Site-specific binding affinities within the H2B tail domain indicate specific effects of lysine acetylation

Journal of Biological Chemistry

Volumn 282, Issue 45, 2007, Pages 32867-32876

  Wang, Xiaodong ^a   Hayes, Jeffrey J ^a  

^a UNIVERSITY OF ROCHESTER MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLATION; BIOCHEMISTRY; DNA; MOLECULAR MECHANICS; PROTEINS;

BINDING AFFINITIES; CHROMATIN; LYSINES; MUTATIONS; NUCLEOSOMES;

AMINO ACIDS;

HISTONE H2B; LYSINE;

ACETYLATION; ARTICLE; BINDING AFFINITY; BINDING SITE; DNA SEQUENCE; MATHEMATICAL MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN INTERACTION;

ACETYLATION; AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; BIOMIMETIC MATERIALS; DNA; HISTONES; LYSINE; MOLECULAR SEQUENCE DATA; NUCLEOSOMES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; XENOPUS;

EID: 36349000493     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M706035200     Document Type: Article

References (60)

1. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Nature 389, 251-260
2. van Holde, K. E. (1989) Chromatin, Springer-Verlag Inc., New York
3. Thoma, F., Koller, T., and Klug, A. (1979) J. Cell Biol. 83, 403-427
4. Woodcock, C. L., and Dimitrov, S. (2001) Curr. Opin. Genet. Dev. 11, 130-135
5. Hansen, J. C. (2002) Annu. Rev. Biophys. Biomol. Struct. 31, 361-392
6. Belmont, A. S., and Bruce, K. (1994) J. Cell Biol. 127, 287-302
7. Dorigo, B., Schalch, T., Kulangara, A., Duda, S., Schroeder, R. R., and Richmond, T. J. (2004) Science 306, 1571-1573
8. Schalch, T., Duda, S., Sargent, D. F., and Richmond, T. J. (2005) Nature 436, 138-141
9. Arents, G., Burlingame, R. W., Wang, B. C., Love, W. E., and Moudrianakis, E. N. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 10148-10152
10. Fletcher, T. M., and Hansen, J. C. (1995) J. Biol. Chem. 270, 25359-25362
11. Bohm, L., and Crane-Robinson, C. (1984) Biosci. Rep. 4, 365-386
12. Becker, P. B. (2006) Nature 442, 31-32
13. Kan, P. Y., Lu, X., Hansen, J. C., and Hayes, J. J. (2007) Mol. Cell. Biol. 27, 2084-2091
14. Zheng, C., Lu, X., Hansen, J. C., and Hayes, J. J. (2005) J. Biol. Chem. 280, 33552-33557
15. Cary, P. D., Moss, T., and Bradbury, E. M. (1978) Eur. J. Biochem. 89, 475-482
16. Hilliard, P. R., Jr., Smith, R. M., and Rill, R. L. (1986) J. Biol. Chem. 261, 5992-5998
17. Walker, I. O. (1984) Biochemistry 23, 5622-5628
18. Smith, R. M., and Rill, R. L. (1989) J. Biol. Chem. 264, 10574-10581
19. Wang, X., Moore, S. C., Laszckzak, M., and Ausio, J. (2000) J. Biol. Chem. 275, 35013-35020
20. Baneres, J. L., Martin, A., and Parello, J. (1997) J. Mol. Biol. 273, 503-508
21. Lee, K. M., and Hayes, J. J. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 8959-8964
22. Lee, K. M., and Hayes, J. J. (1998) Biochemistry 37, 8622-8628
23. Zheng, C., and Hayes, J. J. (2003) J. Biol. Chem. 278, 24217-24224
24. Shogren-Knaak, M., Ishii, H., Sun, J. M., Pazin, M. J., Davie, J. R., and Peterson, C. L. (2006) Science 311, 844-847
25. Allfrey, V. G., Faulkner, R., and Mirsky, A. E. (1964) Proc. Natl. Acad. Sci. U. S. A. 51, 786-794
26. Grunstein, M. (1997) Nature 389, 349-352
27. Mizzen, C. A., and Allis, C. D. (2000) Science 289, 2290-2291
