Single-strand conformation polymorphism of microsatellite for rapid strain typing of Candida albicans

Medical Mycology

Volumn 45, Issue 7, 2007, Pages 629-635

  Li, Juan ^a,b   Bai, Feng Yan ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Candida albicans; Microsatellite; SSCP; Strain typing

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; BLOOD ANALYSIS; CANDIDA ALBICANS; CONTROLLED STUDY; DNA EXTRACTION; FECES ANALYSIS; FUNGAL STRAIN; FUNGUS ISOLATION; GENETIC ANALYSIS; GENOTYPE; HUMAN; INTERMETHOD COMPARISON; MICROBIOLOGICAL EXAMINATION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RELIABILITY; SEQUENCE ANALYSIS; SINGLE STRAND CONFORMATION POLYMORPHISM; SPUTUM ANALYSIS; STRAIN IDENTIFICATION; URINALYSIS;

ALLELES; BASE SEQUENCE; CANDIDA ALBICANS; CANDIDIASIS; HUMANS; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; SEQUENCE ALIGNMENT;

CANDIDA ALBICANS;

EID: 36549062092     PISSN: 13693786     EISSN: 14602709     Source Type: Journal    
DOI: 10.1080/13693780701530950     Document Type: Article

References (34)

1. Sobel, JD. (1988) Pathogenesis and epidemiology of vulvovaginal candidiasis. Ann N Y Acad Sci, 544, pp. 547-557.
2. Sobel, JD. (1992) Pathogenesis and treatment of recurrent vulvovaginal candidiasis. Clin Infect Dis, 14, pp. S148-S153.
3. Edmond, MB, Wallace, SE and McClish, DK (1999) Nosocomial bloodstream infections in United States hospitals: A three-year analysis. Clin Infect Dis, 29, pp. 239-244.
4. Pfaller, MA, Jones, RN, Messer, SA, Edmond, MB and Wenzel, RP. (1998) National surveillance of nosocomial blood stream infection due to Candida albicans: Frequency of occurrence and antifungal susceptibility in the SCOPE Program. Diagn Microbiol Infect Dis, 31, pp. 327-332.
5. Gudlaugsson, O., Gillespie, S. and Lee, K. (2003) Attributable mortality of nosocomial candidemia, revisited. Clin Infect Dis, 37, pp. 1172-1177.
6. Barchiesi, F., Hollis, RJ and Poeta, M Del (1995) Transmission of fluconazole-resistant Candida albicans between patients with AIDS and oropharyngeal candidiasis documented by pulsed-field gel electrophoresis. Clin Infect Dis, 21, pp. 561-564.
7. Magee, BB, Souza, TM and Magee, PT. (1987) Strain and species identification by restriction length polymorphism in the ribosomal DNA repeats of Candida species. J Bacteriol, 169, pp. 1639-1643.
8. Schroppel, K., Rotman, M., Galask, R., Mac, K. and Soll, DR. (1994) Evolution and replacement of Candida albicans strains during recurrent vaginitis demonstrated by DNA fingerprinting. J Clin Microbiol, 32, pp. 2646-2654.
9. Blignaut, E., Pujol, C., Lockhart, S., Joly, S. and Soll, DR. (2002) Ca3 fingerprinting of Candida albicans isolates from human immunodeficiency virus-positive and healthy individuals reveals a new clade in South Africa. J Clin Microbiol, 40, pp. 826-836.
10. Pujol, C., Pfaller, M. and Soll, DR. (2002) Ca3 fingerprinting of Candida albicans bloodstream isolates from the United States, Canada, South America, and Europe reveals a European clade. J Clin Microbiol, 40, pp. 2729-2740.
11. Pujol, C., Joly, S. and Lockhart, SR (1997) Parity among the randomly amplified polymorphic DNA method, multilocus enzyme electrophoresis, and Southern blot hybridization with the moderately repetitive DNA probe Ca3 for fingerprinting Candida albicans. J Clin Microbiol, 35, pp. 2348-2358.
12. Schmid, J., Herd, S. and Hunter, PR (1999) Evidence for a general purpose genotype in Candida albicans, highly prevalent in multiple geographic regions, patient types and types of infection. Microbiology, 145, pp. 2405-2413.
13. Robert, F., Lebreton, F. and Bougnoux, ME (1995) Use of random amplified polymorphic DNA as a typing method for Candida albicans in epidemiological surveillance of a burn unit. J Clin Microbiol, 33, pp. 2366-2371.
14. Bougnoux, ME, Morand, S. and d'Enfert, C. (2002) Usefulness of multilocus sequence typing for characterization of clinical isolates of Candida albicans. J Clin Microbiol, 40, pp. 1290-1297.
