-
1
-
-
0031780508
-
Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA operons in representatives of the Escherichia coli ECOR collection
-
doi:10.1007/ PL00006363
-
Antón, A.I., Martínez-Murcia, A.J., and Rodríguez-Valera, F. 1998. Sequence diversity in the 16S-23S intergenic spacer region (ISR) of the rRNA operons in representatives of the Escherichia coli ECOR collection. J. Mol. Evol. 47: 62-72. doi:10.1007/ PL00006363.
-
(1998)
J. Mol. Evol
, vol.47
, pp. 62-72
-
-
Antón, A.I.1
Martínez-Murcia, A.J.2
Rodríguez-Valera, F.3
-
2
-
-
0019513663
-
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
-
doi:10.1016/0022-2836(81)90508-8
-
Brosius, J., Dull, T.J., Sleeter, D.D., and Noller, H.F. 1981. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148: 107-127. doi:10.1016/0022-2836(81)90508-8.
-
(1981)
J. Mol. Biol
, vol.148
, pp. 107-127
-
-
Brosius, J.1
Dull, T.J.2
Sleeter, D.D.3
Noller, H.F.4
-
3
-
-
0035054443
-
Strain-specific differentiation of environmental Escherichia coli isolates via denaturing gradient gel electrophoresis (DGGE) analysis of the 16S-23S intergenic spacer region
-
Buchan, A., Alber, M., and Hodsom, R.E. 2001. Strain-specific differentiation of environmental Escherichia coli isolates via denaturing gradient gel electrophoresis (DGGE) analysis of the 16S-23S intergenic spacer region. FEMS Microbiol. Ecol. 35: 313-321.
-
(2001)
FEMS Microbiol. Ecol
, vol.35
, pp. 313-321
-
-
Buchan, A.1
Alber, M.2
Hodsom, R.E.3
-
4
-
-
0035320662
-
Identification of fecal Escherichia coli from humans and animals by ribotyping
-
doi:10.1128/AEM.67. 4.1503-1507.2001
-
Carson, C.A., Shear, B.L., Ellersieck, M.R., and Asfaw, A. 2001. Identification of fecal Escherichia coli from humans and animals by ribotyping. Appl. Environ. Microbiol. 67: 1503-1507. doi:10.1128/AEM.67. 4.1503-1507.2001.
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 1503-1507
-
-
Carson, C.A.1
Shear, B.L.2
Ellersieck, M.R.3
Asfaw, A.4
-
5
-
-
0030024243
-
Sequence heterogeneities among 16S ribosomal RNA sequences, and their effects on phylogenetic analyses at the species level
-
Cilia, V., Lafay, B., and Christen, R. 1996. Sequence heterogeneities among 16S ribosomal RNA sequences, and their effects on phylogenetic analyses at the species level. Mol. Biol. Evol. 13: 451-461.
-
(1996)
Mol. Biol. Evol
, vol.13
, pp. 451-461
-
-
Cilia, V.1
Lafay, B.2
Christen, R.3
-
6
-
-
0028989750
-
Survival of fecal microorganisms in marine and freshwater sediments
-
Davies, C.M., Long, L.A., Donald, M., and Ashbolt, N.J. 1995. Survival of fecal microorganisms in marine and freshwater sediments. Appl. Environ. Microbiol. 61: 1888-1896.
