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Volumn 274, Issue 1629, 2007, Pages 3087-3095

A supertree of Temnospondyli: Cladogenetic patterns in the most species-rich group of early tetrapods

Author keywords

Diversification; Permian; Stereospondyli; Supertree; Temnospondyli; Triassic

Indexed keywords

AMPHIBIAN; CLADISTICS; MASS EXTINCTION; PERMIAN; PHYLOGENY; SPECIES RICHNESS; TRIASSIC;

EID: 36849007104     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2007.1250     Document Type: Article
Times cited : (72)

References (46)
  • 1
    • 85020795499 scopus 로고    scopus 로고
    • Baum, B. R. & Ragan, M. A. 1993 Reply to A. G. Rodrigo's A comment on Baum's method for combining phylogenetic trees. Taxon 42, 637-640. (doi:10.2307/1222541)
    • Baum, B. R. & Ragan, M. A. 1993 Reply to A. G. Rodrigo's "A comment on Baum's method for combining phylogenetic trees". Taxon 42, 637-640. (doi:10.2307/1222541)
  • 3
    • 8544277239 scopus 로고    scopus 로고
    • Ecosystem remodelling among vertebrates at the Permo-Triassic boundary in Russia
    • doi:10. 1038/nature02950
    • Benton, M. J., Tverdokhlebov, V. P. & Surkov, M. V. 2004 Ecosystem remodelling among vertebrates at the Permo-Triassic boundary in Russia. Nature 432, 97-100. (doi:10. 1038/nature02950)
    • (2004) Nature , vol.432 , pp. 97-100
    • Benton, M.J.1    Tverdokhlebov, V.P.2    Surkov, M.V.3
  • 4
    • 85020762943 scopus 로고    scopus 로고
    • Bininda-Emonds, O. R. P. 2004 PERLRAT.PL version 1.0.9a. Program distributed by the author. Friedrich-Schiller- Universität Jena, Germany: Institut für Spezielle Zoologie und Evolutionsbiologie mit Phyletischem Museum
    • Bininda-Emonds, O. R. P. 2004 PERLRAT.PL version 1.0.9a. Program distributed by the author. Friedrich-Schiller- Universität Jena, Germany: Institut für Spezielle Zoologie und Evolutionsbiologie mit Phyletischem Museum.
  • 6
    • 33747375683 scopus 로고    scopus 로고
    • Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets
    • doi:10.1080/10635150500541722
    • Burleigh, J. G., Driskell, A. C. & Sanderson, M. J. 2006 Supertree bootstrapping methods for assessing phylogenetic variation among genes in genome-scale data sets. Syst. Biol. 55, 426-440. (doi:10.1080/10635150500541722)
    • (2006) Syst. Biol , vol.55 , pp. 426-440
    • Burleigh, J.G.1    Driskell, A.C.2    Sanderson, M.J.3
  • 7
    • 0036959868 scopus 로고    scopus 로고
    • Whole-tree methods for detecting differential diversification rates
    • doi:10.1080/10635150290102555
    • Chan, K. M. A. & Moore, B. R. 2002 Whole-tree methods for detecting differential diversification rates. Syst. Biol. 51, 855-865. (doi:10.1080/10635150290102555)
    • (2002) Syst. Biol , vol.51 , pp. 855-865
    • Chan, K.M.A.1    Moore, B.R.2
  • 8
    • 17444376463 scopus 로고    scopus 로고
    • SYMMETREE: Whole-tree analysis of differential diversification rates
    • doi:10.1093/bioinformatics/bti175
    • Chan, K. M. A. & Moore, B. R. 2005 SYMMETREE: whole-tree analysis of differential diversification rates. Bioinformatics 21, 1709-1710. (doi:10.1093/bioinformatics/bti175)
    • (2005) Bioinformatics , vol.21 , pp. 1709-1710
    • Chan, K.M.A.1    Moore, B.R.2
  • 9
    • 11944265753 scopus 로고
    • Relative symmetry of cladograms and phenograms: An experimental study
    • doi:10.2307/2413487
    • Colless, D. H. 1995 Relative symmetry of cladograms and phenograms: an experimental study. Syst. Biol. 44, 102-108. (doi:10.2307/2413487)
    • (1995) Syst. Biol , vol.44 , pp. 102-108
