-
1
-
-
2242491786
-
Persistence of tertiary structure in 7.9 M guanidinium chloride: The case of endo-beta-1,3-glucanase from Pyrococcus furiosus
-
Chiaraluce R, Van Der Oost J, Lebbink JH, Kaper T Consalvi V (2002) Persistence of tertiary structure in 7.9 M guanidinium chloride: the case of endo-beta-1,3-glucanase from Pyrococcus furiosus. Biochemistry 41, 14624 14632.
-
(2002)
Biochemistry
, vol.41
, pp. 14624-14632
-
-
Chiaraluce, R.1
Van Der Oost, J.2
Lebbink, J.H.3
Kaper, T.4
Consalvi, V.5
-
2
-
-
15944393537
-
Calcium-induced tertiary structure modifications of endo-beta-1,3- glucanase from Pyrococcus furiosus in 7.9 M guanidinium chloride
-
Chiaraluce R, Gianese G, Angelaccio S, Florio R, van Lieshout JF, van der Oost J Consalvi V (2005) Calcium-induced tertiary structure modifications of endo-beta-1,3-glucanase from Pyrococcus furiosus in 7.9 M guanidinium chloride. Biochem J 386, 515 524.
-
(2005)
Biochem J
, vol.386
, pp. 515-524
-
-
Chiaraluce, R.1
Gianese, G.2
Angelaccio, S.3
Florio, R.4
Van Lieshout, J.F.5
Van Der Oost, J.6
Consalvi, V.7
-
3
-
-
0001973467
-
Carbohydrate-active enzymes: An integrated database approach
-
In. Gilbert, H.J., Davies, G.J., Henrissat, B. Svensson, B., eds), pp. Royal Society of Chemistry, Cambridge.
-
Coutinho PM, Henrissat B (1999) Carbohydrate-active enzymes: an integrated database approach. In Recent Advances in Carbohydrate Bioengineering (Gilbert HJ, Davies GJ, Henrissat B Svensson B, eds), pp. 3 12. Royal Society of Chemistry, Cambridge.
-
(1999)
Recent Advances in Carbohydrate Bioengineering
, pp. 3-12
-
-
Coutinho, P.M.1
Henrissat, B.2
-
4
-
-
9344241402
-
Molecular modeling of family GH16 glycoside hydrolases: Potential roles for xyloglucan transglucosylases/hydrolases in cell wall modification in the poaceae
-
Strohmeier M, Hrmova M, Fischer M, Harvey AJ, Fincher GB Pleiss J (2004) Molecular modeling of family GH16 glycoside hydrolases: potential roles for xyloglucan transglucosylases/hydrolases in cell wall modification in the poaceae. Protein Sci 13, 3200 3213.
-
(2004)
Protein Sci
, vol.13
, pp. 3200-3213
-
-
Strohmeier, M.1
Hrmova, M.2
Fischer, M.3
Harvey, A.J.4
Fincher, G.B.5
Pleiss, J.6
-
5
-
-
0344012467
-
The three-dimensional structures of two beta-agarases
-
Allouch J, Jam M, Helbert W, Barbeyron T, Kloareg B, Henrissat B Czjzek M (2003) The three-dimensional structures of two beta-agarases. J Biol Chem 278, 47171 47180.
-
(2003)
J Biol Chem
, vol.278
, pp. 47171-47180
-
-
Allouch, J.1
Jam, M.2
Helbert, W.3
Barbeyron, T.4
Kloareg, B.5
Henrissat, B.6
Czjzek, M.7
-
6
-
-
0031437663
-
Molecular and biochemical characterization of an endo-β-1,3- glucanase of the hyperthermophilic archaeon Pyrococcus furiosus
-
Gueguen Y, Voorhorst WG, van der Oost J de Vos WM (1997) Molecular and biochemical characterization of an endo-β-1,3-glucanase of the hyperthermophilic archaeon Pyrococcus furiosus. J Biol Chem 272, 31258 31264.
-
(1997)
J Biol Chem
, vol.272
, pp. 31258-31264
-
-
Gueguen, Y.1
Voorhorst, W.G.2
Van Der Oost, J.3
De Vos, W.M.4
-
7
-
-
0027383834
-
Patterns of nonadditivity between pairs of stability mutations in staphylococcal nuclease
-
Green SM Shortle D (1993) Patterns of nonadditivity between pairs of stability mutations in staphylococcal nuclease. Biochemistry 32, 10131 10139.
-
(1993)
Biochemistry
, vol.32
, pp. 10131-10139
-
-
Green, S.M.1
Shortle, D.2
-
8
-
-
0036708467
-
Relationship between ion pair geometries and electrostatic strengths in proteins
-
Kumar S Nussinov R (2002) Relationship between ion pair geometries and electrostatic strengths in proteins. Biophys J 83, 1595 1612.
-
(2002)
Biophys J
, vol.83
, pp. 1595-1612
-
-
Kumar, S.1
Nussinov, R.2
-
9
-
-
0037432563
-
Contribution of surface salt bridges to protein stability: Guidelines for protein engineering
-
Makhatadze GI, Loladze VV, Ermolenko DN, Chen X Thomas ST (2003) Contribution of surface salt bridges to protein stability: guidelines for protein engineering. J Mol Biol 327, 1135 1148.
-
(2003)
J Mol Biol
, vol.327
, pp. 1135-1148
-
-
Makhatadze, G.I.1
Loladze, V.V.2
Ermolenko, D.N.3
Chen, X.4
Thomas, S.T.5
-
10
-
-
4444362321
-
An electrostatic basis for the stability of thermophilic proteins
-
Dominy BN, Minoux H Brooks CL III. (2004) An electrostatic basis for the stability of thermophilic proteins. Proteins 57, 128 141.
-
(2004)
Proteins
, vol.57
, pp. 128-141
-
-
Dominy, B.N.1
Minoux, H.2
Brooks Iii., C.L.3
-
11
-
-
0037207103
-
Structural and thermodynamic studies on a salt-bridge triad in the NADP-binding domain of glutamate dehydrogenase from Thermotoga maritima: Cooperativity and electrostatic contribution to stability
-
Lebbink JH, Consalvi V, Chiaraluce R, Berndt KD Ladenstein R (2002) Structural and thermodynamic studies on a salt-bridge triad in the NADP-binding domain of glutamate dehydrogenase from Thermotoga maritima: cooperativity and electrostatic contribution to stability. Biochemistry 41, 15524 15535.
-
(2002)
Biochemistry
, vol.41
, pp. 15524-15535
-
-
Lebbink, J.H.1
Consalvi, V.2
Chiaraluce, R.3
Berndt, K.D.4
Ladenstein, R.5
-
12
-
-
0035448574
-
Ion pairs and the thermotolerance of proteins from hyperthermophiles: A 'traffic rule' for hot roads
-
Karshikoff A Ladenstein R (2001) Ion pairs and the thermotolerance of proteins from hyperthermophiles: a 'traffic rule' for hot roads. Trends Biochem Sci 26, 550 556.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 550-556
-
-
Karshikoff, A.1
Ladenstein, R.2
-
13
-
-
33645554971
-
A thermodynamic comparison of HPr proteins from extremophilic organisms
-
Razvi A Scholtz JM (2006) A thermodynamic comparison of HPr proteins from extremophilic organisms. Biochemistry 45, 4084 4092.
-
(2006)
Biochemistry
, vol.45
, pp. 4084-4092
-
-
Razvi, A.1
Scholtz, J.M.2
-
14
-
-
33745726737
-
Lessons in stability from thermophilic proteins
-
Razvi A Scholtz JM (2006) Lessons in stability from thermophilic proteins. Protein Sci 15, 1569 1578.
-
(2006)
Protein Sci
, vol.15
, pp. 1569-1578
-
-
Razvi, A.1
Scholtz, J.M.2
-
15
-
-
0034981542
-
Structural basis of thermostability in hyperthermophilic proteins, or 'there's more than one way to skin a cat'
-
Petsko GA (2001) Structural basis of thermostability in hyperthermophilic proteins, or 'there's more than one way to skin a cat'. Methods Enzymol 334, 469 478.
-
(2001)
Methods Enzymol
, vol.334
, pp. 469-478
-
-
Petsko, G.A.1
-
16
-
-
0030032461
-
The denatured state (the other half of the folding equation) and its role in protein stability
-
Shortle D (1996) The denatured state (the other half of the folding equation) and its role in protein stability. FASEB J 10, 27 34.
-
(1996)
FASEB J
, vol.10
, pp. 27-34
-
-
Shortle, D.1
-
17
-
-
33644965220
-
Design of a hyperstable protein by rational consideration of unfolded state interactions
-
Anil B, Craig-Schapiro R Raleigh DP (2006) Design of a hyperstable protein by rational consideration of unfolded state interactions. J Am Chem Soc 28, 3144 3145.
-
(2006)
J Am Chem Soc
, vol.28
, pp. 3144-3145
-
-
Anil, B.1
Craig-Schapiro, R.2
Raleigh, D.P.3
-
18
-
-
33344473937
-
The denatured state under native conditions: A non-native-like collapsed state of N-PGK
-
Reed MA, Jelinska C, Syson K, Cliff MJ, Splevins A, Alizadeh T, Hounslow AM, Staniforth RA, Clarke AR, Craven CJ et al. (2006) The denatured state under native conditions: a non-native-like collapsed state of N-PGK. J Mol Biol 357, 365 372.
-
(2006)
J Mol Biol
, vol.357
, pp. 365-372
-
-
Reed, M.A.1
Jelinska, C.2
Syson, K.3
Cliff, M.J.4
Splevins, A.5
Alizadeh, T.6
Hounslow, A.M.7
Staniforth, R.A.8
Clarke, A.R.9
Craven, C.J.10
-
19
-
-
33846498387
-
Thermodynamics of protein denatured states
-
Bowler BE (2007) Thermodynamics of protein denatured states. Mol Biosyst 3, 88 99.
-
(2007)
Mol Biosyst
, vol.3
, pp. 88-99
-
-
Bowler, B.E.1
-
20
-
-
1942521649
-
Thermodynamics and kinetics of non-native interactions in protein folding: A single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state
-
Cho JH, Sato S Raleigh DP (2004) Thermodynamics and kinetics of non-native interactions in protein folding: a single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state. J Mol Biol 338, 827 837.
-
(2004)
J Mol Biol
, vol.338
, pp. 827-837
-
-
Cho, J.H.1
Sato, S.2
Raleigh, D.P.3
-
21
-
-
0033852796
-
Charge-charge interactions influence the denatured state ensemble and contribute to protein stability
-
Pace CN, Alston RW Shaw KL (2000) Charge-charge interactions influence the denatured state ensemble and contribute to protein stability. Protein Sci 9, 1395 1398.
-
(2000)
Protein Sci
, vol.9
, pp. 1395-1398
-
-
Pace, C.N.1
Alston, R.W.2
Shaw, K.L.3
-
23
-
-
0035919635
-
Persistence of native-like topology in a denatured protein in 8 M urea
-
Shortle D Ackerman MS (2001) Persistence of native-like topology in a denatured protein in 8 M urea. Science 293, 487 489.
-
(2001)
Science
, vol.293
, pp. 487-489
-
-
Shortle, D.1
Ackerman, M.S.2
-
24
-
-
0036300690
-
Distribution of molecular size within an unfolded state ensemble using small-angle X-ray scattering and pulse field gradient NMR techniques
-
Choy WY, Mulder FA, Crowhurst KA, Muhandiram DR, Millett IS, Doniach S, Forman-Kay JD Kay LE (2002) Distribution of molecular size within an unfolded state ensemble using small-angle X-ray scattering and pulse field gradient NMR techniques. J Mol Biol 316, 101 112.
-
(2002)
J Mol Biol
, vol.316
, pp. 101-112
-
-
Choy, W.Y.1
Mulder, F.A.2
Crowhurst, K.A.3
Muhandiram, D.R.4
Millett, I.S.5
Doniach, S.6
Forman-Kay, J.D.7
Kay, L.E.8
-
25
-
-
27144532135
-
Solution structure of a protein denatured state and folding intermediate
-
Religa TL, Markson JS, Mayor U, Freund SM Fersht AR (2005) Solution structure of a protein denatured state and folding intermediate. Nature 437, 1053 1056.
-
(2005)
Nature
, vol.437
, pp. 1053-1056
-
-
Religa, T.L.1
Markson, J.S.2
Mayor, U.3
Freund, S.M.4
Fersht, A.R.5
-
26
-
-
0028936999
-
Staphylococcal nuclease: A showcase of m-value effects
-
Shortle D (1995) Staphylococcal nuclease: a showcase of m-value effects. Adv Protein Chem 46, 217 247.
-
(1995)
Adv Protein Chem
, vol.46
, pp. 217-247
-
-
Shortle, D.1
-
27
-
-
0032879755
-
A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease
-
Wrabl J Shortle D (1999) A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease. Nat Struct Biol 6, 876 883.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 876-883
-
-
Wrabl, J.1
Shortle, D.2
-
28
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers JK, Pace CN Scholtz JM (1995) Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding. Protein Sci 4, 2138 2148.
-
(1995)
Protein Sci
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
29
-
-
4444276136
-
Effect of salt on the urea-unfolded form of barstar probed by m value measurements
-
Pradeep L Udgaonkar JB (2004) Effect of salt on the urea-unfolded form of barstar probed by m value measurements. Biochemistry 43, 11393 11402.
-
(2004)
Biochemistry
, vol.43
, pp. 11393-11402
-
-
Pradeep, L.1
Udgaonkar, J.B.2
-
30
-
-
0021504608
-
The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus)
-
Carter PJ, Winter G, Wilkinson AJ Fersht AR (1984) The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus). Cell 38, 835 840.
-
(1984)
Cell
, vol.38
, pp. 835-840
-
-
Carter, P.J.1
Winter, G.2
Wilkinson, A.J.3
Fersht, A.R.4
-
32
-
-
0037096128
-
2+-binding constants of proteins and presentation of the CaLigator software
-
2+-binding constants of proteins and presentation of the CaLigator software. Anal Biochem 305, 195 205.
-
(2002)
Anal Biochem
, vol.305
, pp. 195-205
-
-
Andre, I.1
Linse, S.2
-
33
-
-
0032468160
-
The magnitude of changes in guanidine-HCl unfolding m-values in the protein, iso-1-cytochrome c, depends upon the substructure containing the mutation
-
Hammack B, Attfield K, Clayton D, Dec E, Dong A, Sarisky C Bowler BE (1998) The magnitude of changes in guanidine-HCl unfolding m-values in the protein, iso-1-cytochrome c, depends upon the substructure containing the mutation. Protein Sci 7, 1789 1795.
-
(1998)
Protein Sci
, vol.7
, pp. 1789-1795
-
-
Hammack, B.1
Attfield, K.2
Clayton, D.3
Dec, E.4
Dong, A.5
Sarisky, C.6
Bowler, B.E.7
-
34
-
-
0035979801
-
Denatured state thermodynamics: Residual structure, chain stiffness and scaling factors
-
Hammack BN, Smith CR Bowler BE (2001) Denatured state thermodynamics: residual structure, chain stiffness and scaling factors. J Mol Biol 311, 1091 1104.
-
(2001)
J Mol Biol
, vol.311
, pp. 1091-1104
-
-
Hammack, B.N.1
Smith, C.R.2
Bowler, B.E.3
-
35
-
-
0034718450
-
A change in the apparent m value reveals a populated intermediate under equilibrium conditions in Escherichia coli ribonuclease HI
-
Spudich G Marqusee S (2000) A change in the apparent m value reveals a populated intermediate under equilibrium conditions in Escherichia coli ribonuclease HI. Biochemistry 39, 11677 11683.
-
(2000)
Biochemistry
, vol.39
, pp. 11677-11683
-
-
Spudich, G.1
Marqusee, S.2
-
36
-
-
0025082684
-
Additivity of mutational effects in proteins
-
Wells JA (1990) Additivity of mutational effects in proteins. Biochemistry 29, 8509 8517.
-
(1990)
Biochemistry
, vol.29
, pp. 8509-8517
-
-
Wells, J.A.1
-
37
-
-
0028965496
-
Long-range, small magnitude nonadditivity of mutational effects in proteins
-
LiCata VJ Ackers GK (1995) Long-range, small magnitude nonadditivity of mutational effects in proteins. Biochemistry 34, 3133 3139.
-
(1995)
Biochemistry
, vol.34
, pp. 3133-3139
-
-
Licata, V.J.1
Ackers, G.K.2
-
38
-
-
33645506272
-
Cofactor effects on the protein folding reaction: Acceleration of alpha-lactalbumin refolding by metal ions
-
Bushmarina NA, Blanchet CE, Vernier G Forge V (2006) Cofactor effects on the protein folding reaction: acceleration of alpha-lactalbumin refolding by metal ions. Protein Sci 15, 659 671.
-
(2006)
Protein Sci
, vol.15
, pp. 659-671
-
-
Bushmarina, N.A.1
Blanchet, C.E.2
Vernier, G.3
Forge, V.4
-
39
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho SN, Hunt HD, Horton RM, Pullen JK Pease LR (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77, 51 59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
40
-
-
17744396452
-
Characterization of beta-glycosylhydrolases from Pyrococcus furiosus
-
Kaper T, Verhees CH, Lebbink JH, van Lieshout JF, Kluskens LD, Ward DE, Kengen SW, Beerthuyzen MM, de Vos WM van der Oost J (2001) Characterization of beta-glycosylhydrolases from Pyrococcus furiosus. Methods Enzymol 330, 329 346.
-
(2001)
Methods Enzymol
, vol.330
, pp. 329-346
-
-
Kaper, T.1
Verhees, C.H.2
Lebbink, J.H.3
Van Lieshout, J.F.4
Kluskens, L.D.5
Ward, D.E.6
Kengen, S.W.7
Beerthuyzen, M.M.8
De Vos, W.M.9
Van Der Oost, J.10
-
41
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill SC von Hippel PH (1989) Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182, 319 326.
-
(1989)
Anal Biochem
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
42
-
-
0026096545
-
Study of the 'molten globule' intermediate state in protein folding by a hydrophobic fluorescent probe
-
Semisotnov GV, Rodionova NA, Razgulyaev OI, Uversky VN, Gripas' AF Gilmanshin RI (1991) Study of the 'molten globule' intermediate state in protein folding by a hydrophobic fluorescent probe. Biopolymers 31, 119 128.
-
(1991)
Biopolymers
, vol.31
, pp. 119-128
-
-
Semisotnov, G.V.1
Rodionova, N.A.2
Razgulyaev, O.I.3
Uversky, V.N.4
Gripas, A.F.5
Gilmanshin, R.I.6
-
43
-
-
0015230409
-
Solute perturbation of protein fluorescence. the quenching of the tryptophyl fluorescence of model compounds and of lysozyme by iodide ion
-
Lehrer SS (1971) Solute perturbation of protein fluorescence. The quenching of the tryptophyl fluorescence of model compounds and of lysozyme by iodide ion. Biochemistry 10, 254 3263.
-
(1971)
Biochemistry
, vol.10
, pp. 254-3263
-
-
Lehrer, S.S.1
-
44
-
-
0027378450
-
Resolution of the fluorescence equilibrium unfolding profile of trp aporepressor using single tryptophan mutants
-
Royer CA, Mann CJ Matthews CR (1993) Resolution of the fluorescence equilibrium unfolding profile of trp aporepressor using single tryptophan mutants. Protein Sci 2, 1844 1852.
-
(1993)
Protein Sci
, vol.2
, pp. 1844-1852
-
-
Royer, C.A.1
Mann, C.J.2
Matthews, C.R.3
-
45
-
-
0034622508
-
Multistate equilibrium unfolding of Escherichia coli dihydrofolate reductase: Thermodynamic and spectroscopic description of the native, intermediate, and unfolded ensembles
-
Ionescu RM, Smith VF, O'Neill JC Jr. Matthews CR (2000) Multistate equilibrium unfolding of Escherichia coli dihydrofolate reductase: thermodynamic and spectroscopic description of the native, intermediate, and unfolded ensembles. Biochemistry 39, 9540 9550.
-
(2000)
Biochemistry
, vol.39
, pp. 9540-9550
-
-
Ionescu, R.M.1
Smith, V.F.2
O'Neill Jr., J.C.3
Matthews, C.R.4
-
46
-
-
0023697408
-
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants
-
Santoro MM Bolen DW (1988) Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants. Biochemistry 27, 8063 8068.
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
-
47
-
-
0025126043
-
Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins
-
Horovitz A Fersht AR (1990) Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins. J Mol Biol 214, 613 617.
-
(1990)
J Mol Biol
, vol.214
, pp. 613-617
-
-
Horovitz, A.1
Fersht, A.R.2
-
48
-
-
0019333905
-
New calcium indicators and buffers with high selectivity against magnesium and protons: Design, synthesis, and properties of prototype structures
-
Tsien RY (1980) New calcium indicators and buffers with high selectivity against magnesium and protons: design, synthesis, and properties of prototype structures. Biochemistry 19, 2396 2404.
-
(1980)
Biochemistry
, vol.19
, pp. 2396-2404
-
-
Tsien, R.Y.1
-
49
-
-
1642317185
-
Some precautions in using chelators to buffer metals in biological solutions
-
Patton C, Thompson S Epel D (2004) Some precautions in using chelators to buffer metals in biological solutions. Cell Calcium 35, 427 431.
-
(2004)
Cell Calcium
, vol.35
, pp. 427-431
-
-
Patton, C.1
Thompson, S.2
Epel, D.3
|