28. Strahl, B. D., and Allis, C. D. (2000) Nature 403, 41-45
29. Turner, B. M. (2000) BioEssays 22, 836-845
30. Lee, D. Y., Hayes, J. J., Pruss, D., and Wolffe, A. P. (1993) Cell 72, 73-84
31. Vettese-Dadey, M., Grant, P. A., Hebbes, T. R., Crane-Robinson, C., Allis, C. D., and Workman, J. L. (1996) EMBO J. 15, 2508-2518
32. Tse, C., Sera, T., Wolffe, A. P., and Hansen, J. C. (1998) Mol. Cell. Biol. 18, 4629-4638
33. Garcia-Ramirez, M., Rocchini, C., and Ausio, J. (1995) J. Biol. Chem. 270, 17923-17928
34. Ridsdale, J. A., Hendzel, M. J., Delcuve, G. P., and Davie, J. R. (1990) J. Biol. Chem. 265, 5150-5156
35. Cary, P. D., Crane-Robinson, C., Bradbury, E. M., and Dixon, G. H. (1982) Eur. J. Biochem. 127, 137-143
36. Hong, L., Schroth, G. P., Matthews, H. R., Yau, P., and Bradbury, E. M. (1993) J. Biol. Chem. 268, 305-314
37. Mutskov, V., Gerber, D., Angelov, D., Ausio, J., Workman, J., and Dimitrov, S. (1998) Mol. Cell. Biol. 18, 6293-6304
38. Zheng, C., and Hayes, J. J. (2003) Biopolymers 68, 539-546
39. Hayes, J. J., and Lee, K. M. (1997) Methods (San Diego) 12, 2-9
40. Carruthers, L. M., Tse, C., Walker, K. P., III, and Hansen, J. C. (1999) Methods Enzymol. 304, 19-35
41. Gloss, L. M., and Placek, B. J. (2002) Biochemistry 41, 14951-14959
42. Polach, K. J., and Widom, J. (1995) J. Mol. Biol. 254, 130-149
43. Shore, D., Langowski, J., and Baldwin, R. L. (1981) Proc. Natl. Acad. Sci. U. S. A. 78, 4833-4837
44. Walker, I. O., and Wolffe, A. P. (1984) Biochim. Biophys. Acta 785, 97-103
45. Mangenot, S., Leforestier, A., Vachette, P., Durand, D., and Livolant, F. (2002) Biophys. J. 82, 345-356
46. Ballestar, E., and Franco, L. (1997) Biochemistry 36, 5963-5969
47. Hecht, A., Laroche, T., Strahl-Bolsinger, S., Gasser, S. M., and Grunstein, M. (1995) Cell 80, 583-592
48. Recht, J., Tsubota, T., Tanny, J. C., Diaz, R. L., Berger, J. M., Zhang, X., Garcia, B. A., Shabanowitz, J., Burlingame, A. L., Hunt, D. F., Kaufman, P. D., and Allis, C. D. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 6988-6993
49. Peterson, C. L., and Laniel, M. A. (2004) Curr. Biol. 14, R546-R551
50. Waterborg, J. H. (2000) J. Biol. Chem. 275, 13007-13011
51. Bonenfant, D., Coulot, M., Towbin, H., Schindler, P., and van Oostrum, J. (2006) Mol. Cell. Proteomics 5, 541-552
52. Angelov, D., Vitolo, J. M., Mutskov, V., Dimitrov, S., and Hayes, J. J. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 6599-6604
53. Usachenko, S. I., Bavykin, S. G., Gavin, I. M., and Bradbury, E. M. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 6845-6849
54. Simpson, R. T., Thoma, F., and Brubaker, J. M. (1985) Cell 42, 799-808
55. Lowary, P. T., and Widom, J. (1998) J. Mol. Biol. 276, 19-42
56. Hansen, J. C., Tse, C., and Wolffe, A. P. (1998) Biochemistry 37, 17637-17641
57. Wang, X., and Hayes, J. J. (2006) Biochem. Cell Biol. 84, 578-588
58. Fischle, W., Wang, Y., Jacobs, S. A., Kim, Y., Allis, C. D., and Khorasanizadeh, S. (2003) Genes Dev. 17, 1870-1881
59. Berndsen, C. E., Selleck, W., McBryant, S. J., Hansen, J. C., Tan, S., and Denu, J. M. (2007) Biochemistry 46, 2091-2099
60. Dion, M. F., Altschuler, S. J., Wu, L. F., and Rando, O. J. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 5501-5506