-
1
-
-
0037453510
-
Assembly of cell regulatory systems through protein interaction domains
-
Pawson, T. and Nash, P. (2003) Assembly of cell regulatory systems through protein interaction domains. Science 300, 445-452.
-
(2003)
Science
, vol.300
, pp. 445-452
-
-
Pawson, T.1
Nash, P.2
-
2
-
-
0036086410
-
Recent improvements to the SMART domain-based sequence annotation resource
-
Letunic, I., Goodstadt, L., Dickens, N. J., et al. (2002) Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res. 30, 242-244.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 242-244
-
-
Letunic, I.1
Goodstadt, L.2
Dickens, N.J.3
-
3
-
-
0032952825
-
New features of the Blocks Database servers
-
Henikoff, J. G., Henikoff, S., and Pietrokovski, S. (1999) New features of the Blocks Database servers. Nucleic Acids Res. 27, 226-228.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 226-228
-
-
Henikoff, J.G.1
Henikoff, S.2
Pietrokovski, S.3
-
4
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A., Coin, L., Durbin, R., et al. (2004) The Pfam protein families database. Nucleic Acids Res. 32, D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
-
5
-
-
13444282474
-
InterPro, progress and status in 2005
-
Mulder, N. J., Apweiler, R., Attwood T. K., et al. (2005) InterPro, progress and status in 2005. Nucleic Acids Res. 33, D201-D205.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
-
6
-
-
0036088133
-
DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
-
Xenarios, I., Salwinski, L., Duan, X. J., Higney, P., Kim, S. -M., and Eisenberg, D. (2002) DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 30, 303-305.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.-M.5
Eisenberg, D.6
-
7
-
-
0037245913
-
BIND: The Biomolecular Interaction Network Database
-
Bader, G. D., Betel, D., and Hogue, C. W. V. (2003) BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res. 31, 248-250.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.V.3
-
8
-
-
9144236198
-
Human protein reference database as a discovery resource for proteomics
-
Peri, S., Navarro, J. D., Kristiansen, T. Z., et al. (2004) Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 32, D497-D501.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Peri, S.1
Navarro, J.D.2
Kristiansen, T.Z.3
-
9
-
-
20144387067
-
The MIPS mammalian proteinprotein interaction database
-
Pagel, P., Kovac, S., Oesterheld, M., et al. (2005) The MIPS mammalian proteinprotein interaction database. Bioinformatics 21, 832-834.
-
(2005)
Bioinformatics
, vol.21
, pp. 832-834
-
-
Pagel, P.1
Kovac, S.2
Oesterheld, M.3
-
10
-
-
13444249988
-
STRING: Known and predicted protein-protein associations, integrated and transferred across organisms
-
von Mering, C., Jensen, L. J., Snel, B., et al. (2005) STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33, D433-D437.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
von Mering, C.1
Jensen, L.J.2
Snel, B.3
-
11
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., Westbrook, J., Feng, Z., et al. (2000) The Protein Data Bank. Nucleic Acids Res. 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
-
12
-
-
13844264506
-
iPfam: Visualization of proteinprotein interactions in PDB at domain and amino acid resolutions
-
Finn, R. D., Marshall, M., and Bateman, A. (2005) iPfam: visualization of proteinprotein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21, 410-412.
-
(2005)
Bioinformatics
, vol.21
, pp. 410-412
-
-
Finn, R.D.1
Marshall, M.2
Bateman, A.3
-
13
-
-
13444257903
-
3did: Interacting protein domains of known three-dimensional structure
-
Stein, A., Russell, R. B., and Aloy, P. (2005) 3did: interacting protein domains of known three-dimensional structure. Nucleic Acids Res. 33, D413-D417.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Stein, A.1
Russell, R.B.2
Aloy, P.3
-
14
-
-
34548084807
-
Inferring protein domain interactions from databases of interacting proteins
-
Riley, R., Lee, C., Sabatti, C., and Eisenberg, D. (2005) Inferring protein domain interactions from databases of interacting proteins. Genome Biol. 6, R89.
-
(2005)
Genome Biol
, vol.6
-
-
Riley, R.1
Lee, C.2
Sabatti, C.3
Eisenberg, D.4
-
15
-
-
0036799752
-
Inferring domain-domain interactions from protein-protein interactions
-
Deng, M., Mehta, S., Sun, F., and Chen, T. (2002) Inferring domain-domain interactions from protein-protein interactions. Genome Res. 12, 1540-1548.
-
(2002)
Genome Res
, vol.12
, pp. 1540-1548
-
-
Deng, M.1
Mehta, S.2
Sun, F.3
Chen, T.4
-
16
-
-
33746600939
-
Predicting protein-protein interactions from protein domains using a set cover approach
-
Submitted manuscript
-
Huang, C., Kanaan, S. P., Wuchty, S., Chen, D. Z., and Izaguirre, J. A. (2004) Predicting protein-protein interactions from protein domains using a set cover approach. Submitted manuscript.
-
(2004)
-
-
Huang, C.1
Kanaan, S.P.2
Wuchty, S.3
Chen, D.Z.4
Izaguirre, J.A.5
-
17
-
-
0642343787
-
Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair
-
Kim, W. K., Park, J., and Suh, J. K. (2002) Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair. Genome Inform. Ser. Workshop Genome Inform. 13, 42-50.
-
(2002)
Genome Inform. Ser. Workshop Genome Inform
, vol.13
, pp. 42-50
-
-
Kim, W.K.1
Park, J.2
Suh, J.K.3
-
18
-
-
9244239761
-
A domain interaction map based on phylogenetic profiling
-
Pagel, P., Wong, P., and Frishman, D. (2004) A domain interaction map based on phylogenetic profiling. J. Mol. Biol. 344, 1331-1346.
-
(2004)
J. Mol. Biol
, vol.344
, pp. 1331-1346
-
-
Pagel, P.1
Wong, P.2
Frishman, D.3
-
19
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
-
Pellegrini, M., Marcotte, E. M., Thompson, M. J., Eisenberg, D., and Yeates, T. O. (1999) Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl. Acad. Sci. USA 96, 4285-4288.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
20
-
-
13444283829
-
The PEDANT genome database in 2005
-
Riley, M. L., Schmidt, T., Wagner, C., Mewes, H. -W., and Frishman, D. (2005) The PEDANT genome database in 2005. Nucleic Acids Res. 33, D308-D310.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Riley, M.L.1
Schmidt, T.2
Wagner, C.3
Mewes, H.-W.4
Frishman, D.5
-
21
-
-
0035943340
-
Correlated sequence-signatures as markers of protein-protein interaction
-
Sprinzak, E. and Margalit, H. (2001) Correlated sequence-signatures as markers of protein-protein interaction. J. Mol. Biol. 311, 681-692.
-
(2001)
J. Mol. Biol
, vol.311
, pp. 681-692
-
-
Sprinzak, E.1
Margalit, H.2
-
22
-
-
33645818955
-
The DIMA web resource: Exploring the protein domain network
-
Pagel, P., Oesterheld, M., Stumpften, V., and Frishman, D. (2006) The DIMA web resource: exploring the protein domain network. Bioinformatics 22, 997-998.
-
(2006)
Bioinformatics
, vol.22
, pp. 997-998
-
-
Pagel, P.1
Oesterheld, M.2
Stumpften, V.3
Frishman, D.4
|