    • Colless, D.H.1
  • 10
    • 13844250623 scopus 로고    scopus 로고
    • Clann: Investigating phylogenetic information through supertree analyses
    • doi:10.1093/bioinformatics/ bti020
    • Creevey, C. J. & McInerney, J. O. 2005 Clann: investigating phylogenetic information through supertree analyses. Bioinformatics 21, 390-392. (doi:10.1093/bioinformatics/ bti020)
    • (2005) Bioinformatics , vol.21 , pp. 390-392
    • Creevey, C.J.1    McInerney, J.O.2
  • 12
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • doi:10.1038/nrg1603
    • Delsuc, F., Brinkmann, H. & Philippe, H. 2005 Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 6, 361-375. (doi:10.1038/nrg1603)
    • (2005) Nat. Rev. Genet , vol.6 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 14
    • 85020812383 scopus 로고    scopus 로고
    • Felsenstein, J. 2000 PHYLIP version 3.6 alpha. Seattle, WA: Department of Genetics, University of Washington
    • Felsenstein, J. 2000 PHYLIP version 3.6 alpha. Seattle, WA: Department of Genetics, University of Washington.
  • 15
    • 27644556395 scopus 로고    scopus 로고
    • Bats, clocks, and rocks: Diversification patterns in Chiroptera
    • Jones, K. E., Bininda-Emonds, O. R. P. & Gittleman, J. L. 2005 Bats, clocks, and rocks: diversification patterns in Chiroptera. Evolution 59, 2243-2255.
    • (2005) Evolution , vol.59 , pp. 2243-2255
    • Jones, K.E.1    Bininda-Emonds, O.R.P.2    Gittleman, J.L.3
  • 16
    • 4644237660 scopus 로고    scopus 로고
    • The evolution of body size. Cope's Rule and the origin of amniotes
    • doi:10. 1080/ 10635150490445706
    • Laurin, M. 2004 The evolution of body size. Cope's Rule and the origin of amniotes. Syst. Biol. 53, 594-622. (doi:10. 1080/ 10635150490445706)
    • (2004) Syst. Biol , vol.53 , pp. 594-622
    • Laurin, M.1
  • 17
    • 85020779531 scopus 로고    scopus 로고
    • Maddison, D. R. & Maddison, W. P. 2005 MACCLADE 4: analysis of phylogeny and character evolution version 4.08 OS X. Sunderland, MA: Sinauer Associates
    • Maddison, D. R. & Maddison, W. P. 2005 MACCLADE 4: analysis of phylogeny and character evolution version 4.08 OS X. Sunderland, MA: Sinauer Associates.
  • 18
    • 34249739745 scopus 로고    scopus 로고
    • Fossils, molecules, divergence times, and the origin of lissamphibians
    • doi:10.1080/10635150701397635
    • Marjanovic, D. & Laurin, M. 2007 Fossils, molecules, divergence times, and the origin of lissamphibians. Syst. Biol. 56, 369-388. (doi:10.1080/10635150701397635)
    • (2007) Syst. Biol , vol.56 , pp. 369-388
    • Marjanovic, D.1    Laurin, M.2
  • 19
    • 0001202383 scopus 로고
    • The radiations of temnospondyl amphibians
    • eds P. D. Taylor & G. P. Larwood, pp, Oxford, UK: Clarendon Press
    • Milner, A. R. 1990 The radiations of temnospondyl amphibians. In Major evolutionary radiations (eds P. D. Taylor & G. P. Larwood), pp. 321-349. Oxford, UK: Clarendon Press.
    • (1990) Major evolutionary radiations , pp. 321-349
    • Milner, A.R.1
  • 20
    • 14844340332 scopus 로고    scopus 로고
    • Detecting diversification rate variation in supertrees
    • ed. O. R. P. Bininda-Emonds, pp, Dordrecht, The Netherlands: Kluwer Academic Publishers
    • Moore, B. R., Chan, K. M. A. & Donoghue, M. J. 2004 Detecting diversification rate variation in supertrees. In Phylogenetic supertrees: combining information to reveal the tree of life (ed. O. R. P. Bininda-Emonds), pp. 487-533. Dordrecht, The Netherlands: Kluwer Academic Publishers.
