메뉴 건너뛰기




Volumn 8, Issue 1, 2008, Pages 83-93

Nucleotide sequence and phylogenetic analysis of a new potexvirus: Malva Mosaic Virus

Author keywords

Capsid; Flexiviridae; Genome; Phylogenetic analysis; Plant; Potexvirus; Replicase; RNA; Sequence; Virus

Indexed keywords

ADENINE; GENOMIC RNA; GUANINE;

EID: 36749038801     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2007.10.006     Document Type: Article
Times cited : (7)

References (43)
  • 3
    • 0346516630 scopus 로고    scopus 로고
    • Accelrys Inc., San Diego, Ca, USA
    • Anon. Wisconsin Package version 10.3 (2001), Accelrys Inc., San Diego, Ca, USA
    • (2001) Wisconsin Package version 10.3
  • 4
    • 0035221419 scopus 로고    scopus 로고
    • The DNA-repair protein AlkB. EGL-9 and leprecan define new families of 2-oxoglutarate- and iron-dependant dioxygenases
    • research0007.1-0007.8
    • Aravind L., and Koonin E.V. The DNA-repair protein AlkB. EGL-9 and leprecan define new families of 2-oxoglutarate- and iron-dependant dioxygenases. Genome Biol. 2 (2001) research0007.1-0007.8
    • (2001) Genome Biol. , vol.2
    • Aravind, L.1    Koonin, E.V.2
  • 7
    • 0037339840 scopus 로고    scopus 로고
    • Potato virus X: a model system for virus replication, movement and gene expression
    • Batten J.S., Yoshinari S., and Hemenway C. Potato virus X: a model system for virus replication, movement and gene expression. Mol. Plant Pathol. 4 (2003) 125-131
    • (2003) Mol. Plant Pathol. , vol.4 , pp. 125-131
    • Batten, J.S.1    Yoshinari, S.2    Hemenway, C.3
  • 8
    • 0025769405 scopus 로고
    • Triple gene block proteins of white clover mosaic potexvirus are required for transport
    • Beck D.L., Guilford P.J., Voot D.M., Andersen M.T., and Forster R.L. Triple gene block proteins of white clover mosaic potexvirus are required for transport. Virology 183 (1991) 695-702
    • (1991) Virology , vol.183 , pp. 695-702
    • Beck, D.L.1    Guilford, P.J.2    Voot, D.M.3    Andersen, M.T.4    Forster, R.L.5
  • 9
    • 25444493172 scopus 로고    scopus 로고
    • Bioinformatic mapping of AlkB homology domains in viruses
    • Bratlie M.S., and Drablos F. Bioinformatic mapping of AlkB homology domains in viruses. BMC Genomics 6 (2005) 1-15
    • (2005) BMC Genomics , vol.6 , pp. 1-15
    • Bratlie, M.S.1    Drablos, F.2
  • 10
    • 36749075106 scopus 로고    scopus 로고
    • Brunt, A.A., Crabtree, K., Dallwitz, M.J., Gibbs, A.J., Watson, L., Zurcher, E.J. (eds.) (1996 onwards). 'Plant Viruses Online: Descriptions and Lists from the VIDE Database. Version: 20th August 1996.' URL http://biology.anu.edu.au/Groups/MES/vide/.
  • 11
    • 17644387611 scopus 로고    scopus 로고
    • The complete sequence of the genomic RNA of an isolate of Lily virus X (genus Potexvirus)
    • Chen J., Shi Y.H., Adams M.J., and Chen J.P. The complete sequence of the genomic RNA of an isolate of Lily virus X (genus Potexvirus). Arch. Virol. 150 (2005) 825-832
    • (2005) Arch. Virol. , vol.150 , pp. 825-832
    • Chen, J.1    Shi, Y.H.2    Adams, M.J.3    Chen, J.P.4
  • 12
    • 0036527772 scopus 로고    scopus 로고
    • Characterization of a potyvirus and a potexvirus from Chinese Scallion
    • Chen J., Zheng H.Y., Chen J.P., and Adams M.J. Characterization of a potyvirus and a potexvirus from Chinese Scallion. Arch Virol. 147 (2002) 683-693
    • (2002) Arch Virol. , vol.147 , pp. 683-693
    • Chen, J.1    Zheng, H.Y.2    Chen, J.P.3    Adams, M.J.4
  • 13