-
(1995)
Appl. Environ. Microbiol
, vol.61
, pp. 1888-1896
-
-
Davies, C.M.1
Long, L.A.2
Donald, M.3
Ashbolt, N.J.4
-
7
-
-
0034130242
-
Use of repetitive DNA sequence and the PCR to differentiate Escherichia coli isolates from human and animal sources
-
doi:10.1128/AEM.66.6.2572-2577.2000
-
Dombek, P.E., Johnson, L.K., Zimmerley, S.T., and Sadowsky, M.J. 2000. Use of repetitive DNA sequence and the PCR to differentiate Escherichia coli isolates from human and animal sources. Appl. Environ. Microbiol. 66: 2572-2577. doi:10.1128/AEM.66.6.2572-2577.2000.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 2572-2577
-
-
Dombek, P.E.1
Johnson, L.K.2
Zimmerley, S.T.3
Sadowsky, M.J.4
-
8
-
-
0342369384
-
Simultaneous detection and differentiation of Escherichia coli populations from environmental freshwaters by means of sequence variations in a fragment of the β-D-glucuronidase gene
-
doi:10.1128/AEM.66.4.1340-1346. 2000
-
Farnleitner, A.H., Kreuzinger, N., Kavka, G.G., Grillenberger, S., Rath, J., and Mach, R.L. 2000. Simultaneous detection and differentiation of Escherichia coli populations from environmental freshwaters by means of sequence variations in a fragment of the β-D-glucuronidase gene. Appl. Environ. Microbiol. 66: 1340-1346. doi:10.1128/AEM.66.4.1340-1346. 2000.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 1340-1346
-
-
Farnleitner, A.H.1
Kreuzinger, N.2
Kavka, G.G.3
Grillenberger, S.4
Rath, J.5
Mach, R.L.6
-
9
-
-
0023410106
-
The long-term survival of Escherichia coli in river water
-
Flint, K.P. 1987. The long-term survival of Escherichia coli in river water. J. Appl. Bacteriol. 63: 261-270.
-
(1987)
J. Appl. Bacteriol
, vol.63
, pp. 261-270
-
-
Flint, K.P.1
-
10
-
-
0031697075
-
Identification of Brucella by ribosomal-spacer-region PCR and differentiation of Brucella canis from other Brucella spp. pathogenic for humans by carbohydrate profiles
-
Fox, K.F., Nagpal, M., Steinberg, P., and Heroux, K. 1998. Identification of Brucella by ribosomal-spacer-region PCR and differentiation of Brucella canis from other Brucella spp. pathogenic for humans by carbohydrate profiles. J. Clin. Microbiol. 36: 3217-3222.
-
(1998)
J. Clin. Microbiol
, vol.36
, pp. 3217-3222
-
-
Fox, K.F.1
Nagpal, M.2
Steinberg, P.3
Heroux, K.4
-
11
-
-
0036701963
-
Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence
-
doi:10.1128/JCM.40.8.2779-2785.2002
-
Fukushima, M., Kakinuma, K., and Kawaguchi, R. 2002. Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence. J. Clin. Microbiol. 40: 2779-2785. doi:10.1128/JCM.40.8.2779-2785.2002.
-
(2002)
J. Clin. Microbiol
, vol.40
, pp. 2779-2785
-
-
Fukushima, M.1
Kakinuma, K.2
Kawaguchi, R.3
-
12
-
-
0029957951
-
Comparison of the small 16S to 23S intergenic spacer region (ISR) of the rRNA operons of some Escherichia coli strains of the ECOR collection and E. coli K-12
-
García-Martínez, J., Matínez-Murcia, A., Antón, A.I., and Rodríguez-Valera, F. 1996a. Comparison of the small 16S to 23S intergenic spacer region (ISR) of the rRNA operons of some Escherichia coli strains of the ECOR collection and E. coli K-12. J. Bacteriol. 178: 6374-6377.
-
(1996)
J. Bacteriol
, vol.178
, pp. 6374-6377
-
-
García-Martínez, J.1
Matínez-Murcia, A.2
Antón, A.I.3
Rodríguez-Valera, F.4
-
13
-
-
0030200198
-
Molecular evidence supporting the existence of two major groups in uropathogenic Escherichia coli
-
doi:10.1016/0928-8244(96)00037-5
-
García-Martínez, J., Matínez-Murcia, A., Rodríguez-Valera, A.F., and Antón, I. 1996b. Molecular evidence supporting the existence of two major groups in uropathogenic Escherichia coli. FEMS Immunol. Med. Microbiol. 14: 231-244. doi:10.1016/0928-8244(96)00037-5.