15. Tavanti, A., Gow, NA, Senesi, S., Maiden, MC and Odds, FC. (2003) Optimization and validation of multilocus sequence typing for Candida albicans. J Clin Microbiol, 41, pp. 3765-3776.
16. Botterel, F., Cesterke, C., Costa, C. and Bretagne, S. (2001) Analysis of microsatellite markers of Candida albicans used for rapid typing. J Clin Microbiol, 39, pp. 4076-4081.
17. Bretagne, S., Costa, JM, Besmond, C., Carsique, R. and Calderone, R. (1997) Microsatellite polymorphism in the promoter sequence of the elongation factor 3 gene of Candida albicans as the basis for a typing system. J Clin Microbiol, 35, pp. 1777-1780.
18. Metzgar, D., van Belkum, A., Field, D., Haubrich, R. and Wills, C. (1998) Random amplification of polymorphic DNA and microsatellite genotyping of pre- and post- treatment isolates of Candida sp. from human immunodeficiency virus-infected patients on different fluconazole regimens. J Clin Microbiol, 36, pp. 2308-2313.
19. Sampaio, P., Gusmão, L. and Alves, C. (2003) Highly polymorphic microsatellite for identification of Candida albicans strains. J Clin Microbiol, 41, pp. 552-557.
20. Sampaio, P., Gusmão, L. and Correia, A. (2005) New microsatellite multiplex PCR for Candida albicans strain typing reveals microevolutionary changes. J Clin Microbiol, 43, pp. 3869-3876.
21. Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K. and Sekiya, T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single strand conformation polymorphisms. Proc Natl Acad Sci, 86, pp. 2766-2770.
22. Orita, M., Suzuki, Y., Sekiya, T. and Hayashi, K. (1989) Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics, 5, pp. 874-879.
23. Dockhorn-Dworniczak, B., Dworniczak, B. and Brömmelkamp, L. (1991) Non-isotopic detection of single strand conformation polymorphism (PCR-SSCP): A rapid and sensitive technique in diagnosis of phenylketonuria. Nucleic Acids Res, 19, p. 2500.
24. Hayashi, K. (1991) PCR-SSCP: A simple and sensitive method for detection of mutations in the genomic DNA. PCR Methods Appl, 1, pp. 34-38.
25. Hauser, PM, Francioli, P., Bille, J., Telenti, A. and Blanc, DS. (1997) Typing of Pneumocystis carinii f. sp. hominis by single-strand conformation polymorphism of four genomic regions. J Clin Microbiol, 35, pp. 3086-3091.
26. Kong, P., Hong, C., Richardson, PA and Gallegly, ME. (2003) Single-strand-conformation polymorphism of ribosomal DNA for rapid species differentiation in genus Phytophthora. Fungal Gen Biol, 39, pp. 238-249.
27. Kumar, M. and Shukla, PK. (2005) Use of PCR targeting of internal transcribed spacer regions and single-stranded conformation polymorphism analysis of sequence variation in different regions of rRNA genes in fungi for rapid diagnosis of mycotic keratitis. J Clin Microbiol, 43, pp. 662-668.
28. Kumeda, Y. and Asao, T. (1996) Single-strand conformation polymorphism analysis of PCR-amplified ribosomal DNA internal transcribed spacers to differentiate species of Aspergillus section Flavi. Appl Environ Microbiol, 62, pp. 2947-2952.
29. Walsh, TJ, Francesconi, A., Kasai, M. and Chanock, SJ. (1995) PCR and single-strand conformational polymorphism for recognition of medically important opportunistic fungi. J Clin Microbiol, 33, pp. 3216-3220.
30. Kurtzman, CP and Ribnett, CJ. (1997) Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5' end of the large-subunit (26S) ribosomal DNA gene. J Clin Microbiol, 35, pp. 1216-1223.
31. Kaiser, C., Michaelis, S. and Mitchell, A. (1994) Methods in Yeast Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
32. Beidler, JL, Hilliard, PR and Rill, RL. (1982) Ultrasensitive staining of nucleic acids with silver. Anal Biochem, 126, pp. 374-380.
33. Hunter, PR and Gaston, MA. (1988) Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity. J Clin Microbiol, 26, pp. 2465-2466.
34. Soll, DR. (2000) The ins and outs of DNA fingerprinting the infectious fungi. Clin Microbiol Rev, 13, pp. 332-370.