    • 0036902807 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the genomic RNA of a French isolate of Pepino mosaic virus (PepMV)
    • Cotillon A.C., Girard M., and Ducouret S. Complete nucleotide sequence of the genomic RNA of a French isolate of Pepino mosaic virus (PepMV). Arch. Virol. 147 (2002) 2231-2238
    • (2002) Arch. Virol. , vol.147 , pp. 2231-2238
    • Cotillon, A.C.1    Girard, M.2    Ducouret, S.3
  • 14
    • 0031001430 scopus 로고    scopus 로고
    • Mutation of the GKS motif of the RNA-dependant RNA polymerase from Potato Virus X disables or eliminates virus replication
    • Davenport G.F., and Baulcombe D.C. Mutation of the GKS motif of the RNA-dependant RNA polymerase from Potato Virus X disables or eliminates virus replication. J. Gen. Virol. 78 (1997) 1247-1251
    • (1997) J. Gen. Virol. , vol.78 , pp. 1247-1251
    • Davenport, G.F.1    Baulcombe, D.C.2
  • 16
    • 0025784476 scopus 로고
    • Phylogeny of the capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation
    • Dolja V.V., Boyko V.P., Agranovsky A.A., and Koonin E.V. Phylogeny of the capsid proteins of rod-shaped and filamentous RNA plant viruses: two families with distinct patterns of sequence and probably structure conservation. Virology 184 (1991) 79-86
    • (1991) Virology , vol.184 , pp. 79-86
    • Dolja, V.V.1    Boyko, V.P.2    Agranovsky, A.A.3    Koonin, E.V.4
  • 17
    • 26844544361 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the new potexvirus "Alstroemeria virus X"
    • Fuji S., Shinoda K., Ikeda M., Furuya H., Naito H., and Fukumoto F. Complete nucleotide sequence of the new potexvirus "Alstroemeria virus X". Arch. Virol. 150 (2005) 2377-2385
    • (2005) Arch. Virol. , vol.150 , pp. 2377-2385
    • Fuji, S.1    Shinoda, K.2    Ikeda, M.3    Furuya, H.4    Naito, H.5    Fukumoto, F.6
  • 18
    • 17344363997 scopus 로고
    • Plantain Virus X: a New Potexvirus from Plantago lanceolata
    • Hammond J., and Hull R. Plantain Virus X: a New Potexvirus from Plantago lanceolata. J. Gen. Virol. 54 (1981) 75-90
    • (1981) J. Gen. Virol. , vol.54 , pp. 75-90
    • Hammond, J.1    Hull, R.2
  • 19
    • 0030771535 scopus 로고    scopus 로고
    • Expression of the coat protein of potato virus X from a dicistronic mRNA in transgenic potato plants
    • Hefferon K.L., Khalilian H., Xu H., and AbouHaidar M. Expression of the coat protein of potato virus X from a dicistronic mRNA in transgenic potato plants. J. Gen. Virol. 78 (1997) 3051-3059
    • (1997) J. Gen. Virol. , vol.78 , pp. 3051-3059
    • Hefferon, K.L.1    Khalilian, H.2    Xu, H.3    AbouHaidar, M.4
  • 20
    • 0028889588 scopus 로고
    • The conserved, hydrophilic and arginine-rich N-terminal domain of cucumovirus coat proteins contributes to their anomalous electrophoretic mobilities in sodium dodecylsulfate-polyacrylamide gels
    • Hu C.-C., and Ghabrial S.A. The conserved, hydrophilic and arginine-rich N-terminal domain of cucumovirus coat proteins contributes to their anomalous electrophoretic mobilities in sodium dodecylsulfate-polyacrylamide gels. J. Virol. Methods 55 (1995) 367-379
    • (1995) J. Virol. Methods , vol.55 , pp. 367-379
    • Hu, C.-C.1    Ghabrial, S.A.2
  • 21
    • 0026693586 scopus 로고
    • A contig assembly program based on sensitive detection of fragment overlaps
    • Huang X. A contig assembly program based on sensitive detection of fragment overlaps. Genomics 14 (1992) 18-25
    • (1992) Genomics , vol.14 , pp. 18-25
    • Huang, X.1
  • 22
    • 26844436463 scopus 로고    scopus 로고
    • The complete nucleotide sequence of hydrangea ringspot virus
