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Volumn 267, Issue 9, 2000, Pages 2711-2719

The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer

Author keywords

Dimeric RNA; Loop loop complex; extended duplex; NMR; RNA conformational changes

Indexed keywords

DOUBLE STRANDED RNA; VIRUS RNA;

EID: 0034071970     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.2000.01292.x     Document Type: Article
Times cited : (35)

References (30)
  • 1
    • 0000457030 scopus 로고
    • Structure of the retroviral genome
    • Weiss, R., Teich, N., Varmus, H. & Coffin, J., eds. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA
    • 1. Coffin, J. (1984) Structure of the retroviral genome. In RNA Tumor Viruses (Weiss, R., Teich, N., Varmus, H. & Coffin, J., eds), Vol. 1, pp. 261-368. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA.
    • (1984) RNA Tumor Viruses , vol.1 , pp. 261-368
    • Coffin, J.1
  • 2
    • 0024297783 scopus 로고
    • Ordered interstrand and intrastrand DNA transfer during reverse transcription
    • 2. Panganiban, A. & Fiore, D. (1988) Ordered interstrand and intrastrand DNA transfer during reverse transcription. Science 241, 1064-1069.
    • (1988) Science , vol.241 , pp. 1064-1069
    • Panganiban, A.1    Fiore, D.2
  • 3
    • 0025095253 scopus 로고
    • Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination
    • 3. Hu, W.S. & Temin, H.M. (1990) Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and high rate of genetic recombination. Proc. Natl Acad. Sci. USA 87, 1556-1560.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1556-1560
    • Hu, W.S.1    Temin, H.M.2
  • 4
    • 0025635705 scopus 로고
    • Retroviral recombination and reverse transcription
    • 4. Hu, W.S. & Temin, H.S. (1990) Retroviral recombination and reverse transcription. Science 250, 1227-1233.
    • (1990) Science , vol.250 , pp. 1227-1233
    • Hu, W.S.1    Temin, H.S.2
  • 5
    • 0025959787 scopus 로고
    • Sex and recombination in retroviruses
    • 5. Temin, H.M. (1991) Sex and recombination in retroviruses. Trends Genet. 7, 71-74.
    • (1991) Trends Genet. , vol.7 , pp. 71-74
    • Temin, H.M.1
  • 6
    • 0026608762 scopus 로고
    • Homologous recombination of copackaged retrovirus RNAs during reverse transcription
    • 6. Stuhlmann, H. & Berg, P. (1992) Homologous recombination of copackaged retrovirus RNAs during reverse transcription. J. Virol. 66, 2378-2388.
    • (1992) J. Virol. , vol.66 , pp. 2378-2388
    • Stuhlmann, H.1    Berg, P.2
  • 7
    • 0027180278 scopus 로고
    • Retrovirus variation and reverse transcription: Abnormal strand transfers result in retrovirus genetic variation
    • 7. Temin, H.M. (1993) Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation. Proc. Natl Acad. Sci. USA 90, 6900-6903.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 6900-6903
    • Temin, H.M.1
  • 8
    • 0025021014 scopus 로고
    • A study of the dimer formation of Rous sarcoma virus RNA and of its effect on viral protein synthesis in vitro
    • 8. Bieth, E., Gabus, C. & Darlix, J.L. (1990) A study of the dimer formation of Rous sarcoma virus RNA and of its effect on viral protein synthesis in vitro. Nucleic Acids Res. 18, 119-127.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 119-127
    • Bieth, E.1    Gabus, C.2    Darlix, J.L.3
  • 9
    • 0025295654 scopus 로고
    • Retroviral RNA packaging: Sequence requirements and implications
    • 9. Linial, M.L. & Miller, A.D. (1990) Retroviral RNA packaging: sequence requirements and implications. Curr. Top. Microbiol. Immunol. 157, 125-152.
    • (1990) Curr. Top. Microbiol. Immunol. , vol.157 , pp. 125-152
    • Linial, M.L.1    Miller, A.D.2
  • 10
    • 0028247576 scopus 로고
    • Retroviral RNA packaging: A review
    • 10. Rein, A. (1994) Retroviral RNA packaging: a review. Arch. Virol. Suppl. 9, 513-522.
    • (1994) Arch. Virol. Suppl. , vol.9 , pp. 513-522
    • Rein, A.1
  • 11
    • 0029585377 scopus 로고
    • First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses
    • 11. Darlix, J.-L., Lapadat-Tapolsky, M., de Rocquigny, H. & Roques, B. (1995) First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses. J. Mol. Biol. 254, 523-537.
    • (1995) J. Mol. Biol. , vol.254 , pp. 523-537
    • Darlix, J.-L.1    Lapadat-Tapolsky, M.2    De Rocquigny, H.3    Roques, B.4
  • 12
    • 0028027708 scopus 로고
    • A 19-nucleotide sequence upstream of the 5′ major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA
    • 12. Laughrea, M. & Jetté, L. (1994) A 19-nucleotide sequence upstream of the 5′ major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA. Biochemistry 33, 13464-13474.
    • (1994) Biochemistry , vol.33 , pp. 13464-13474
    • Laughrea, M.1    Jetté, L.2
  • 13
    • 0028239204 scopus 로고
    • Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro
    • 13. Skripnin, E., Paillart, J.C., Marquet, R., Ehresmann, B. & Ehresmann, C. (1994) Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. Proc. Natl Acad. Sci. USA 91, 4945-4949.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 4945-4949
