Altered microRNA expression in human heart disease

Physiological Genomics

Volumn 31, Issue 3, 2007, Pages 367-373

  Ikeda, Sadakatsu ^a,b   Kong, Sek Won ^a,b   Lu, Jun ^b,c   Bisping, Egbert ^d   Zhang, Hao ^b,c   Allen, Paul D ^e   Golub, Todd R ^a,b,c,f   Pieske, Burkert ^d   Pu, William T ^a,b  

^a BOSTON CHILDREN S HOSPITAL   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^d UNIVERSITY OF GÖTTINGEN   (Germany)

^e BRIGHAM AND WOMEN S HOSPITAL   (United States)

^f HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

Expression profiling; Gene expression; Heart failure

Indexed keywords

MICRORNA;

ANALYSIS OF VARIANCE; AORTA STENOSIS; ARTICLE; COMPARATIVE STUDY; CONGESTIVE CARDIOMYOPATHY; CONTROLLED STUDY; FEMALE; GENE CLUSTER; GENE EXPRESSION; HEART DISEASE; HEART LEFT VENTRICLE; HUMAN; HUMAN TISSUE; ISCHEMIC HEART DISEASE; MALE; PATHOGENESIS; POST HOC ANALYSIS; PRIORITY JOURNAL;

AGED; ANALYSIS OF VARIANCE; CASE-CONTROL STUDIES; FEMALE; HEART DISEASES; HUMANS; MALE; MICRORNAS; MIDDLE AGED;

EID: 36248948593     PISSN: 10948341     EISSN: 15312267     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00144.2007     Document Type: Article

References (24)

1. Ambros V. The functions of animal microRNAs. Nature 431: 350-355, 2004.
2. Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, function. Cell 116: 281-297, 2004.
3. Baskerville S, Bartel DP. Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11: 241-247, 2005.
4. Care A, Catalucci D, Felicetti F, Bonci D, Addario A, Gallo P, Bang ML, Segnalini P, Gu Y, Dalton ND, Elia L, Latronico MV, Hoydal M, Autore C, Russo MA, Dorn GW 2nd, Ellingsen O, Ruiz-Lozano P, Peterson KL, Croce CM, Peschle C, Condorelli G. MicroRNA-133 controls cardiac hypertrophy. Nat Med 13: 613-618, 2007.
5. Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, Hammond SM, Conlon FL, Wang DZ. The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 38: 228-233, 2006.
6. Cortes C, Vapnik V. Support-vector networks. Machine Learning 20: 273-297, 1995.
7. Di Leva G, Calin GA, Croce CM. MicroRNAs: Fundamental facts and involvement in human diseases. Birth Defects Res C Embryo Today 78: 180-189, 2006.
8. Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537, 1999.
9. Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res 32: D109-11, 2004.
10. Kittleson MM, Ye SQ, Irizarry RA, Minhas KM, Edness G, Conte JV, Parmigiani G, Miller LW, Chen Y, Hall JL, Garcia JG, Hare JM. Identification of a gene expression profile that differentiates between ischemic and nonischemic cardiomyopathy. Circulation 110: 3444-3451, 2004.
11. Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T. Identification of tissue-specific microRNAs from mouse. Curr Biol 12: 735-739, 2002.
12. Liew CC, Dzau VJ. Molecular genetics and genomics of heart failure. Nat Rev Genet 5: 811-825, 2004.
13. Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, Peck D, Sweet-Cordero A, Ebert BL, Mak RH, Ferrando AA, Downing JR, Jacks T, Horvitz HR, Golub TR. MicroRNA expression profiles classify human cancers. Nature 435: 834-838, 2005.
14. McKinsey TA, Olson EN. Toward transcriptional therapies for the failing heart: chemical screens to modulate genes. J Clin Invest 115: 538-546, 2005.
15. Sayed D, Hong C, Chen IY, Lypowy J, Abdellatif M. MicroRNAs Play an Essential Role in the Development of Cardiac Hypertrophy. Circ Res 2007.
16. Thum T, Galuppo P, Wolf C, Fiedler J, Kneitz S, van Laake LW, Doevendans PA, Mummery CL, Borlak J, Haverich A, Gross C, Engelhardt S, Ertl G, Bauersachs J. MicroRNAs in the human heart: a clue to fetal gene reprogramming in heart failure. Circulation 116: 258-267, 2007.
17. Tibshirani R. A simple method for assessing sample sizes in microarray experiments. BMC Bioinformatics 7: 106, 2006.
18. Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98: 5116-5121, 2001.
19. Van Rooij E, Sutherland LB, Liu N, Williams AH, McAnally J, Gerard RD, Richardson JA, Olson EN. A signature pattern of stress-responsive microRNAs that can evoke cardiac hypertrophy and heart failure. Proc Natl Acad Sci U S A 2006.
20. Van Rooij E, Sutherland LB, Qi X, Richardson JA, Hill J, Olson EN. Control of stress-dependent cardiac growth and gene expression by a microRNA. Science 316: 575-579, 2007.
21. Venables WN, Ripley BD. Modern Applied Statistics with S. Springer, 2002.
22. Yang B, Lin H, Xiao J, Lu Y, Luo X, Li B, Zhang Y, Xu C, Bai Y, Wang H, Chen G, Wang Z. The muscle-specific microRNA miR-1 regulates cardiac arrhythmogenic potential by targeting GJA1 and KCNJ2. Nat Med 13: 486-491, 2007.
23. Zhao Y, Ransom JF, Li A, Vedantham V, von Drehle M, Muth AN, Tsuchihashi T, McManus MT, Schwartz RJ, Srivastava D. Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1-2. Cell 129: 303-317, 2007.
24. Zhao Y, Samal E, Srivastava D. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 436: 214-220, 2005.