Origin of highly pathogenic H5N1 avian influenza virus in China and genetic characterization of donor and recipient viruses

Journal of General Virology

Volumn 88, Issue 11, 2007, Pages 3094-3099

  Mukhtar, Muhammad Mahmood ^a   Rasool, Sahibzada T ^a   Song, Degui ^b   Zhu, Chengliang ^a   Hao, Qian ^a   Zhu, Ying ^a   Wu, Jianguo ^a  

^a WUHAN UNIVERSITY   (China)

^b GUANGXI NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

HEMAGGLUTININ; SIALIDASE;

ARTICLE; ASIA; CHINA; DONOR; GENE MUTATION; GENETIC ANALYSIS; INFLUENZA VIRUS A H5N1; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RECIPIENT; VIRUS CHARACTERIZATION; VIRUS GENE; VIRUS ISOLATION;

ANIMALS; CHINA; DUCKS; EVOLUTION, MOLECULAR; GEESE; GENES, VIRAL; HEMAGGLUTININS, VIRAL; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA A VIRUS, H3N8 SUBTYPE; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; MUTATION; PHYLOGENY; REASSORTANT VIRUSES; RNA REPLICASE; SEQUENCE HOMOLOGY, NUCLEIC ACID; VIRAL PROTEINS;

AVIAN INFLUENZA VIRUS;

EID: 36249003887     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.83129-0     Document Type: Article

References (28)

1. Alexander, D. J. (2000). A review of avian influenza in different bird species. Vet Microbial 74, 3-13.
2. Bender, C., Hall, H., Huang, J., Klimov, A., Cox, N. J., Gregory, V., Cameron, K., Lim, W. & Subbarao, K. (1999). Characterization of the surface protein of influenza A (H5N1) viruses isolated from humans in 1997-1998. Virology 254, 115-123.
3. Chang, S., Zhang, J., Liao, X., Zhu, X., Wang, D., Zhu, J., Feng, T., Zhu, B., Gao, G. F. & other authors (2007). Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucleic Acids Res 35 (Database issue), D376-D380.
4. Gabriel, G., Dauber, B., Wolff, T., Planz, O., Klenk, H. D. & Stech, J. (2005). The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host. Proc Natl Acad Sci U S A 102, 18590-18595.
5. Gao, P., Watanabe, S., Ito, T., Goto, H., Wells, K., McGregor, M., Cooley, A. J. & Kawaoka, Y. (1999). Biological heterogeneity, including systemic replication in mice, of H5N1 influenza A virus isolates from humans in Hong Kong. J Virol 73, 3184-3189.
6. Guan, Y., Shortridge, K. F., Krauss, S. & Webster, R. G. (1999). Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong? Proc Natl Acad Sci U S A 96, 9363-9367.
7. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large pbylogenies by maximum likelihood. Syst Biol 52, 696-704.
8. Hatta, M., Gao, P., Halfmann, P. & Kawaoka, Y. (2001). Molecular basis for high virulence of Hong Kong H5N1 influenza A viruses. Science 293, 1840-1842.
9. Hiromoto, Y., Yamazaki, Y., Fukushima, T., Saito, T., Lindstrom, S., Omoe, K., Nerome, R., Lim, W., Sugita, S. & Nerome, K. (2000). Evolutionary characterization of the six internal genes of H5N1 human influenza A virus. J Gen Virol 81, 1293-1303.
10. Hoffmann, E., Stech, J., Leneva, I., Krauss, S., Scholtissek, C., Chin, P. S., Peiris, M., Shortridge, K. F. & Webster, R. G. (2000). Characterization of the influenza A virus gene pool in avian species in southern China: was H6N1 a derivative or a precursor of H5N1? J Virol 74, 6309-6315.
11. Katz, J. M., Lu, X., Tumpey, T. M., Smith, C. B., Shaw, M. W. & Subbarao, K. (2000). Molecular correlates of influenza A H5N1 virus pathogenesis in mice. J Virol 74, 10807-10810.
12. Kawaoka, Y., Naeve, C. W. & Webster, R. G. (1984). Is virulence of H5N2 influenza viruses in chickens associated with loss of carbohydrate from the hemagglutinin? Virology 139, 303-316.
13. Krug, R. M. (2006). Clues to the virulence of H5N1 viruses in humans. Science 311, 1562-1563.
14. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
15. Ludwig, S., Schultz, U., Mandler, J., Fitch, W. M. & Scholtissek, C. (1991). Phylogenetic relationship of the nonstructural (NS) genes of influenza A viruses. Virology 183, 566-577.
16. Macken, C., Lu, H., Goodman, J. & Boykin, L. (2001). The value of a database in surveillance and vaccine selection. In Options for the Control of Influenza IV: proceedings of the World Congress on Options for the Control of Influenza IV, Crete, 23-28 September 2000, pp. 103-106. Edited by A. D. M. E. Osterhaus, N. Cox & A. W. Hampson. Amsterdam: Elsevier Science.
17. NCBI (2007). Influenza Virus Resource. Available from http://www.ncbi.nlm.nih.gov/genomes/FLU/
18. Obenauer, J. C., Denson, J., Mehta, P. K., Su, X., Mukatira, S., Finkelstein, D. B., Xu, X., Wang, J., Ma, J. & other authors (2006). Large-scale sequence analysis of avian influenza isolates. Science 311, 1576-1580.
19. Scholtissek, C., Burger, H., Kistner, O. & Shortridge, K. F. (1985). The nucleoprotein as a possible major factor in determining host specificity of influenza H3N2 viruses. Virology 147, 287-294.
20. Senne, D. A., Panigrahy, B., Kawaoka, Y., Pearson, J. E., Suss, J., Lipkind, M., Kida, H. & Webster, R. G. (1996). Survey of the hemagglutinin (HA) cleavage site sequence of H5 and H7 avian influenza viruses: amino acid sequence at the HA cleavage site as a marker of pathogenicity potential. Avian Dis 40, 425-437.
21. Seo, S. H., Hoffmann, E. & Webster, R. G. (2002). Lethal H5N1 influenza viruses escape host anti-viral cytokine responses. Nat Med 8, 950-954.
22. Sims, L. D., Domenech, J., Benigno, C., Kahn, S., Kamata, A., Lubroth, J., Martin, V. & Roeder, P. (2005). Origin and evolution of highly pathogenic H5N1 avian influenza in Asia. Vet Rec 157, 159-164.
23. Subbarao, K. & Shaw, M. W. (2000). Molecular aspects of avian influenza (H5N1) viruses isolated from humans. Rev Med Virol 10, 337-348.
24. Subbarao, E. K., London, W. & Murphy, B. R. (1993). A single amino acid in the PB2 gene of influenza A virus is a determinant of host range. J Virol 67, 1761-1764.
25. Subbarao, K., Klimov, A., Katz, J., Regnery, H., Lim, W., Hall, H., Perdue, M., Swayne, D., Bender, C. & other authors (1998). Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness. Science 279, 393-396.
26. Wood, G. W., Banks, J., McCauley, J. W. & Alexander, D. J. (1994). Deduced amino acid sequences of the hemagglutinin of H5N1 avian influenza virus isolates from an outbreak in turkeys in Norfolk, England. Arch Virol 134, 185-194.
27. Xu, X., Subbarao, K., Cox, N. J. & Guo, Y. (1999). Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong. Virology 261, 15-19.
28. Zhou, N. N., Shortridge, K. F., Claas, E. C. J., Krauss, S. L. & Webster, R. G. (1999). Rapid evolution of H5N1 influenza viruses in chickens in Hong Kong. J Virol 73, 3366-3374.