-
(1996)
FEMS Immunol. Med. Microbiol
, vol.14
, pp. 231-244
-
-
García-Martínez, J.1
Matínez-Murcia, A.2
Rodríguez-Valera, A.F.3
Antón, I.4
-
14
-
-
0033135694
-
Use of the 16S-23S ribosomal genes spacer region in studies of prokaryotic diversity
-
doi:10.1016/S0167-7012(99)00011-1
-
García-Martínez, J., Acinas, S.G., Antón, A.I., and Rodríguez-Valera, F. 1999. Use of the 16S-23S ribosomal genes spacer region in studies of prokaryotic diversity. J. Microbiol. Methods, 36: 55-64. doi:10.1016/S0167-7012(99)00011-1.
-
(1999)
J. Microbiol. Methods
, vol.36
, pp. 55-64
-
-
García-Martínez, J.1
Acinas, S.G.2
Antón, A.I.3
Rodríguez-Valera, F.4
-
15
-
-
0034996147
-
Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination
-
Gordon, D.M. 2001. Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination. Microbiology (Reading, U.K.), 147: 1079-1085.
-
(2001)
Microbiology (Reading, U.K.)
, vol.147
, pp. 1079-1085
-
-
Gordon, D.M.1
-
16
-
-
0036272875
-
Development of a procedure for discriminating among Escherichia coli isolates form animal and human sources
-
doi:10.1128/AEM.68.6.2690-2698.2002
-
Guan, S., Xu, R., Chen, S., Odumeru, J., and Gyles, C. 2002. Development of a procedure for discriminating among Escherichia coli isolates form animal and human sources. Appl. Environ. Microbiol. 68: 2690-2698. doi:10.1128/AEM.68.6.2690-2698.2002.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 2690-2698
-
-
Guan, S.1
Xu, R.2
Chen, S.3
Odumeru, J.4
Gyles, C.5
-
17
-
-
0037863753
-
Deer diet affects ribotypes diversity of Escherichia coli for bacterial source tracking
-
doi:10.1016/S0043-1354(03)00170-2
-
Hartel, P.G., Summer, J.D., and Segars, W.I. 2003. Deer diet affects ribotypes diversity of Escherichia coli for bacterial source tracking. Water Res. 37: 3263-3268. doi:10.1016/S0043-1354(03)00170-2.
-
(2003)
Water Res
, vol.37
, pp. 3263-3268
-
-
Hartel, P.G.1
Summer, J.D.2
Segars, W.I.3
-
18
-
-
0034115792
-
The genetic diversity of predominant Escherichia coli strains isolated from cattle fed various amounts of hay and grain
-
Jarvisa, G.N., Kizoulis, M.G., Diez-Gonzalez, F., and Russel, J.B. 2000. The genetic diversity of predominant Escherichia coli strains isolated from cattle fed various amounts of hay and grain. FEMS Microbiol. Ecol. 32: 225-233.
-
(2000)
FEMS Microbiol. Ecol
, vol.32
, pp. 225-233
-
-
Jarvisa, G.N.1
Kizoulis, M.G.2
Diez-Gonzalez, F.3
Russel, J.B.4
-
19
-
-
0027461618
-
Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms
-
Jensen, M.A., Webster, J.A., and Straus, N. 1993. Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl. Environ. Microbiol. 59: 945-952.
-
(1993)
Appl. Environ. Microbiol
, vol.59
, pp. 945-952
-
-
Jensen, M.A.1
Webster, J.A.2
Straus, N.3
-
20
-
-
0033983384
-
Target genes for virulence assessment of Escherichia coli isolates from water, food and the environment
-
doi:10.1111/j.1574-6976. 2000.tb00535.x
-
Kuhnert, P., Boerlin, P., and Frey, J. 2000. Target genes for virulence assessment of Escherichia coli isolates from water, food and the environment. FEMS Microbiol. Rev. 24: 107-117. doi:10.1111/j.1574-6976. 2000.tb00535.x.
