Flavobacterium ceti sp. nov., isolated from beaked whales (Ziphius cavirostris)

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 11, 2007, Pages 2604-2608

  Vela, A I ^a   Fernandez, A ^b   Sanchez Porro C ^c   Sierra, E ^b   Mendez, M ^b   Arbelo, M ^b   Ventosa, A ^c   Dominguez L ^a   Fernandez Garayzabal J F ^a  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

^b UNIVERSITY OF LAS PALMAS DE GRAN CANARIA   (Spain)

^c UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; CYTOSINE; GUANINE; OXIDOREDUCTASE; RNA 16S;

ARTICLE; BACTERIUM ISOLATION; BIOCHEMISTRY; CELL STRUCTURE; CONTROLLED STUDY; DNA CONTENT; FLAVOBACTERIUM; FLAVOBACTERIUM CETI; FLAVOBACTERIUM JOHNSONIAE; GENUS; GRAM NEGATIVE BACTERIUM; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SPECIES IDENTIFICATION; WHALE;

ANIMALS; BACTERIAL TYPING TECHNIQUES; DNA, RIBOSOMAL; FLAVOBACTERIACEAE INFECTIONS; FLAVOBACTERIUM; GENES, RRNA; LIVER; LUNG; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; WHALES;

BACTERIA (MICROORGANISMS); CETACEA; FLAVOBACTERIACEAE; FLAVOBACTERIUM; FLAVOBACTERIUM DEGERLACHEI; FLAVOBACTERIUM FRIGIDIMARIS; FLAVOBACTERIUM HIBERNUM; FLAVOBACTERIUM JOHNSONIAE; NEGIBACTERIA; ZIPHIIDAE; ZIPHIUS CAVIROSTRIS;

EID: 36549011259     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65154-0     Document Type: Article

References (32)

1. Arahal, D. R., Garcia, M. T., Vargas, C., Canovas, D., Nieto, J. J. & Ventosa, A. (2001). Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174. Int J Syst Evol Microbiol 51, 1457-1462.
2. Bergey, D. H., Harrison, F. C., Breed, R. S., Hammer, B. W. & Huntoon, F. M. (1923). Bergey's Manual of Determinative Bacteriology. Baltimore: Williams & Wilkins.
3. Bernardet J. F. & Bowman, J. P. (2006). The genus Flavobacterium. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 481-531. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
4. Bernardet, J. F. & Nakagawa, Y. (2006). An introduction to the family Flavobacteriaceae. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 455-480. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
5. Bernardet J. F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
6. Bernardet J. F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
7. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
8. Bowman, J. P., Cavanagh, J., Austin, J. J. & Sanderson, K. (1996). Novel Psychrobacter species from Antarctic ornithogenic soils. Int J Syst Bacteriol 46, 841-848.
9. Cousin, S., Päuker, O. & Stackebrandt, E. (2007). Flavobacterium aquidurense sp. nov. and Flavobacterium hercynium sp. nov., from a hard-water creek. Int J Syst Evol Microbiol 57, 243-249.
10. De Ley, J. & Tijtgat, R. (1970). Evaluation of membrane filter methods for DNA-DNA hybridization. Antonie van Leeuwenhoek 36, 461-474.
11. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
12. Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 655-681. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
13. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
14. Kim, B.-Y., Weon, H.-Y., Cousin, S., Yoo, S.-H., Kwon, S.-W., Go, S.-J. & Stackebrandt, E. (2006). Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea. Int J Syst Evol Microbiol 56, 1645-1649.
15. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
16. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
17. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-219.
18. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
19. McCammon, S. A., Innes, B. H., Bowman, J. P., Franzmann, P. D., Dobson, S. J., Holloway, P. E, Skerratt, J. H., Nichols, P. D. & Rankin, L. M. (1998). Flavobacterium hibernum sp. nov., a lactose-utilizing bacterium from a freshwater Antarctic lake. Int J Syst Bacteriol 48, 1405-1412.
20. Nogi, Y., Soda, K. & Oikawa, T. (2005). Flavobacterium frigidimaris sp. nov., isolated from Antarctic seawater. Syst Appl Microbiol 28, 310-315.
21. Page, R. D. M. (1996). TreeView. an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
22. Pearson, W. R. (1994). Using the FASTA program to search protein and DNA sequence databases. Methods Mol Biol 24, 307-331.
23. Rasmussen, S. W. (1995). DNATools, a software package for DNA sequence analysis. Copenhagen: Carlsberg Laboratory.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-653. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
26. Van Trappen, S., Mergaert, J. & Swings, J. (2003). Flavobacterium gelidilacus sp. nov., isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 53, 1241-1245.
27. Van Trappen, S., Vandecandelaere, I., Mergaert, J. & Swings, J. (2004). Flavobacterium degerlachei sp. nov., Flavobacterium frigoris sp. nov. and Flavobacterium micromati sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 85-92.
28. Vancanneyt, M., Segers, P., Torck, U, Hoste, B., Bernardet, J.-F., Vandamme, P. & Kersters, K. (1996). Reclassification of Flavobacterium odoratum (Stutzer 1929) strains to a new genus, Myroides, as Myroides odoratus comb. nov. and Myroides odoratimimus sp. nov. Int J Syst Bacteriol 46, 926-932.
29. Vela, A. I., Collins, M. D., Lawson, P. A., García, N., Domínguez, L. & Fernández-Garayzábal, J. F. (2005). Uruburuella suis gen. nov., sp. nov. , isolated from clinical specimens of pigs. Int J Syst Evol Microbiol 55, 643-647.
30. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
31. Yi, H. & Chun, J. (2006). Flavobacterium weaverense sp. nov. and Flavobacterium segetis sp. nov., novel psychrophiles isolated from the Antarctic. Int J Syst Evol Microbiol 56, 1239-1244.
32. Yoon, J., Maneerat, S., Hawal, F. & Yokota, A. (2006). Myroides pelagicus sp. nov., isolated from seawater in Thailand. Int J Syst Evol Microbiol 56, 1917-1920.