    • (2004) Phylogenetic supertrees: Combining information to reveal the tree of life , pp. 487-533
    • Moore, B.R.1    Chan, K.M.A.2    Donoghue, M.J.3
  • 21
    • 33751227478 scopus 로고    scopus 로고
    • Increasing data transparency and estimating phylogenetic uncertainty in supertrees: Approaches using nonparametric bootstrapping
    • doi:10. 1080/10635150600920693
    • Moore, B. R., Smith, S. A. & Donoghue, M. J. 2006 Increasing data transparency and estimating phylogenetic uncertainty in supertrees: approaches using nonparametric bootstrapping. Syst. Biol. 55, 662-676. (doi:10. 1080/10635150600920693)
    • (2006) Syst. Biol , vol.55 , pp. 662-676
    • Moore, B.R.1    Smith, S.A.2    Donoghue, M.J.3
  • 22
    • 0033504552 scopus 로고    scopus 로고
    • The parsimony ratchet, a new method for rapid parsimony analysis
    • tb00277.x, doi:10. 1111/j.1096-0031.1999
    • Nixon, K. C. 1999 The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15, 407-414. (doi:10. 1111/j.1096-0031.1999. tb00277.x)
    • (1999) Cladistics , vol.15 , pp. 407-414
    • Nixon, K.C.1
  • 23
    • 0002618993 scopus 로고
    • Taxic origin and temporal diversity: The effect of phylogeny
    • eds M. J. Novacek & Q. D. Wheeler, pp, New York, NY: Columbia University Press
    • Norell, M. A. 1992 Taxic origin and temporal diversity: the effect of phylogeny. In Extinction and phylogeny (eds M. J. Novacek & Q. D. Wheeler), pp. 88-118. New York, NY: Columbia University Press.
    • (1992) Extinction and phylogeny , pp. 88-118
    • Norell, M.A.1
  • 24
    • 0036005524 scopus 로고    scopus 로고
    • Matrix representation with parsimony, taxonomic congruence and total evidence
    • doi:10.1080/106351502753475925
    • Pisani, D. & Wilkinson, M. 2002 Matrix representation with parsimony, taxonomic congruence and total evidence. Syst. Biol. 51, 151-155. (doi:10.1080/106351502753475925)
    • (2002) Syst. Biol , vol.51 , pp. 151-155
    • Pisani, D.1    Wilkinson, M.2
  • 25
    • 34547751897 scopus 로고    scopus 로고
    • Supertrees disentangle the Chimerical origin of eukaryotic genomes
    • doi:10.1093/molbev/ msm095
    • Pisani, D., Cotton, J. A. & McInerney, J. O. 2007 Supertrees disentangle the Chimerical origin of eukaryotic genomes. Mol. Biol. Evol. 24, 1752-1760. (doi:10.1093/molbev/ msm095)
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1752-1760
    • Pisani, D.1    Cotton, J.A.2    McInerney, J.O.3
  • 26
    • 0029495388 scopus 로고
    • A modification to Baum and Ragan's method for combining phylogenetic trees
    • doi:10.2307/2413710
    • Purvis, A. 1995 A modification to Baum and Ragan's method for combining phylogenetic trees. Syst. Biol. 44, 251-255. (doi:10.2307/2413710)
    • (1995) Syst. Biol , vol.44 , pp. 251-255
    • Purvis, A.1
  • 27
    • 0035527380 scopus 로고    scopus 로고
    • Changing the landscape: A new strategy for estimating large phylogenies
    • doi:10.1080/106351501750107477
    • Quicke, D. L. J., Taylor, J. & Purvis, A. 2001 Changing the landscape: a new strategy for estimating large phylogenies. Syst. Biol. 50, 60-66. (doi:10.1080/106351501750107477)
    • (2001) Syst. Biol , vol.50 , pp. 60-66
    • Quicke, D.L.J.1    Taylor, J.2    Purvis, A.3
  • 28
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • doi:10. 1016/0025-5564(81) 90043-2
    • Robinson, D. F. & Foulds, L. R. 1981 Comparison of phylogenetic trees. Math. Biosci. 53, 131-147. (doi:10. 1016/0025-5564(81) 90043-2)
    • (1981) Math. Biosci , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 29
    • 0001466544 scopus 로고
    • A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree
    • Rodrigo, A. G., Kelly-Borges, M., Bergquist, P. R. & Bergquist, P. L. 1993 A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree. N. Zeal. J. Bot. 31, 257-268.