-
(2000)
FEMS Microbiol. Rev
, vol.24
, pp. 107-117
-
-
Kuhnert, P.1
Boerlin, P.2
Frey, J.3
-
21
-
-
1642345523
-
A comparison of AFLP and ERIC-PCR analyses for discriminating Escherichia coli from cattle, pig and human sources
-
doi:10.1016/S0168-6496(03)00254-X
-
Leung, K.T., Mackereth, R., Tien, Y.C., and Topp, E. 2004. A comparison of AFLP and ERIC-PCR analyses for discriminating Escherichia coli from cattle, pig and human sources. FEMS Microbiol. Ecol. 47: 111-119. doi:10.1016/S0168-6496(03)00254-X.
-
(2004)
FEMS Microbiol. Ecol
, vol.47
, pp. 111-119
-
-
Leung, K.T.1
Mackereth, R.2
Tien, Y.C.3
Topp, E.4
-
22
-
-
0033759525
-
Gene conversion drives within genic sequences: Concerted evolution of ribosomal RNA genes in bacteria and archaea
-
Liao, D. 2000. Gene conversion drives within genic sequences: concerted evolution of ribosomal RNA genes in bacteria and archaea. J. Mol. Evol. 51: 305-317.
-
(2000)
J. Mol. Evol
, vol.51
, pp. 305-317
-
-
Liao, D.1
-
23
-
-
0038221147
-
Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting
-
doi:10.1128/AEM.69.5.2587-2594.2003
-
McLellan, S.L., Daniels, A.D., and Salmore, A.K. 2003. Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting. Appl. Environ. Microbiol. 69: 2587-2594. doi:10.1128/AEM.69.5.2587-2594.2003.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 2587-2594
-
-
McLellan, S.L.1
Daniels, A.D.2
Salmore, A.K.3
-
24
-
-
0033152336
-
DGGE/TGGE a method for identifying genes from natural ecosystems
-
doi:10.1016/S1369-5274(99) 80055-1
-
Muyzer, G. 1999. DGGE/TGGE a method for identifying genes from natural ecosystems. Curr. Opin. Microbiol. 2: 317-322. doi:10.1016/S1369-5274(99) 80055-1.
-
(1999)
Curr. Opin. Microbiol
, vol.2
, pp. 317-322
-
-
Muyzer, G.1
-
25
-
-
0032143012
-
Utility of 16S-23S rRNA spacer region methodology: How similar are interspace regions within a genome and between strains for closely related organisms?
-
doi:10.1016/S0167-7012(98)00054-2
-
Nagpal, M.L., Fox, K.F., and Fox, A. 1998. Utility of 16S-23S rRNA spacer region methodology: How similar are interspace regions within a genome and between strains for closely related organisms? J. Microbiol. Methods, 33: 211-219. doi:10.1016/S0167-7012(98)00054-2.
-
(1998)
J. Microbiol. Methods
, vol.33
, pp. 211-219
-
-
Nagpal, M.L.1
Fox, K.F.2
Fox, A.3
-
26
-
-
0032974775
-
Discriminant analysis of ribotype profiles of Escherichia coli for differentiating human and nonhuman sources of fecal pollution
-
Parveen, S., Portier, K.M., Robinson, K., Edmiston, L., and Tamplin, M.L. 1999. Discriminant analysis of ribotype profiles of Escherichia coli for differentiating human and nonhuman sources of fecal pollution. Appl. Environ. Microbiol. 65: 3142-3147.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3142-3147
-
-
Parveen, S.1
Portier, K.M.2
Robinson, K.3
Edmiston, L.4
Tamplin, M.L.5
-
27
-
-
0030200630
-
Molecular differentiation of bacteria by PCR amplification of the 16S-23S rRNA spacer
-
doi:10.1016/0167-7012(96) 00901-3
-
Scheinen, P., Krausse, R., Ullmann, U., Soller, R., and Krupp, G. 1996. Molecular differentiation of bacteria by PCR amplification of the 16S-23S rRNA spacer. J. Microbiol. Methods, 26: 103-117. doi:10.1016/0167-7012(96) 00901-3.