    • Hughes P.L., Lawrence J.E., and Scott S.W. The complete nucleotide sequence of hydrangea ringspot virus. Arch. Virol. 150 (2005) 2339-2345
    • (2005) Arch. Virol. , vol.150 , pp. 2339-2345
    • Hughes, P.L.1    Lawrence, J.E.2    Scott, S.W.3
  • 23
    • 0036290319 scopus 로고    scopus 로고
    • RNA helicase activity of the plant virus movement proteins encoded by the first gene of the triple gene block
    • Kalinina N.O., Rakitina D.V., Solovyev A.G., Schiemann J., and Morozov S.Y. RNA helicase activity of the plant virus movement proteins encoded by the first gene of the triple gene block. Virology 296 (2002) 321-329
    • (2002) Virology , vol.296 , pp. 321-329
    • Kalinina, N.O.1    Rakitina, D.V.2    Solovyev, A.G.3    Schiemann, J.4    Morozov, S.Y.5
  • 24
    • 0030945688 scopus 로고    scopus 로고
    • Mutations that alter a conserved element upstream of the potato virus X triple gene block and coat protein genes affect subgenomic RNA accumulation
    • Kim K.H., and Hemenway C. Mutations that alter a conserved element upstream of the potato virus X triple gene block and coat protein genes affect subgenomic RNA accumulation. Virology 232 (1997) 187-197
    • (1997) Virology , vol.232 , pp. 187-197
    • Kim, K.H.1    Hemenway, C.2
  • 25
    • 0032580014 scopus 로고    scopus 로고
    • Genome characterization of a Korean isolate of Cymbidium mosaic virus
    • Kim J.D., Koo K.Y., and Chang M.U. Genome characterization of a Korean isolate of Cymbidium mosaic virus. Mol. Cells 8 (1998) 181-188
    • (1998) Mol. Cells , vol.8 , pp. 181-188
    • Kim, J.D.1    Koo, K.Y.2    Chang, M.U.3
  • 26
    • 0027504136 scopus 로고
    • Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences
    • Koonin E.V., and Dolja V.V. Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit. Rev. Biochem. Mol. Biol. 28 (1993) 375-430
    • (1993) Crit. Rev. Biochem. Mol. Biol. , vol.28 , pp. 375-430
    • Koonin, E.V.1    Dolja, V.V.2
  • 27
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5 2 (2004) 150-163
    • (2004) Brief Bioinform. , vol.5 , Issue.2 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 28
    • 33846511593 scopus 로고    scopus 로고
    • Proteasome-independent MHC class I cross-presentation mediated by papaya mosaic virus-like particles leads to the expansion of specific human T cells
    • Leclerc D., Beauseigle D., Denis J., Morin H., Pare C., Lamarre A., and Lapointe R. Proteasome-independent MHC class I cross-presentation mediated by papaya mosaic virus-like particles leads to the expansion of specific human T cells. J. Virol. 81 (2007) 1319-1326
    • (2007) J. Virol. , vol.81 , pp. 1319-1326
    • Leclerc, D.1    Beauseigle, D.2    Denis, J.3    Morin, H.4    Pare, C.5    Lamarre, A.6    Lapointe, R.7
  • 29
    • 0027510114 scopus 로고
    • Extreme resistance to Potato Virus X infection in plants expressing modified components of the putative viral replicase
    • Longstaff M., Brigneti G., Boccard F., Chapman S., and Baulcombe D. Extreme resistance to Potato Virus X infection in plants expressing modified components of the putative viral replicase. EMBO J. 12 (1993) 379-386
    • (1993) EMBO J. , vol.12 , pp. 379-386
    • Longstaff, M.1    Brigneti, G.2    Boccard, F.3    Chapman, S.4    Baulcombe, D.5
  • 30
    • 33846265219 scopus 로고    scopus 로고
    • High avidity binding of engineered papaya mosaic virus virus-like particles to resting spores of Plasmodiophora Brassicae