    • (1993) N. Zeal. J. Bot , vol.31 , pp. 257-268
    • Rodrigo, A.G.1    Kelly-Borges, M.2    Bergquist, P.R.3    Bergquist, P.L.4
  • 30
    • 33846897432 scopus 로고    scopus 로고
    • Dates, nodes and character conflict: Addressing the lissamphibian origin problem
    • doi:10.1017/S1477201906002008
    • Ruta, M. & Coates, M. I. 2007 Dates, nodes and character conflict: addressing the lissamphibian origin problem. J. Syst. Palaeontol. 5, 69-122. (doi:10.1017/S1477201906002008)
    • (2007) J. Syst. Palaeontol , vol.5 , pp. 69-122
    • Ruta, M.1    Coates, M.I.2
  • 31
    • 33748275455 scopus 로고    scopus 로고
    • A supertree of early tetrapods
    • doi:10. 1098/rspb.2006.3577
    • Ruta, M., Jeffery, J. E. & Coates, M. I. 2003 A supertree of early tetrapods. Proc. R. Soc. B 273, 2107-2111. (doi:10. 1098/rspb.2006.3577)
    • (2003) Proc. R. Soc. B , vol.273 , pp. 2107-2111
    • Ruta, M.1    Jeffery, J.E.2    Coates, M.I.3
  • 32
    • 0344197465 scopus 로고    scopus 로고
    • Evolutionary patterns in early tetrapods. I. Rapid initial diversification followed by decrease in rates of character change
    • doi:10.1098/rspb.2003.2524
    • Ruta, M., Wagner, P. J. & Coates, M. I. 2006 Evolutionary patterns in early tetrapods. I. Rapid initial diversification followed by decrease in rates of character change. Proc. R. Soc. B 270, 2507-2516. (doi:10.1098/rspb.2003.2524)
    • (2006) Proc. R. Soc. B , vol.270 , pp. 2507-2516
    • Ruta, M.1    Wagner, P.J.2    Coates, M.I.3
  • 34
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • doi:10.1080/ 10635150290069913
    • Shimodaira, H. 2002 An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51, 492-508. (doi:10.1080/ 10635150290069913)
    • (2002) Syst. Biol , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 37
    • 85020774401 scopus 로고    scopus 로고
    • Swofford, D. L. 1998 PAUP*: phylogenetic analysis using parsimony (*and other methods) version 4.0b10 Altivec. Sunderland, MA: Sinauer Associates
    • Swofford, D. L. 1998 PAUP*: phylogenetic analysis using parsimony (*and other methods) version 4.0b10 Altivec. Sunderland, MA: Sinauer Associates.
