Stable stochastic dynamics in yeast cell cycle

Biophysical Journal

Volumn 93, Issue 10, 2007, Pages 3451-3459

  Okabe, Yurie ^a   Sasai, Masaki ^a,b  

^a NAGOYA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PROTEIN;

ARTICLE; BUDDING; CELL CYCLE; CONTROLLED STUDY; NOISE; NONHUMAN; OSCILLATION; STATISTICS; YEAST;

SACCHAROMYCETALES;

EID: 36549027537     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.107.109991     Document Type: Article

References (31)

1. Newman, J. R. S., S. Ghaemmaghami, J. Ihmels, D. K. Breslow, M. Noble, J. L. DeRisi, and J. S. Weissman. 2006. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature. 441:840-846.
2. Raser, J. M., and E. K. O'Shea. 2005. Noise in gene expression: origins, consequences, and control. Science. 309:2010-2013.
3. Sigal, A., R. Milo, A. Cohen, N. Geva-Zatorsky, Y. Klein, Y. Liron, N. Rosenfeld, T. Danon, N. Perzov, and U. Alon. 2006. Variability and memory of protein levels in human cells. Nature. 444:643-646.
4. Field, C., R. Li, and K. Oegema. 1999. Cytokinesis in eukaryotes: a mechanistic comparison. Curr. Opin. Cell Biol. 11:68-80.
5. Mendenhall, M. D., and A. E. Hodge. 1998. Regulation of Cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 62:1191-1243.
6. Novak, B., A. Csikasz-Nagy, B. Gyorffy, K. Nasmyth, and J. J. Tyson. 1998. Model scenarios for evolution of the eukaryotic cell cycle. Philos. Trans. R. Soc. Lond. B Biol. Sci. 353:2063-2076.
7. Chen, K. C., L. Calzone, A. Csikasz-Nagy, F. R. Cross, B. Novak, and J. J. Tyson. 2004. Integrative analysis of cell cycle control in budding yeast. Mol. Biol. Cell. 15:3841-3862.
8. Chen, K. C., A. Csikasz-Nagy, B. Gyorffy, J. Val, B. Novak, and J. J. Tyson. 2000. Kinetic analysis of a molecular model of the budding yeast cell cycle. Mol. Biol. Cell. 11:369-391.
9. Novak, B., and J. J. Tyson. 2003. Modelling the controls of the eukaryotic cell cycle. Biochem. Soc. Trans. 31:1526-1529.
10. Tyson, J. J., K. Chen, and B. Novak. 2001. Network dynamics and cell physiology. Nat. Rev. Mol. Cell Biol. 2:908-916.
11. Borisuk, M. T., and J. J. Tyson. 1998. Bifurcation analysis of a model of mitotic control in frog eggs. J. Theor. Biol. 195:69-85.
12. Nasmyth, K. 1996. At the heart of the budding yeast cell cycle. Trends Genet. 12:405-412.
13. Li, F., T. Long, Y. Lu, Q. Ouyang, and C. Tang. 2004. The yeast cellcycle network is robustly designed. Proc. Natl. Acad. Sci. USA. 101:4781-4786.
14. Cross, F. R., V. Archambault, M. Miller, and M. Klovstad. 2002. Testing a mathematical model of the yeast cell cycle. Mol. Biol. Cell. 13:52-70.
15. Doncic, A., E. Ben-Jacob, and N. Barkai. 2006. Noise resistance in the spindle assembly checkpoint. Mol. Syst. Biol. 2:2006.0027.
16. Zhang, Y., M. Qian, Q. Ouyang, M. Deng, F. Li, and C. Tang. 2006. Stochastic model of yeast cell-cycle network. Physica D. 219:35-39.
17. Wang, J., B. Huang, X. Xia, and Z. Sun. 2006. Funneled landscape leads to robustness of cell networks: yeast cell cycle. PLoS Comput. Biol. 2:1385-1394.
18. Blake, W. J., M. Kærn, C. R. Cantor, and J. J. Collins. 2003. Noise in eukaryotic gene expression. Nature. 422:633-637.
19. Raser, J. M., and E. K. O'Shea. 2004. Control of stochasticity in eukaryotic gene expression. Science. 304:1811-1814.
20. Elowitz, M. B., A. J. Levine, E. D. Siggia, and P. S. Swain. 2002. Stochastic gene expression in a single cell. Science. 297:1183-1186.
21. Guido, N. J., X. Wang, D. Adalsteinsson, D. McMillen, J. Hasty, C. R. Cantor, T. C. Elston, and J. J. Collins. 2006. A bottom-up approach to gene regulation. Nature. 439:856-860.
22. Spellman, P. T., G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein, and B. Futcher. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell. 9:3273-3297.
23. Melo, J., and D. Toczyski. 2002. A unified view of the DNA-damage checkpoint. Curr. Opin. Cell Biol. 14:237-245.
24. Bi, E., P. Maddox, D. J. Lew, E. D. Salmon, J. N. McMillan, E. Yeh, and J. R. Pringle. 1998. Involvement of an actomyosin contractile ring in Saccharomyces cerevisiae cytokinesis. J. Cell Biol. 142:1301-1312.
25. Shaw, S. L., P. Maddox, R. V. Skibbens, E. Yeh, E. D. Salmon, and K. Bloom. 1998. Nuclear and spindle dynamics in budding yeast. Mol. Biol. Cell. 9:1627-1631.
26. Yeh, E., R. V. Skibbens, J. W. Cheng, E. D. Salmon, and K. Bloom. 1995. Spindle dynamics and cell cycle regulation of dynein in the budding yeast, Saccharomyces cerevisiae. J. Cell Biol. 130:687-700.
27. Strunnikov, A. V. 2003. Condensin and biological role of chromosome condensation. Prog. Cell Cycle Res. 5:361-367.
28. Griffin, T. J., S. P. Gygi, T. Ideker, B. Rist, J. Eng, L. Hood, and R. Aebersold. 2002. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol. Cell. Proteomics. 1:323-333.
29. Sasai, M., and P. G. Wolynes. 2003. Stochastic gene expression as a many-body problem. Proc. Natl. Acad. Sci. USA. 100:2374-2379.
30. Wang, J., B. Huang, X. Xia, and Z. Sun. 2006. Funneled landscape leads to robustness of cellular networks: MAPK signal transduction. Biophys. J. 91:L54-L56.
31. Gillespie, D. T. 1977. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81:2340-2361.