Halobacillus faecis sp. nov., a spore-forming bacterium isolated from a mangrove area on Ishigaki Island, Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 11, 2007, Pages 2476-2479

  An, Sun Young ^a   Kanoh, Kaneo ^b   Kasai, Hiroaki ^b   Goto, Keiichi ^c   Yokota, Akira ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b Marine Biotechnology Co Ltd   (Japan)

^c Mitsui Norin Co Ltd   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GUANINE; PEPTIDOGLYCAN; QUINONE DERIVATIVE; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA CONTENT; GRAM POSITIVE BACTERIUM; HALOBACILLUS FAECIS; HALOPHILIC BACTERIUM; JAPAN; MANGROVE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY;

BACILLACEAE; BACTERIAL TYPING TECHNIQUES; DNA, RIBOSOMAL; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RHIZOPHORACEAE; RIVERS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPORES, BACTERIAL;

BACTERIA (MICROORGANISMS); HALOBACILLUS; POSIBACTERIA;

EID: 36549029799     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64896-0     Document Type: Article

References (20)

1. Amoozegar, M. A., Malekzadeh, F., Malik K A., Schumann, P. & Spröer, C. (2003). Halobacillus karajensis sp. nov., a novel moderate halophile. Int J Syst Evol Microbiol 53, 1059-1063.
2. Claus, D., Fahmy, F., Rolf, H. J. & Tosunoglu, N. (1983). Sporosarcina halophila sp. nov., an obligate, slightly halophilic bacterium from salt marsh soils. Syst Appl Bacteriol 4, 496-506.
3. Collins, M. D. & Jones, D. (1981). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol Rev 45, 316-354.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometic deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Goto, K., Omura, T., Hara, Y. & Sadaie, Y. (2000). Application of the partial 16S rDNA sequence as an index for rapid identification of species in the genus Bacillus. J Gen Appl Microbiol 46, 1-8.
7. Goto, K., Mochida, K. M., Asahara, M., Suzuki, M. & Yokota, A. (2002). Application of the hypervariable region of the 16S rDNA sequence as an index for the rapid identification of species in the genus Alicyclobacillus. J Gen Appl Microbiol 48, 243-250.
8. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
9. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence aligiment. Brief Bioinform 5, 150-163.
10. Liu, W. Y., Zeng, J., Wang, L., Dou, Y. T. & Yang, S. S. (2005). Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China. Int J Syst Evol Microbiol 55, 1991-1996.
11. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
12. Mesbah, M, Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-perforinance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
14. Schleifer, K H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
15. Spring, S., Ludwig, W., Marquez, M. C., Ventosa, A. & Schleifer, K.-H. (1996). Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46, 492-496.
16. Thompson, J. D., Gibson, T. J., Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
17. Wayne, L. G., Brenner, D. J., Colwell, R. R, Grimont, P. A. D, Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
18. Yoon, J.-H., Kang, K. H. & Park, Y.-H. (2003). Halobacillus salinus sp. nov., isolated from a salt lake on the coast of the East Sea in Korea. Int i Syst Evol Microbiol 53, 687-693.
19. Yoon, J. H., Kang, K. H., Oh, T. K & Park, Y. H. (2004). Halobacillus locisalis sp. nov., a halophilic bacterium isolated from a marine solar saltern of the Yellow Sea in Korea. Extremophiles 8, 23-28.
20. Yoon, J.-H., Kang, S.-J., Lee, C.-H., Oh, H. W. & Oh, T.-K (2005). Halobacillus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea. Int J Syst Evol Microbiol 55, 2413-2417.