  • 38
    • 0021084212 scopus 로고
    • Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
    • doi:10.2307/2408332
    • Templeton, A. 1983 Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37, 221-224. (doi:10.2307/2408332)
    • (1983) Evolution , vol.37 , pp. 221-224
    • Templeton, A.1
  • 39
    • 0033916185 scopus 로고    scopus 로고
    • RADCON: Phylogenetic tree comparison and consensus
    • doi:10.1093/bioinformatics/16.5.486
    • Thorley, J. L. & Page, R. D. M. 2000 RADCON: phylogenetic tree comparison and consensus. Bioinformatics 16, 486-487. (doi:10.1093/bioinformatics/16.5.486)
    • (2000) Bioinformatics , vol.16 , pp. 486-487
    • Thorley, J.L.1    Page, R.D.M.2
  • 40
    • 53149084882 scopus 로고    scopus 로고
    • An analysis of dinosaurian biogeography: Evidence for the existence of vicariance and dispersal patterns caused by geological events
    • doi:10. 1098/rspb.2001.1921
    • Upchurch, P., Hunn, C. A. & Norman, D. B. 2002 An analysis of dinosaurian biogeography: evidence for the existence of vicariance and dispersal patterns caused by geological events. Proc. R. Soc. B 269, 613-621. (doi:10. 1098/rspb.2001.1921)
    • (2002) Proc. R. Soc. B , vol.269 , pp. 613-621
    • Upchurch, P.1    Hunn, C.A.2    Norman, D.B.3
  • 41
    • 2442471822 scopus 로고    scopus 로고
    • Cranial morphology and affinities of Microbrachis, and a reappraisal of the phylogeny and lifestyle of the first amphibians
    • doi:10.1671/5.1
    • Vallin, G. & Laurin, M. 2004 Cranial morphology and affinities of Microbrachis, and a reappraisal of the phylogeny and lifestyle of the first amphibians. J. Vert. Paleontol. 24, 56-72. (doi:10.1671/5.1)
    • (2004) J. Vert. Paleontol , vol.24 , pp. 56-72
    • Vallin, G.1    Laurin, M.2
  • 42
    • 33748249630 scopus 로고    scopus 로고
    • Evolutionary patterns in early tetrapods. II. Differing constraints on available character space among clades
    • doi:10.1098/rspb.2006. 3561
    • Wagner, P. J., Ruta, M. & Coates, M. I. 2006 Evolutionary patterns in early tetrapods. II. Differing constraints on available character space among clades. Proc. R. Soc. B 273, 2113-2118. (doi:10.1098/rspb.2006. 3561)
    • (2006) Proc. R. Soc. B , vol.273 , pp. 2113-2118
    • Wagner, P.J.1    Ruta, M.2    Coates, M.I.3
  • 43
    • 33750943496 scopus 로고    scopus 로고
    • Confirmation of Romer's Gap as a low oxygen interval constraining the timing of initial arthropod and vertebrate terrestrialization
    • doi:10.1073/pnas.0607824103
    • Ward, P., Labandeira, C., Laurin, M. & Berner, R. A. 2006 Confirmation of Romer's Gap as a low oxygen interval constraining the timing of initial arthropod and vertebrate terrestrialization. Proc. Natl Acad. Sci. USA 103, 16 818-16 822. (doi:10.1073/pnas.0607824103)
    • (2006) Proc. Natl Acad. Sci. USA , vol.103
    • Ward, P.1    Labandeira, C.2    Laurin, M.3    Berner, R.A.4
  • 44
    • 31344435061 scopus 로고    scopus 로고
    • Measuring support and finding unsupported relationships in supertrees
    • doi:10.1080/ 10635150590950362
    • Wilkinson, M., Pisani, D., Cotton, J. A. & Corfe, I. 2005a Measuring support and finding unsupported relationships in supertrees. Syst. Biol. 54, 823-831. (doi:10.1080/ 10635150590950362)
    • (2005) Syst. Biol , vol.54 , pp. 823-831
    • Wilkinson, M.1    Pisani, D.2    Cotton, J.A.3    Corfe, I.4
  • 45
    • 22844442070 scopus 로고    scopus 로고
    • The shape of supertrees to come: Tree shape related properties of fourteen supertree methods
    • doi:10.1080/106351 50590949832
    • Wilkinson, M. et al. 2005b The shape of supertrees to come: tree shape related properties of fourteen supertree methods. Syst. Biol. 54, 419-431. (doi:10.1080/106351 50590949832)
    • (2005) Syst. Biol , vol.54 , pp. 419-431
    • Wilkinson, M.1
  • 46
    • 0034348606 scopus 로고    scopus 로고
    • The phylogeny of the 'higher' temnospondyls (Vertebrata: Choanata) and its implications for the monophyly and origins of the Stereospondyli
    • doi:10. 1006/zjls.1998.0184
    • Yates, A. M. & Warren, A. A. 2000 The phylogeny of the 'higher' temnospondyls (Vertebrata: Choanata) and its implications for the monophyly and origins of the Stereospondyli. Zool. J. Linn. Soc. 128, 77-121. (doi:10. 1006/zjls.1998.0184)
    • (2000) Zool. J. Linn. Soc , vol.128 , pp. 77-121
    • Yates, A.M.1    Warren, A.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.