Guanine tetrad and palindromic sequence play critical roles in the RNA dimerization of bovine foamy virus

Archives of Virology

Volumn 152, Issue 12, 2007, Pages 2159-2167

  Yu, H ^b   Li, T ^b   Qiao, W ^b   Chen, Q ^b   Geng, Y ^a  

^a NANKAI UNIVERSITY   (China)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE; VIRUS RNA;

ANIMAL; ARTICLE; BINDING SITE; BIOSYNTHESIS; CATTLE; CELL LINE; CHEMISTRY; CONFORMATION; CYTOLOGY; DIMERIZATION; GENE DELETION; GENETIC TRANSFECTION; GENETICS; LUNG; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYSIOLOGY; REGULATORY SEQUENCE; SPUMA VIRUS; VIROLOGY; VIRUS ASSEMBLY;

ANIMALS; BASE SEQUENCE; BINDING SITES; CATTLE; CELL LINE; DIMERIZATION; GUANINE; LUNG; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; REGULATORY SEQUENCES, NUCLEIC ACID; RNA, VIRAL; SEQUENCE DELETION; SPUMAVIRUS; TRANSFECTION; VIRUS ASSEMBLY;

BOVINE FOAMY VIRUS; SPUMAVIRUS;

EID: 36749071590     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-007-1047-5     Document Type: Article

References (45)