-
(1996)
J. Microbiol. Methods
, vol.26
, pp. 103-117
-
-
Scheinen, P.1
Krausse, R.2
Ullmann, U.3
Soller, R.4
Krupp, G.5
-
28
-
-
0036946650
-
Microbial source tracking: Current methodology and future directions
-
doi:10.1128/AEM.68.12.5796-5803. 2002
-
Scott, T.M., Rose, J.B., Jenkins, T.M., Farrah, S.R., and Lukasik, J. 2002. Microbial source tracking: current methodology and future directions. Appl. Environ. Microbiol. 68: 5796-5803. doi:10.1128/AEM.68.12.5796-5803. 2002.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 5796-5803
-
-
Scott, T.M.1
Rose, J.B.2
Jenkins, T.M.3
Farrah, S.R.4
Lukasik, J.5
-
29
-
-
0042529200
-
Use of the 16S-23S rRNA intergenic spacer region PCR and repetitive extragenic palindromic PCR analyses of Escherichia coli isolates to identify nonpoint fecal sources
-
doi:10.1128/AEM.69.8. 4942-4950.2003
-
Seurinck, S., Verstraete, W., and Siciliano, S.D. 2003. Use of the 16S-23S rRNA intergenic spacer region PCR and repetitive extragenic palindromic PCR analyses of Escherichia coli isolates to identify nonpoint fecal sources. Appl. Environ. Microbiol. 69: 4942-4950. doi:10.1128/AEM.69.8. 4942-4950.2003.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 4942-4950
-
-
Seurinck, S.1
Verstraete, W.2
Siciliano, S.D.3
-
30
-
-
0000023099
-
Attachment of a 40-base pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-bases changes
-
doi:10.1073/pnas.86.1.232
-
Sheffield, V.C., Cox, D.R., Lerman, L.S., and Myers, R.M. 1989. Attachment of a 40-base pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-bases changes. Proc. Natl. Acad. Sci. U.S.A. 86: 232-236. doi:10.1073/pnas.86.1.232.
-
(1989)
Proc. Natl. Acad. Sci. U.S.A
, vol.86
, pp. 232-236
-
-
Sheffield, V.C.1
Cox, D.R.2
Lerman, L.S.3
Myers, R.M.4
-
31
-
-
0032766627
-
Genetic structure of natural populations of Escherichia coli in wild hosts on different continents
-
Souza, V., Rocha, M., Valera, A., and Eguiarte, L.E. 1999. Genetic structure of natural populations of Escherichia coli in wild hosts on different continents. Appl. Environ. Microbiol. 65: 3373-3385.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3373-3385
-
-
Souza, V.1
Rocha, M.2
Valera, A.3
Eguiarte, L.E.4
-
32
-
-
20844456225
-
Comparison of seven protocols to identify fecal contamination sources using Escherichia coli
-
doi:10.1021/es0354519
-
Stoeckel, D.M., Mathers, M.V., Hyer, K.E., Hagedorn, C., Kator, H., Lukasik, J., et al. 2004. Comparison of seven protocols to identify fecal contamination sources using Escherichia coli. Environ. Sci. Technol. 38: 6109-6117. doi:10.1021/es0354519.
-
(2004)
Environ. Sci. Technol
, vol.38
, pp. 6109-6117
-
-
Stoeckel, D.M.1
Mathers, M.V.2
Hyer, K.E.3
Hagedorn, C.4
Kator, H.5
Lukasik, J.6
|