    • Morin H., Tremblay M.H., Plante E., Paré C., Majeau N., Hogue R., and Leclerc D. High avidity binding of engineered papaya mosaic virus virus-like particles to resting spores of Plasmodiophora Brassicae. J. Biotechnol. 128 (2007) 423-434
    • (2007) J. Biotechnol. , vol.128 , pp. 423-434
    • Morin, H.1    Tremblay, M.H.2    Plante, E.3    Paré, C.4    Majeau, N.5    Hogue, R.6    Leclerc, D.7
  • 32
    • 0037977967 scopus 로고    scopus 로고
    • Triple gene block: modular design of a multifunctional machine for plant virus movement
    • Morozov S.Y., and Solovyev A.G. Triple gene block: modular design of a multifunctional machine for plant virus movement. J. Gen. Virol. 84 (2003) 1351-1366
    • (2003) J. Gen. Virol. , vol.84 , pp. 1351-1366
    • Morozov, S.Y.1    Solovyev, A.G.2
  • 33
    • 26844496232 scopus 로고    scopus 로고
    • Narcissus mosaic potexvirus
    • Brunt A.A., Crabtree K., Dallwitz M.J., Gibbs A.J., and Watson L. (Eds), CAB International, Cambridge
    • Mowat W.P. Narcissus mosaic potexvirus. In: Brunt A.A., Crabtree K., Dallwitz M.J., Gibbs A.J., and Watson L. (Eds). Viruses of Plants: Description Lists from the VIDE Database (1996), CAB International, Cambridge 814-816
    • (1996) Viruses of Plants: Description Lists from the VIDE Database , pp. 814-816
    • Mowat, W.P.1
  • 34
    • 0026793857 scopus 로고
    • Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses
    • Rosanov M.N., Koonin E.V., and Gorbalenya A.E. Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J. Gen. Virol. 73 (1992) 2129-2134
    • (1992) J. Gen. Virol. , vol.73 , pp. 2129-2134
    • Rosanov, M.N.1    Koonin, E.V.2    Gorbalenya, A.E.3
  • 35
    • 0033228157 scopus 로고    scopus 로고
    • CapSelect: a highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs
    • Schmidt W.M., and Mueller M.W. CapSelect: a highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs. Nucleic Acids Res. 27 (1999) e31
    • (1999) Nucleic Acids Res. , vol.27
    • Schmidt, W.M.1    Mueller, M.W.2
  • 37
    • 7044222912 scopus 로고    scopus 로고
    • Strain diversity and conserved genome elements in Strawberry mild yellow edge virus
    • Thompson J.R., and Jelkmann W. Strain diversity and conserved genome elements in Strawberry mild yellow edge virus. Arch. Virol. 149 (2004) 1897-1909
    • (2004) Arch. Virol. , vol.149 , pp. 1897-1909
    • Thompson, J.R.1    Jelkmann, W.2
  • 40
    • 0035558424 scopus 로고    scopus 로고
    • Complete nucleotide sequence of Tulip virus X (TVX-J): the border between species and strains within the genus Potexvirus
    • Yamaji Y., Kagiwada S., Nakabayashi H., Ugaki M., and Namba S. Complete nucleotide sequence of Tulip virus X (TVX-J): the border between species and strains within the genus Potexvirus. Arch Virol. 146 (2001) 2309-2320
    • (2001) Arch Virol. , vol.146 , pp. 2309-2320
    • Yamaji, Y.1    Kagiwada, S.2    Nakabayashi, H.3    Ugaki, M.4    Namba, S.5
  • 41
    • 0034034081 scopus 로고    scopus 로고
    • Cell-to-cell movement of the 25k protein of potato virus X is regulated by three other viral proteins
    • Yang Y., Dind B., Baulcombe D.C., and Verchot J. Cell-to-cell movement of the 25k protein of potato virus X is regulated by three other viral proteins. Mol. Plant-Microbe Interact. 13 (2000) 599-605
    • (2000) Mol. Plant-Microbe Interact. , vol.13 , pp. 599-605
    • Yang, Y.1    Dind, B.2    Baulcombe, D.C.3    Verchot, J.4
  • 43
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 (2003) 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.