1. B Berkhout BB Essink I Schoneveld 1993 In vitro dimerization of HIV-2 leader RNA in the absence of PuGGAPuA motifs FASEB J 7 181 187
2. B Berkhout JL van Wamel 1996 Role of the DIS hairpin in replication of human immunodeficiency virus type 1 J Virol 70 6723 6732
3. PD Bieniasz O Erlwein A Aguzzi A Rethwilm MO McClure 1997 Gene transfer using replication-defective human foamy virus vectors Virology 235 65 72
4. D Cain O Erlwein A Grigg RA Russell MO McClure 2001 Palindromic sequence plays a critical role in human foamy virus dimerization J Virol 75 3731 3739
5. JL Clever TG Parslow 1997 Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation J Virol 71 3407 3414
6. AM Dirac H Huthoff J Kjems B Berkhout 2001 The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus type 2 RNA genome J Biol Chem 276 32345 32352
7. AM Dirac H Huthoff J Kjems B Berkhout 2002 Requirements for RNA heterodimerization of the human immunodeficiency virus type 1 (HIV-1) and HIV-2 genomes J Gen Virol 83 2533 2542
8. E Ennifar P Walter B Ehresmann C Ehresmann P Dumas 2001 Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site Nat Struct Biol 8 1064 1068
9. E Ennifar M Yusupov P Walter R Marquet B Ehresmann C Ehresmann P Dumas 1999 The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges Structure 7 1439 1449
10. O Erlwein D Cain N Fischer A Rethwilm MO McClure 1997 Identification of sites that act together to direct dimerization of human foamy virus RNA in vitro Virology 229 251 258
11. YX Feng W Fu AJ Winter JG Levin A Rein 1995 Multiple regions of Harvey sarcoma virus RNA can dimerize in vitro J Virol 69 2486 2490
12. F Girard F Barbault C Gouyette T Huynh-Dinh J Paoletti G Lancelot 1999 Dimer initiation sequence of HIV-1Lai genomic RNA: NMR solution structure of the extended duplex J Biomol Struct Dyn 16 1145 1157
13. M Heinkelein M Dressler G Jarmy M Rammling H Imrich J Thurow D Lindemann A Rethwilm 2002 Improved primate foamy virus vectors and packaging constructs J Virol 76 3774 3783
14. M Heinkelein J Thurow M Dressler H Imrich D Neumann-Haefelin MO McClure A Rethwilm 2000 Complex effects of deletions in the 5′ untranslated region of primate foamy virus on viral gene expression and RNA packaging J Virol 74 3141 3148
15. S Horiya X Li G Kawai R Saito A Katoh K Kobayashi K Harada 2003 RNA LEGO: magnesium-dependent formation of specific RNA assemblies through kissing interactions Chem Biol 10 645 654
16. JM Lanchy JD Ivanovitch JS Lodmell 2003 A structural linkage between the dimerization and encapsidation signals in HIV-2 leader RNA RNA 9 1007 1018
17. JM Lanchy JS Lodmell 2002 Alternate usage of two dimerization initiation sites in HIV-2 viral RNA in vitro J Mol Biol 319 637 648
18. M Laughrea L Jette 1997 HIV-1 genome dimerization: kissing-loop hairpin dictates whether nucleotides downstream of the 5′ splice junction contribute to loose and tight dimerization of human immunodeficiency virus RNA Biochemistry 36 9501 9508
19. JJ Liu SH Liu QM Chen YQ Geng 1999 Borf-1 protein identified as a transcriptional trans-activator of bovine foamy virus Chinese Sci Bull 44 1017 1020
20. JJ Liu SZ Wang L Zhang WT Qiao QM Chen YQ Geng 2000 Functional analysis of bovine foamy virus accessory protein and Borf-1 responsive elements in long terminal repeat Chinese J Virol 16 141 149
21. SH Liu HX Chen JT Chen D Liu QM Chen YQ Geng 1997 Isolation and identification of a bovine spumavirus isolate 3026 Chinese J Virol 13 140 145
22. JS Lodmell C Ehresmann B Ehresmann R Marquet 2000 Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site RNA 6 1267 1276
23. H Ly DP Nierlich JC Olsen AH Kaplan 1999 Moloney murine sarcoma virus genomic RNAs dimerize via a two-step process: a concentration-dependent kissing-loop interaction is driven by initial contact between consecutive guanines J Virol 73 7255 7261
24. H Ly TG Parslow 2002 Bipartite signal for genomic RNA dimerization in Moloney murine leukemia virus J Virol 76 3135 3144
25. MO McClure PD Bieniasz TF Schulz IL Chrystie G Simpson A Aguzzi JG Hoad A Cunningham J Kirkwood RA Weiss 1994 Isolation of a new foamy retrovirus from orangutans J Virol 68 7124 7130
26. CD Meiering ML Linial 2001 Historical perspective of foamy virus epidemiology and infection Clin Microbiol Rev 14 165 176
27. T Monie J Greatorex AM Lever 2001 Oligonucleotide mapping of the core genomic RNA dimer linkage in human T-cell leukaemia virus type-1 Virus Res 78 45 56
28. M Mougel Y Zhang E Barklis 1996 cis-active structural motifs involved in specific encapsidation of Moloney murine leukemia virus RNA J Virol 70 5043 5050
29. SM Murray LJ Picker MK Axthelm ML Linial 2006 Expanded tissue targets for foamy virus replication with simian immunodeficiency virus-induced immunosuppression J Virol 80 663 670
30. BA Ortiz-Conde SH Hughes 1999 Studies of the genomic RNA of leucosis viruses: implications for RNA dimerization J Virol 73 7165 7174
31. JC Paillart L Berthoux M Ottmann JL Darlix R Marquet B Ehresmann C Ehresmann 1996 A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis J Virol 70 8348 8354
32. R Pamba C Jeronimo D Archambault 1999 Detection of bovine retrospumavirus by the polymerase chain reaction J Virol Methods 78 199 208
33. J Park A Mergia 2000 Mutational analysis of the 5′ leader region of simian foamy virus type 1 Virology 274 203 212
34. N Pattabiraman HM Martinez BA Shapiro 2002 Molecular modeling and dynamics studies of HIV-1 kissing loop structures J Biomol Struct Dyn 20 397 412
35. E Polge JL Darlix J Paoletti P Fosse 2000 Characterization of loose and tight dimer forms of avian leukosis virus RNA J Mol Biol 300 41 56
36. WT Qiao CG Guo SH Wang ZJ Wang QM Chen YQ Geng 2002 Cis-acting element located in the bovine foamy virus internal promoter possesses the properties of a transcriptional enhancer Chin Sci Bull 47 1108 1112
37. RS Russell J Hu V Beriault AJ Mouland M Laughrea L Kleiman MA Wainberg C Liang 2003 Sequences downstream of the 5′ splice donor site are required for both packaging and dimerization of human immunodeficiency virus type 1 RNA J Virol 77 84 96
38. A Saib 1999 The retroviral spumaviruses: new data in retrovirology Bull Acad Natl Med 183 559 568
39. J Sakuragi A Iwamoto T Shioda 2002 Dissociation of genome dimerization from packaging functions and virion maturation of human immunodeficiency virus type 1 J Virol 76 959 967
40. MF Shubsda MP McPike J Goodisman JC Dabrowiak 1999 Monomer-dimer equilibrium constants of RNA in the dimer initiation site of human immunodeficiency virus type 1 Biochemistry 38 10147 10157
41. KI Takahashi S Baba P Chattopadhyay Y Koyanagi N Yamamoto H Takaku G Kawai 2000 Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome RNA 6 96 102
42. V Theilleux-Delalande F Girard T Huynh-Dinh G Lancelot J Paoletti 2000 The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer Eur J Biochem 267 2711 2719
43. J Tobaly-Tapiero P Bittoun M Neves MC Guillemin CH Lecellier F Puvion-Dutilleul B Gicquel S Zientara ML Giron TH de A Saib 2000 Isolation and characterization of an equine foamy virus J Virol 74 4064 4073
44. L Zhang WT Qiao SH Liu ZJ Wang QM Chen YQ Geng 2000 Regulatory elements that mediate transactivation by Tas in the internal promoter of bovine foamy virus Chin J Virol 16 232 237
45. L Zhang SZ Wang JJ Liu SH Liu QM Chen YQ Geng 2000 Cloning and functional analysis of the internal promoter of a bovine foamy virus Chin J Virol 16 227 231