메뉴 건너뛰기




Volumn 396, Issue , 2007, Pages 3-15

Computational prediction of domain interactions

Author keywords

Conserved domains; Data integration; Function prediction; Protein interactions

Indexed keywords

PROTEIN;

EID: 36549017999     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-515-6:3     Document Type: Article
Times cited : (4)

References (22)
  • 1
    • 0037453510 scopus 로고    scopus 로고
    • Assembly of cell regulatory systems through protein interaction domains
    • Pawson, T. and Nash, P. (2003) Assembly of cell regulatory systems through protein interaction domains. Science 300, 445-452.
    • (2003) Science , vol.300 , pp. 445-452
    • Pawson, T.1    Nash, P.2
  • 2
    • 0036086410 scopus 로고    scopus 로고
    • Recent improvements to the SMART domain-based sequence annotation resource
    • Letunic, I., Goodstadt, L., Dickens, N. J., et al. (2002) Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res. 30, 242-244.
    • (2002) Nucleic Acids Res , vol.30 , pp. 242-244
    • Letunic, I.1    Goodstadt, L.2    Dickens, N.J.3
  • 6
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
    • Xenarios, I., Salwinski, L., Duan, X. J., Higney, P., Kim, S. -M., and Eisenberg, D. (2002) DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 30, 303-305.
    • (2002) Nucleic Acids Res , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwinski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.-M.5    Eisenberg, D.6
  • 7
    • 0037245913 scopus 로고    scopus 로고
    • BIND: The Biomolecular Interaction Network Database
    • Bader, G. D., Betel, D., and Hogue, C. W. V. (2003) BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res. 31, 248-250.
    • (2003) Nucleic Acids Res , vol.31 , pp. 248-250
    • Bader, G.D.1    Betel, D.2    Hogue, C.W.V.3
  • 8
    • 9144236198 scopus 로고    scopus 로고
    • Human protein reference database as a discovery resource for proteomics
    • Peri, S., Navarro, J. D., Kristiansen, T. Z., et al. (2004) Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 32, D497-D501.
    • (2004) Nucleic Acids Res , vol.32
    • Peri, S.1    Navarro, J.D.2    Kristiansen, T.Z.3
  • 9
    • 20144387067 scopus 로고    scopus 로고
    • The MIPS mammalian proteinprotein interaction database
    • Pagel, P., Kovac, S., Oesterheld, M., et al. (2005) The MIPS mammalian proteinprotein interaction database. Bioinformatics 21, 832-834.
    • (2005) Bioinformatics , vol.21 , pp. 832-834
    • Pagel, P.1    Kovac, S.2    Oesterheld, M.3
  • 10
    • 13444249988 scopus 로고    scopus 로고
    • STRING: Known and predicted protein-protein associations, integrated and transferred across organisms
    • von Mering, C., Jensen, L. J., Snel, B., et al. (2005) STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33, D433-D437.
    • (2005) Nucleic Acids Res , vol.33
    • von Mering, C.1    Jensen, L.J.2    Snel, B.3
  • 12
    • 13844264506 scopus 로고    scopus 로고
    • iPfam: Visualization of proteinprotein interactions in PDB at domain and amino acid resolutions
    • Finn, R. D., Marshall, M., and Bateman, A. (2005) iPfam: visualization of proteinprotein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21, 410-412.
    • (2005) Bioinformatics , vol.21 , pp. 410-412
    • Finn, R.D.1    Marshall, M.2    Bateman, A.3
  • 13
    • 13444257903 scopus 로고    scopus 로고
    • 3did: Interacting protein domains of known three-dimensional structure
    • Stein, A., Russell, R. B., and Aloy, P. (2005) 3did: interacting protein domains of known three-dimensional structure. Nucleic Acids Res. 33, D413-D417.
    • (2005) Nucleic Acids Res , vol.33
    • Stein, A.1    Russell, R.B.2    Aloy, P.3
  • 14
    • 34548084807 scopus 로고    scopus 로고
    • Inferring protein domain interactions from databases of interacting proteins
    • Riley, R., Lee, C., Sabatti, C., and Eisenberg, D. (2005) Inferring protein domain interactions from databases of interacting proteins. Genome Biol. 6, R89.
    • (2005) Genome Biol , vol.6
    • Riley, R.1    Lee, C.2    Sabatti, C.3    Eisenberg, D.4
  • 15
    • 0036799752 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • Deng, M., Mehta, S., Sun, F., and Chen, T. (2002) Inferring domain-domain interactions from protein-protein interactions. Genome Res. 12, 1540-1548.
    • (2002) Genome Res , vol.12 , pp. 1540-1548
    • Deng, M.1    Mehta, S.2    Sun, F.3    Chen, T.4
  • 16
    • 33746600939 scopus 로고    scopus 로고
    • Predicting protein-protein interactions from protein domains using a set cover approach
    • Submitted manuscript
    • Huang, C., Kanaan, S. P., Wuchty, S., Chen, D. Z., and Izaguirre, J. A. (2004) Predicting protein-protein interactions from protein domains using a set cover approach. Submitted manuscript.
    • (2004)
    • Huang, C.1    Kanaan, S.P.2    Wuchty, S.3    Chen, D.Z.4    Izaguirre, J.A.5
  • 17
    • 0642343787 scopus 로고    scopus 로고
    • Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair
    • Kim, W. K., Park, J., and Suh, J. K. (2002) Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair. Genome Inform. Ser. Workshop Genome Inform. 13, 42-50.
    • (2002) Genome Inform. Ser. Workshop Genome Inform , vol.13 , pp. 42-50
    • Kim, W.K.1    Park, J.2    Suh, J.K.3
  • 18
    • 9244239761 scopus 로고    scopus 로고
    • A domain interaction map based on phylogenetic profiling
    • Pagel, P., Wong, P., and Frishman, D. (2004) A domain interaction map based on phylogenetic profiling. J. Mol. Biol. 344, 1331-1346.
    • (2004) J. Mol. Biol , vol.344 , pp. 1331-1346
    • Pagel, P.1    Wong, P.2    Frishman, D.3
  • 21
    • 0035943340 scopus 로고    scopus 로고
    • Correlated sequence-signatures as markers of protein-protein interaction
    • Sprinzak, E. and Margalit, H. (2001) Correlated sequence-signatures as markers of protein-protein interaction. J. Mol. Biol. 311, 681-692.
    • (2001) J. Mol. Biol , vol.311 , pp. 681-692
    • Sprinzak, E.1    Margalit, H.2
  • 22
    • 33645818955 scopus 로고    scopus 로고
    • The DIMA web resource: Exploring the protein domain network
    • Pagel, P., Oesterheld, M., Stumpften, V., and Frishman, D. (2006) The DIMA web resource: exploring the protein domain network. Bioinformatics 22, 997-998.
    • (2006) Bioinformatics , vol.22 , pp. 997-998
    • Pagel, P.1    Oesterheld, M.2    Stumpften, V.3    Frishman, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.