    • Skripnin, E.1    Paillart, J.C.2    Marquet, R.3    Ehresmann, B.4    Ehresmann, C.5
  • 14
    • 0028986869 scopus 로고
    • Lai RNA at low ionic strength: An autocomplementary sequence in 5′ leader region is evidenced by an antisense oligonucleotide
    • Lai RNA at low ionic strength: an autocomplementary sequence in 5′ leader region is evidenced by an antisense oligonucleotide. J. Biol. Chem. 270, 8209-8216.
    • (1995) J. Biol. Chem. , vol.270 , pp. 8209-8216
    • Muriaux, D.1    Girard, P.-M.2    Bonnet-Mathonière, B.3    Paoletti, J.4
  • 15
    • 0029097230 scopus 로고
    • A short autocomplementary sequence in the 5′ leader region is responsible for dimerization of MoMuLV genomic RNA
    • 15. Girard, P.-M., Bonnet-Mathonière, B., Muriaux, D. & Paoletti, J. (1995) A short autocomplementary sequence in the 5′ leader region is responsible for dimerization of MoMuLV genomic RNA. Biochemistry 34, 9785-9794.
    • (1995) Biochemistry , vol.34 , pp. 9785-9794
    • Girard, P.-M.1    Bonnet-Mathonière, B.2    Muriaux, D.3    Paoletti, J.4
  • 16
    • 0030480505 scopus 로고    scopus 로고
    • A short autocomplementary sequence plays an essential role in Avian sarcoma-leukosis virus RNA dimerization
    • 16. Fossé, P., Motté, N., Roumier, A., Gabus, C., Muriaux, D., Darlix, J.-L. & Paoletti, J. (1996) A short autocomplementary sequence plays an essential role in Avian sarcoma-leukosis virus RNA dimerization. Biochemistry 35, 16601-16609.
    • (1996) Biochemistry , vol.35 , pp. 16601-16609
    • Fossé, P.1    Motté, N.2    Roumier, A.3    Gabus, C.4    Muriaux, D.5    Darlix, J.-L.6    Paoletti, J.7
  • 17
    • 0027996464 scopus 로고
    • Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA
    • 17. Paillart, J.-C., Marquet, R., Skripnin, E., Ehresmann, B. & Ehresmann, C. (1994) Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA. J. Biol. Chem. 269, 27486-27493.
    • (1994) J. Biol. Chem. , vol.269 , pp. 27486-27493
    • Paillart, J.-C.1    Marquet, R.2    Skripnin, E.3    Ehresmann, B.4    Ehresmann, C.5
  • 18
    • 0028904512 scopus 로고
    • RNA secondary structure and binding sites for gag gene products in the 5′ packaging signal of human immunodeficiency virus type 1
    • 18. Clever, J., Sassetti, C. & Parslow, T.G. (1995) RNA secondary structure and binding sites for gag gene products in the 5′ packaging signal of human immunodeficiency virus type 1. J. Virol. 69, 2101-2109.
    • (1995) J. Virol. , vol.69 , pp. 2101-2109
    • Clever, J.1    Sassetti, C.2    Parslow, T.G.3
  • 19
    • 9244219568 scopus 로고    scopus 로고
    • The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures
    • 19. McBride, M.S. & Panganiban, A.T. (1996) The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures. J. Virol. 70, 2963-2973.
    • (1996) J. Virol. , vol.70 , pp. 2963-2973
    • McBride, M.S.1    Panganiban, A.T.2
  • 22
    • 0030019828 scopus 로고    scopus 로고
    • Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation
    • 22. Laughrea, M. & Jetté, L. (1996) Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation. Biochemistry 35, 1589-1598.
    • (1996) Biochemistry , vol.35 , pp. 1589-1598
    • Laughrea, M.1    Jetté, L.2
  • 23
    • 0028338652 scopus 로고
    • Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions
    • 23. Fu, W., Gorelick, R.J. & Rein, A. (1994) Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions. J. Virol. 68, 5013-5018.
    • (1994) J. Virol. , vol.68 , pp. 5013-5018
    • Fu, W.1    Gorelick, R.J.2    Rein, A.3
  • 26
    • 33845555707 scopus 로고
    • Exchangeable proton NMR whithout base-line distorsion, using new strong-pulse sequence
    • 26. Plateau, P. & Guéron, M. (1982) Exchangeable proton NMR whithout base-line distorsion, using new strong-pulse sequence. J. Am. Chem. Soc. 104, 7310-7311.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 7310-7311
    • Plateau, P.1    Guéron, M.2
  • 27
    • 2642628181 scopus 로고
    • A two-dimensional nuclear Overhauser experiment with absorption phase in four quadrants
    • 27. States, D.J., Haberkorn, R.A. & Ruben, D.J. (1982) A two-dimensional nuclear Overhauser experiment with absorption phase in four quadrants. J. Mag. Res. 48, 286-292.
    • (1982) J. Mag. Res. , vol.48 , pp. 286-292
    • States, D.J.1    Haberkorn, R.A.2    Ruben, D.J.3
  • 29
    • 0028864424 scopus 로고
    • Studies of base pair kinetics by NMR measurement of proton exchange
    • 29. Guéron, M. & Leroy, J.L. (1995) Studies of base pair kinetics by NMR measurement of proton exchange. Methods Enzymol. 261, 383-413.
    • (1995) Methods Enzymol. , vol.261 , pp. 383-413
    • Guéron, M.1    Leroy, J.L.2
  • 30
    • 0026730765 scopus 로고
    • Recombinant human immunodeficiency virus type 1 nucleocapsid (NCp7) protein unwinds tRNA
    • 30. Khan, R. & Giedroc, D.P. (1992) Recombinant human immunodeficiency virus type 1 nucleocapsid (NCp7) protein unwinds tRNA. J. Biol. Chem. 267, 6689-6695.
    • (1992) J. Biol. Chem. , vol.267 , pp. 6689-6695
    • Khan, R.1    Giedroc, D.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.