K.L.1
  • 8
    • 0024554107 scopus 로고
    • The groES and groEL heat shock gene products of Escherichia coli are essential for bacterial growth at all temperatures
    • Fayet,O. et al. (1989) The groES and groEL heat shock gene products of Escherichia coli are essential for bacterial growth at all temperatures. J. Bacteriol., 171, 1379-1385.
    • (1989) J. Bacteriol , vol.171 , pp. 1379-1385
    • Fayet, O.1
  • 9
    • 0030879154 scopus 로고    scopus 로고
    • PEDANTic genome analysis
    • Frishman,D. and Mewes,H.W. (1997) PEDANTic genome analysis. Trends Genet., 13, 415-416.
    • (1997) Trends Genet , vol.13 , pp. 415-416
    • Frishman, D.1    Mewes, H.W.2
  • 10
    • 0034641917 scopus 로고    scopus 로고
    • The complete sequence of the mucosal pathogen Ureaplasma urealyticum
    • Glass,J.I. et al. (2000) The complete sequence of the mucosal pathogen Ureaplasma urealyticum. Nature, 407, 757-762.
    • (2000) Nature , vol.407 , pp. 757-762
    • Glass, J.I.1
  • 12
    • 36949033246 scopus 로고    scopus 로고
    • Two families of chaperonin: Physiology and mechanism
    • Horwich,A.L. et al. (2007) Two families of chaperonin: Physiology and mechanism. Annu. Rev. Cell Dev. Biol., 23, 115-145.
    • (2007) Annu. Rev. Cell Dev. Biol , vol.23 , pp. 115-145
    • Horwich, A.L.1
  • 13
    • 0033547324 scopus 로고    scopus 로고
    • Identification of in vivo substrates of the chaperonin GroEL
    • Houry,W.A. et al. (1999) Identification of in vivo substrates of the chaperonin GroEL. Nature, 402, 147-154.
    • (1999) Nature , vol.402 , pp. 147-154
    • Houry, W.A.1
  • 14
    • 0019474499 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
    • Ikemura,T. (1981a) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J. Mol. Biol., 146, 1-21.
    • (1981) J. Mol. Biol , vol.146 , pp. 1-21
    • Ikemura, T.1
  • 15
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
    • Ikemura,T. (1981b) Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system. J. Mol. Biol., 151 389-409.
    • (1981) J. Mol. Biol , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 16
    • 22744447508 scopus 로고    scopus 로고
    • Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli
    • Kerner,M.J. et al. (2005) Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell, 122, 209-220.
    • (2005) Cell , vol.122 , pp. 209-220
    • Kerner, M.J.1
  • 17
    • 0030050614 scopus 로고    scopus 로고
    • A quantitative assessment of the role of the chaperonin proteins in protein folding in vivo
    • Lorimer,G.H. (1996) A quantitative assessment of the role of the chaperonin proteins in protein folding in vivo. FASEB J., 10 5-9.
    • (1996) FASEB J , vol.10 , pp. 5-9
    • Lorimer, G.H.1
  • 18
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe,T.M. and Eddy,S.R. (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 19
    • 33847305359 scopus 로고    scopus 로고
    • Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species
    • Man,O. and Pilpel,Y. (2007) Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species. Nat. Genet., 39, 415-421.
    • (2007) Nat. Genet , vol.39 , pp. 415-421
    • Man, O.1    Pilpel, Y.2
  • 20
    • 0032502839 scopus 로고    scopus 로고
    • Contact order, transition state placement and the refolding rates of single domain proteins
    • Plaxco,K.W. et al. (1998) Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol., 277, 985-994.
    • (1998) J. Mol. Biol , vol.277 , pp. 985-994
    • Plaxco, K.W.1
  • 21
    • 24044515001 scopus 로고    scopus 로고
    • FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded
    • Prilusky,J. et al. (2005) FoldIndex: A simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics, 21, 3435-3438.
    • (2005) Bioinformatics , vol.21 , pp. 3435-3438
    • Prilusky, J.1
  • 22
    • 31544443526 scopus 로고    scopus 로고
    • Escherichia coli K-12: A cooperatively developed annotation snapshot-2005
    • Riley,M. et al. (2006) Escherichia coli K-12: A cooperatively developed annotation snapshot-2005. Nucleic Acids Res. 34, 1-9.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1-9
    • Riley, M.1
  • 23
    • 11144242237 scopus 로고    scopus 로고
    • Identifying natural substrates for chaperonins using a sequence-based approach
    • Stan,G. et al. (2005) Identifying natural substrates for chaperonins using a sequence-based approach. Protein Sci., 14 193-201.
    • (2005) Protein Sci , vol.14 , pp. 193-201
    • Stan, G.1
  • 24
    • 33645237456 scopus 로고    scopus 로고
    • Residues in substrate proteins that interact with GroEL in the capture process are buried in the native state
    • Stan,G. et al. (2006) Residues in substrate proteins that interact with GroEL in the capture process are buried in the native state. Proc. Natl Acad. Sci. USA, 103, 4433-4438.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 4433-4438
    • Stan, G.1
  • 25
    • 34247882072 scopus 로고    scopus 로고
    • Life on the edge: A link between gene expression levels and aggregation rates of human proteins
    • Tartaglia,G.G. et al. (2007) Life on the edge: A link between gene expression levels and aggregation rates of human proteins. Trends Biochem.Sci., 32, 204-206.
    • (2007) Trends Biochem.Sci , vol.32 , pp. 204-206
    • Tartaglia, G.G.1
  • 26
    • 0034669882 scopus 로고    scopus 로고
    • Why are 'natively unfolded' proteins unstructured under physiologic conditions?
    • Uversky,V.N. et al. (2000) Why are 'natively unfolded' proteins unstructured under physiologic conditions? Proteins, 41, 415-427.
    • (2000) Proteins , vol.41 , pp. 415-427
    • Uversky, V.N.1
  • 27
    • 0027065105 scopus 로고
    • Purified chaperonin 60 (groEL) interacts with the nonnative states of a multitude of Escherichia coli proteins
    • Viitanen,P.V. et al. (1992) Purified chaperonin 60 (groEL) interacts with the nonnative states of a multitude of Escherichia coli proteins. Protein Sci., 1, 363-369.
    • (1992) Protein Sci , vol.1 , pp. 363-369
    • Viitanen, P.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.