Characterization of an unusual cytoplasmic chimera detected in bolting garlic clones

Journal of the American Society for Horticultural Science

Volumn 132, Issue 5, 2007, Pages 664-669

  Ipek, Meryem ^a,b   Ipek, Ahmet ^a,c   Senalik, Douglas ^a,d   Simon, Philipp W ^a,d  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b ÇANAKKALE ONSEKIZ MART UNIVERSITY   (Turkey)

^c ULUDAG UNIVERSITY   (Turkey)

^d U S DAIRY FORAGE RESEARCH CENTER   (United States)

Author keywords

Allium sativum; Flowering; Marker; Mitochondria; Plastid

Indexed keywords

ALLIUM SATIVUM;

EID: 36649016238     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.132.5.664     Document Type: Article

References (34)

1. Al-Zahim, M., H.J. Newbury, and B.V. Ford-Lloyd. 1997. Classification of genetic variation in garlic (Allium sativum L.) revealed by RAPD. HortScience 32:1102-1104.
2. Bach, I.C. 2000. Molecular breeding of carrot (Daucus carota L.). Royal Veterinary and Agricultural University, Frederiksberg, Denmark, PhD Diss.
3. Bach, I.C., A. Olesen, and P.W. Simon. 2002. PCR-based markers to differentiate the mitochondrial genomes of petaloid and male fertile carrot (Daucus carota L.). Euphytica 127:353-365.
4. Devon, R.S., D.J. Porteous, and A.J. Brookes. 1995. Splinkerettes- improved vectorettes for greater efficiency in PCR walking. Nucl. Acids Res. 23:1644-1645.
5. Engeland, R.L. 1991. Growing great garlic: The definitive guide for organic gardeners and small farmers. Filaree Productions, Okanogan, WA.
6. Engelke, T., E. Agbicodo, and T. Tatlioglu. 2004b. Mitochondrial genome variation in Allium ampeloprasum and its wild relatives. Euphytica 137:181-191.
7. 1 inducing cytoplasm in chives derived from recombination events affecting the mitochondrial gene atp9. Theor. Appl. Genet. 104: 698-702.
8. Engelke, T., T. Terefe, and T. Tatlioglu. 2004a. A PCR-based marker-system monitoring CMS-(S), CMS-(T), and (N)-cytoplasm in the onion (Allium cepa L.). Theor. Appl. Genet. 107:162-167.
9. Etoh, T. 1985. Studies on the sterility in garlic, Allium sativum L. Memoirs of the Faculty Agr. (Kagoshima Univ.) 21:77-132.
10. Etoh, T. and P.W. Simon. 2002. Diversity, fertility and seed production of garlic, p. 101-117. In: H.D. Rabinowitch and L. Currah (eds.). Allium crop science: Recent advances. CAB International, New York.
11. Fütterer, J., A. Gisel, V. Iglesias, A. Kloti, B. Kost, O. Mittelsten-Scheid, G. Neuhaus, G. Neuhaus-Url, M. Schrott, R. Shillito, G. Spangenberg, and Z.Y. Wang. 1995. Standard molecular techniques for the analysis of transgenic plants, p. 215-218. In: I. Potrykus and G. Spangenberg (eds.). Gene transfer to plants. Springer-Verlag, New York.
12. Gutierres, S., B. Combettes, R. De Paepe, M. Mirande, C. Lelandais, F. Vedel, and P. Chetrit. 1999. In the Nicotiana sylvestris CMSII mutant, a recombination-mediated change 5′ to the first exon of the mitochondrial nad1 gene is associated with lack of the NADH: Ubiquinone oxidoreductase (complex I) NAD1 subunit. Eur. J. Biochem. 261:361-370.
13. Hahn, G. 1996. History, folk medicine and legendary uses of garlic, p. 1-34. In: H.P. Koch and L.D. Lawson (eds.). Garlic, the science and therapeutic application of Allium sativum L. and related species. 2nd ed. Williams and Wilkins, Baltimore, MD.
14. Havey, M.J. 1995. Cytoplasmic determinations using the polymerase chain reaction to aid in the extraction of maintainer lines from open-pollinated populations of onion. Theor. Appl. Genet. 90:263-268.
15. Helm, J. 1956. Die zu wurz- und speisezwecken kultivierten arten der gattung Allium L. Kulturpflanze 4:130-180.
16. Ipek, M., A. Ipek, S.G. Almquist, and P.W. Simon. 2005. Demonstration of linkage and development of the first low-density genetic map of garlic based on AFLP markers. Theor. Appl. Genet. 110: 228-236.
17. Ipek, M., A. Ipek, and P.W. Simon. 2003. Comparison of AFLPs, RAPD markers, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collections. J. Amer. Soc. Hort. Sci. 128:246-252.
18. Jones, H.A. and L.K. Mann. 1963. Onions and their allies. Leonard Hill Books, London.
19. Kamenetsky, R., I.L. Shafir, H. Zemah, A. Barzilay, and H.D. Rabinowitch. 2004. Environmental control of garlic growth and florogenesis. J. Amer. Soc. Hort. Sci. 129:144-151.
20. Koul, A.K., R.N. Gohil, and A. Langer. 1979. Prospects of breeding improved garlic in the light of its genetic and breeding systems. Euphytica 28:457-464.
21. Kubo, T., S. Nishizawa, A. Sugawara, N. Itchoda, A. Estiati, and T. Mikami. 2000. The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA). Nucl. Acids Res. 28:2571-2576.
22. Maass, H.I. and M. Klaas. 1995. Infraspecific differentiation of garlic (Allium sativum L.) by isozyme and RAPD markers. Theor. Appl. Genet. 91:89-97.
23. Maier, R.M., K. Neckermann, G.L. Igloi, and H. Kossel. 1995. Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J. Mol. Biol. 251:614-628.
24. National Center for Biotechnology Information. 2006. Basic Local Alignment Search Tool (BLAST) 23 Mar. 2006. 〈http://www. ncbi.nlm.nih.gov/BLAST/〉.
25. Notsu, Y., S. Masood, T. Nishikawa, N. Kubo, G. Akiduki, M. Nakazono, A. Hirai, and K. Kadowaki. 2002. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet. Genomics 268:434-445.
26. Pooler, M.R. and P.W. Simon. 1993. Characterization and classification of isozyme and morphological variation in a diverse collection of garlic clones. Euphytica 68:121-130.
27. Sato, Y. 1998. PCR amplification of CMS-specific mitochondrial nucleotide sequences to identify cytoplasmic genotypes of onion (Allium cepa L.). Theor. Appl. Genet. 96:367-370.
28. Sato, S., Y. Nakamura, T. Kaneko, E. Asamizu, and S. Tabata. 1999. Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res. 6:283-290.
29. Schnable, P.S. and R.P. Wise. 1998. The molecular basis of cytoplasmic male sterility and fertility restoration. Trend Plant Sci. 3:175-180.
30. Simon, P.W. and M.M. Jenderek. 2003. Flowering, seed production and the genesis of garlic breeding. Plant Breed. Rev. 23:211-244.
31. Takagi, H. 1990. Garlic (Allium sativum L.), p. 109-146. In: J.L. Brewster and H.D. Rabinowitch (eds.). Onions and allied crops: Biochemistry, food science, and minor crops. Vol. 3. CRC Press, Boca Raton, FL.
32. Triboush, S.O., N.G. Danilenko, and O.G. Davydenko. 1998. A method for isolation of chloroplast DNA and mitochondrial DNA from sunflower. Plant Mol. Biol. Rptr. 16:183-189.
33. Vedel, F., M. Pla, V. Vitart, S. Gutierres, P. Chetrit, and R. De Paepe. 1994. Molecular basis of nuclear and cytoplasmic male sterility in higher plants. Plant Physiol. Biochem. 32:601-618.
34. Zewdie, Y., M.J. Havey, J.P. Prince, and M.M. Jenderek. 2005. The first genetic linkages among expressed regions of the garlic genome. J. Amer. Soc. Hort. Sci. 130:569-574.