Convergence of natural and artificial evolution on an RNA loop-loop interaction: The HIV-1 dimerization initiation site

RNA

Volumn 6, Issue 9, 2000, Pages 1267-1276

  Lodmell, J Stephen ^a,b   Ehresmann, Chantal ^a   Ehresmann, Bernard ^a   Marquet, Roland ^a  

^a CNRS   (France)

^b UNIVERSITY OF MONTANA   (United States)

Author keywords

Kissing loop complex; Noncanonical interactions; RNA dimer; RNA RNA interaction; SELEX

Indexed keywords

NUCLEOTIDE; VIRUS RNA;

ARTICLE; BASE PAIRING; BINDING AFFINITY; COMPLEX FORMATION; DIMERIZATION; EVOLUTION; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL;

CODON, INITIATOR; DIMERIZATION; DIRECTED MOLECULAR EVOLUTION; EVOLUTION, MOLECULAR; HIV-1; NUCLEIC ACID CONFORMATION; RNA, VIRAL;

EID: 0033827659     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838200000698     Document Type: Article

References (41)

1. Role of the DIS hairpin in replication of human immunodeficiency virus type 1
2. Antiretroviral therapy in Adults. Updated recommendations of the international AIDS Society-USA panel
3. Requirements for kissing-loop-mediated dimerization of human immunodeficiency virus RNA
4. Structural and functional aspects of RNA pseudoknots
5. Solution structure of the dimerization initiation site of HIV-1 genomic RNA
6. In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1
7. Antisense RNA
8. Complexes formed by complementary RNA stem-loops: Their formation, structures and interaction with ColE1 Rom protein
9. In vitro selection of RNA molecules that bind specific ligands
10. RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles
11. Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides
12. Antisense RNA regulation in prokaryotes: Rapid RNA/RNA interaction facilitated by a general U-turn loop structure
13. Determinants of RNA hairpin loop-loop complex stability
14. Evidence that a kissing loop structure facilitates genomic RNA dimerization in HIV-1
15. Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding
16. Amplification, mutation and selection of catalytic RNA
17. A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA
18. Variant effects of non-native kissing-loop hairpin palindromes on HIV replication and HIV RNA dimerization: Role of stem-loop B in HIV replication and HIV RNA dimerization
19. Bent helix formation between RNA hairpins with complementary loops
20. An RNA tertiary structure in the 3' untranslated region of enteroviruses is necessary for efficient replication
21. Crystal structure of yeast tRNA Asp
22. The structure of yeast tRNA(Asp). A model for tRNA interacting with messenger RNA
23. Dimerization of HIV-1Lai RNA at low ionic strength: An autocomplementary sequence in the 5' leader region is evidenced by an antisense oligonucleotide
24. A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis
25. Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA
26. Dimerization of retroviral genomic RNAs: Structural and functional implications
27. Non-canonical interactions in a kissing loop complex: The dimerization initiation site of HIV-1 genomic RNA
28. Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: A quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions
29. A new principle of RNA folding based on pseudoknotting
30. A long-range pseudoknot is required for activity of the Neurospora VS ribozyme
31. tRNA prefers to kiss
32. Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro
33. Infectious molecular clones with the non-homologous dimer initiation sequences found in different subtypes of human immunodeficiency virus type 1 can recombine and initiate a spreading infection in vitro
34. From RNA hairpins to kisses to pseudoknots
35. Control of ColE1 plasmid replication: The process of binding of RNA I to the primer transcript
36. Evolution of functional structures of RNA
37. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
38. Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: A fluorescence study
39. Antisense RNA control in bacteria, phages, and plasmids
40. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs