메뉴 건너뛰기




Volumn 1, Issue 1, 2007, Pages 67-85

Semantic analysis of biological imaging data: challenges and opportunities

Author keywords

Biological imaging; semantic analysis; spatio temporal modeling

Indexed keywords

DATA MINING; HIGH SPEED CAMERAS; IMAGE ENHANCEMENT;

EID: 36248961089     PISSN: 1793351X     EISSN: 17937108     Source Type: Journal    
DOI: 10.1142/S1793351X07000032     Document Type: Article
Times cited : (8)

References (45)
  • 1
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • H. Kitano, Systems biology: A brief overview, Science 295(5560) (2002) 1662-1664.
    • (2002) Science , vol.295 , Issue.5560 , pp. 1662-1664
    • Kitano, H.1
  • 3
    • 0037418906 scopus 로고    scopus 로고
    • Light microscopy techniques for live cell imaging
    • D. J. Stephens and V. J. Allan, Light microscopy techniques for live cell imaging, Science 300(5616) (2003) 82-86.
    • (2003) Science , vol.300 , Issue.5616 , pp. 82-86
    • Stephens, D.J.1    Allan, V.J.2
  • 4
    • 85032752151 scopus 로고    scopus 로고
    • Informatics challenges of high-throughput microscopy
    • X. Zhou and S. T. C. Wong, Informatics challenges of high-throughput microscopy, IEEE Signal Processing Magazine 23(3) (2006) 63-72.
    • (2006) IEEE Signal Processing Magazine , vol.23 , Issue.3 , pp. 63-72
    • Zhou, X.1    Wong, S.T.C.2
  • 5
    • 0001341562 scopus 로고    scopus 로고
    • High-content screening: A new approach to easing key bottlenecks in the drug discovery process
    • K. A. Giuliano, High-content screening: A new approach to easing key bottlenecks in the drug discovery process, Journal of Biomolecular Screening 2(4) (1997) 249-259.
    • (1997) Journal of Biomolecular Screening , vol.2 , Issue.4 , pp. 249-259
    • Giuliano, K.A.1
  • 6
    • 10744225719 scopus 로고    scopus 로고
    • Automatic analysis of the content of cell biological videos and database organization of their metadata descriptors
    • A. Rodriguez, N. Guil, D. M. Shotton and O. Trelles, Automatic analysis of the content of cell biological videos and database organization of their metadata descriptors, IEEE Trans. on Multimedia 6(1) (2004) 119-128.
    • (2004) IEEE Trans. on Multimedia , vol.6 , Issue.1 , pp. 119-128
    • Rodriguez, A.1    Guil, N.2    Shotton, D.M.3    Trelles, O.4
  • 7
    • 0037418911 scopus 로고    scopus 로고
    • Informatics and quantitative analysis in biological imaging
    • J. R. Swedlow, I. Goldberg, E. Brauner and P. K. Sorger, Informatics and quantitative analysis in biological imaging, Science 300(5616) (2003) 100-102.
    • (2003) Science , vol.300 , Issue.5616 , pp. 100-102
    • Swedlow, J.R.1    Goldberg, I.2    Brauner, E.3    Sorger, P.K.4
  • 10
    • 0035167454 scopus 로고    scopus 로고
    • A workingperson's guide to deconvolution in light microscopy
    • W. Wallace, L. H. Schaefer and J. R. Swedlow, A workingperson's guide to deconvolution in light microscopy, Biotechniques 31 (2001) 1076-1097.
    • (2001) Biotechniques , vol.31 , pp. 1076-1097
    • Wallace, W.1    Schaefer, L.H.2    Swedlow, J.R.3
  • 11
    • 0033384861 scopus 로고    scopus 로고
    • Three-dimensional imaging by deconvolution microscopy
    • J. G. McNally, T. Karpova, J. Cooper and J. A. Conchello, Three-dimensional imaging by deconvolution microscopy, Methods 19 (1999) 373-385.
    • (1999) Methods , vol.19 , pp. 373-385
    • McNally, J.G.1    Karpova, T.2    Cooper, J.3    Conchello, J.A.4
  • 12
  • 13
    • 85032751072 scopus 로고    scopus 로고
    • On the digital trail of mobile cells
    • C. Zimmer et al., On the digital trail of mobile cells, IEEE Signal Processing Magazine 23(3) (2006) 54-62.
    • (2006) IEEE Signal Processing Magazine , vol.23 , Issue.3 , pp. 54-62
    • Zimmer, C.1
  • 14
    • 0345565793 scopus 로고    scopus 로고
    • Empirical comparison of cell segmentation algorithms using an annotated dataset
    • P. Bamford, Empirical comparison of cell segmentation algorithms using an annotated dataset, in Proc. Int. Conf. on Image Processing, 2003, pp. II-1073-1076.
    • (2003) Proc. Int. Conf. on Image Processing , pp. II1073-II1076
    • Bamford, P.1
  • 15
    • 0033906873 scopus 로고    scopus 로고
    • Applying deformable templates for cell image segmentation
    • A. Garrido, N. Perez de la Blanca, Applying deformable templates for cell image segmentation, Pattern Recognition 33 (2000) 821-832.
    • (2000) Pattern Recognition , vol.33 , pp. 821-832
    • Garrido, A.1    De La Perez, B.N.2
  • 18
    • 3042547731 scopus 로고    scopus 로고
    • Combining intensity edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
    • C. Wahlby, I.-M. Sintorn, F. Erlandsson, G. Borgefors and E. Bengtsson, Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections, Journal of Microscopy 215 (2004) 67-76.
    • (2004) Journal of Microscopy , vol.215 , pp. 67-76
    • Wahlby, C.1    Sintorn, I.-M.2    Erlandsson, F.3    Borgefors, G.4    Bengtsson, E.5
  • 22
    • 0034817343 scopus 로고    scopus 로고
    • Quantitative comparison of algorithms for tracking single fluorescent particles
    • M. K. Cheezum, W. F. Walker and W. H. Guilford, Quantitative comparison of algorithms for tracking single fluorescent particles, Biophysical Journal 81(4) (2001) 2378-2388.
    • (2001) Biophysical Journal , vol.81 , Issue.4 , pp. 2378-2388
    • Cheezum, M.K.1    Walker, W.F.2    Guilford, W.H.3
  • 23
    • 0036826342 scopus 로고    scopus 로고
    • Segmentation and tracking of migrating cells in video microscopy with parametric active contours: A tool for cell-based drug testing
    • C. Zimmer, E. Labruyere, V. Meas-Yedid, N. Guillen and J. Olivo-Marin, Segmentation and tracking of migrating cells in video microscopy with parametric active contours: A tool for cell-based drug testing, IEEE Trans. on Medical Imaging 21(10) (2002) 1212-1221.
    • (2002) IEEE Trans. on Medical Imaging , vol.21 , Issue.10 , pp. 1212-1221
    • Zimmer, C.1    Labruyere, E.2    Meas-Yedid, V.3    Guillen, N.4    Olivo-Marin, J.5
  • 25
    • 0036826171 scopus 로고    scopus 로고
    • Tracking leukocytes in vivo with shape and size constrained active contours
    • N. Ray, S. Acton and K. Ley, Tracking leukocytes in vivo with shape and size constrained active contours, IEEE Trans. on Medical Imaging 21(10) (2002) 1222-1235.
    • (2002) IEEE Trans. on Medical Imaging , vol.21 , Issue.10 , pp. 1222-1235
    • Ray, N.1    Acton, S.2    Ley, K.3
  • 26
    • 0036139314 scopus 로고    scopus 로고
    • A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells
    • M. V. Boland and R. F. Murphy, A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells, Bioinformatics 17(12) (2001) 1213-1223.
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1213-1223
    • Boland, M.V.1    Murphy, R.F.2
  • 33
    • 33645326241 scopus 로고    scopus 로고
    • Automated segmentation classification and tracking of cancer cell nuclei in time-lapse microscopy
    • X. Chen, X. Zhou and S. T. C. Wong, Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy, IEEE Trans. on Biomedical Engineering 53(4) (2006) 762-766.
    • (2006) IEEE Trans. on Biomedical Engineering , vol.53 , Issue.4 , pp. 762-766
    • Chen, X.1    Zhou, X.2    Wong, S.T.C.3
  • 34
    • 33750952101 scopus 로고    scopus 로고
    • Application of temporal texture features to automated analysis of protein subcellular locations in time series fluorescence microscope images
    • Y. Hu, J. Carmona and R. F. Murphy, Application of temporal texture features to automated analysis of protein subcellular locations in time series fluorescence microscope images, in Proc. of the 2006 IEEE International Symposium on Biomedical Imaging (ISBI 2006), pp. 1028-1031.
    • (2006) Proc. of the 2006 IEEE International Symposium on Biomedical Imaging (ISBI , pp. 1028-1031
    • Hu, Y.1    Carmona, J.2    Murphy, R.F.3
  • 37
    • 84948655958 scopus 로고    scopus 로고
    • Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database
    • K. Huang, J. Lin, J. A. Gajnak and R. F. Murphy, Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database, in Proc. 2002 IEEE International Symposium on Biomedical Imaging (ISBI 2002), pp. 325-328.
    • (2002) Proc. 2002 IEEE International Symposium on Biomedical Imaging (ISBI , pp. 325-328
    • Huang, K.1    Lin, J.2    Gajnak, J.A.3    Murphy, R.F.4
  • 38
    • 0037401015 scopus 로고    scopus 로고
    • Detection of bacterial pathogens in environmental samples using DNA microarrays
    • D. R. Call, M. K. Borucki and F. J. Loge, Detection of bacterial pathogens in environmental samples using DNA microarrays, Journal of Microbiological Methods 53(2) (2003) 235-243.
    • (2003) Journal of Microbiological Methods , vol.53 , Issue.2 , pp. 235-243
    • Call, D.R.1    Borucki, M.K.2    Loge, F.J.3
  • 39
    • 33749862379 scopus 로고    scopus 로고
    • Putting proteins on the map
    • R. Murphy, Putting proteins on the map, Nature Biotechnology 24 (2006) 1223-1224.
    • (2006) Nature Biotechnology , vol.24 , pp. 1223-1224
    • Murphy, R.1
  • 40
    • 0242410975 scopus 로고    scopus 로고
    • Location proteomics-Building subcellular location trees from high resolution 3D fluorescence microscope image of randomly-tagged proteins
    • X. Chen, M. Velliste, S. Weinstein, J. W. Jarvik and R. F. Murphy, Location proteomics-Building subcellular location trees from high resolution 3D fluorescence microscope image of randomly-tagged proteins, in Proceedings of SPIE 4962 (2003) 298-306.
    • (2003) Proceedings of SPIE , vol.4962 , pp. 298-306
    • Chen, X.1    Velliste, M.2    Weinstein, S.3    Jarvik, J.W.4    Murphy, R.F.5
  • 42
    • 85032751088 scopus 로고    scopus 로고
    • High content cellular imaging for drug development
    • X. Zhou and S. T. C. Wong, High content cellular imaging for drug development, IEEE Signal Processing Magazine 23(2) (2006) 170-174.
    • (2006) IEEE Signal Processing Magazine , vol.23 , Issue.2 , pp. 170-174
    • Zhou, X.1    Wong, S.T.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.