Regional differences in the genetic variability of Finno-Ugric speaking Komi populations

American Journal of Human Biology

Volumn 19, Issue 6, 2007, Pages 741-750

  Khrunin, Andrey ^a   Verbenko, Dmitry ^a   Nikitina, Kseniya ^a   Limborska, Svetlana ^a  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

APOLIPOPROTEIN B; PROTEIN P53;

3' UNTRANSLATED REGION; ARTICLE; ASIAN; CLIMATE; CODON; CONTROLLED STUDY; DNA POLYMORPHISM; ETHNIC DIFFERENCE; ETHOLOGY; GENE DUPLICATION; GENE IDENTIFICATION; GENETIC ASSOCIATION; GENETIC DIFFERENCE; GENETIC VARIABILITY; GEOGRAPHIC ORIGIN; HUMAN; INTRON; NUTRITION; POPULATION RESEARCH; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RUSSIAN FEDERATION; SOCIAL ADAPTATION; SOCIAL INTERACTION;

ASIAN CONTINENTAL ANCESTRY GROUP; BASE SEQUENCE; ETHNIC GROUPS; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENETICS, POPULATION; GEOGRAPHY; HUMANS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; RUSSIA;

EID: 36048967456     PISSN: 10420533     EISSN: 15206300     Source Type: Journal    
DOI: 10.1002/ajhb.20620     Document Type: Article

References (39)

1. Bertranpetit J, Calafell F, Comas D, Gonzalez-Neira A, Navarro A. 2003. Structure of linkage disequilibrium in humans: genome factors and population stratification. Cold Spring Harbor Symp Quant Biol 68:79-88.
2. Biros E, Kalina I, Kohut A, Stubna J, Salagovic J. 2001. Germ line polymorphisms of the tumor suppressor gene p53 and lung cancer. Lung Cancer 31:157-162.
3. Du G, Xue H, Wu G, Zeng W, Chen B. 2006. Structure analysis of apolipoprotein B 3′ variable number of tandem repeats. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 23:335-338.
4. Gaspar PA, Hutz MH, Salzano FM, Hill K, Hurtado AM, Petzl-Erler ML, Tsuneto LT, Weimer TA. 2002. Polymorphisms of CYP1a1, CYP2e1, GSTM1, GSTT1, and TP53 genes in Amerindians. Am J Phys Anthropol 119:249-256.
5. Gemignani F, Moreno V, Landi S, Moullan N, Chabrier A, Gutierrez-Enriquez S, Hall J, Guino E, Peinado MA, Capella G, Canzian FA. 2004. TP53 polymorphism is associated with increased risk of colorectal cancer and with reduced levels of TP53 mRNA. Oncogene 23:1954-1956.
6. Gonzalez-Neira A, Ke X, Lao O, Calafell F, Navarro A, Comas D, Cann H, Bumpstead S, Ghori J, Hunt S, Deloukas P, Dunham I, Cardon LR, Bertranpetit J. 2006. The portability of tagSNPs across populations: a worldwide survey. Genome Res 16:323-330.
7. Herrera RJ, Adrien LR, Ruiz LM, Sanabria NY, Duncan G. 2004. D1S80 single-locus discrimination among African populations. Hum Biol 76:87-108.
8. Kasai K, Nakamura Y, White R. 1990. Amplification of a variable number of tandem repeat (VNTR) locus (pMCT118) by the polymerase chain reaction (PCR) and its application to forensic science. J Forensic Sci 35:1196-1200.
9. Khrunin AV, Tarskaia LA, Spitsyn VA, Lylova OI, Bebyakova NA, Mikulich AI, Limborska SA. 2005. p53 Polyo morphisms in Russia and Belarus: correlation of 2-1-1 haplotype frequency with longitude. Mol Genet Genomics 272:666-672.
10. Khusnutdinova EK, Viktorova TV, Fatkhlislamova RI, Galeeva AR. 1999. Evaluation of the relative contribution of Caucasoid and Mongoloid components in the formation of ethnic groups of the Volga-Ural region according to data of DNA polymorphism. Genetika 35:1132-1137.
11. Kidd KK, Kidd JR. 1996. A nuclear perspective on human evolution. In: Boyce AJ, Mascie-Taylor CGN, editors. Molecular biology and human diversity. Cambridge: Cambridge University Press. p 242-264.
12. Kidd KK, Morar B, Castiglione CM, Zhao H, Pakstis AJ, Speed WC, Bonne-Tamir B, Lu RB, Goldman D, Lee C, Nam YS, Grandy DK, Jenkins T, Kidd JR. 1998. A global survey of haplotype frequencies and linkage disequilibrium at the DRD2 locus. Hum Genet 103:211-227.
13. Kravchenko SA, Malyarchuk SG, Livshits LA. 1996. A population genetics study of the allelic polymorphism in the hypervariable region of the apolipoprotein B gene in the population of different regions of Ukraine. Tsitol Genet 30:35-41.
14. Lahermo P, Sajantila A, Sistonen P, Lukka M, Aula P, Peltonen L, Savontaus ML. 1996. The genetic relationship between the Finns and the Finnish Saami (Lapps): analysis of nuclear DNA and mtDNA. Am J Hum Genet 58:1309-1322.
15. Lewis PO, Zaykin D. 2001. Genetic data analysis: computer program for the analysis of allelic data. Version 1.0 (d16c). (Free program distributed by the authors over the internet from http://lewis.eeb.uconn.edu/lewishome/sofstware.html).
16. Limborska SA, Khusnutdinova EK, Balanovskaya EV. 2002. Etnogenomika I Genogeografiya Narodov Vostochnoi Evropy (Etno genomics and gene geography of Eastern European ethnic groups). Moscow: Nauka. 338 p.
17. Liu N, Sawyer SL, Mukherjee N, Pakstis AJ, Kidd JR, Kidd KK, Brookes AJ, Zhao H. 2004. Haplotype block structures show significant variation among populations. Genet Epidemiol 27:385-400.
18. Ludwig EH, Friedl W, McCarthy BJ. 1989. High resolution analysis of a hypervariable region in the human apolipoprotein B gene. Am J Hum Genet 45:458-464.
19. Mastana S, Lee D, Singh PP, Singh M. 2003. Molecular genetic variation in the East Midlands, England: analysis of VNTR, STR and Alu insertion/ deletion polymorphisms. Ann Hum Biol. 30:538-50.
20. Milligan BG. 1998. Total DNA isolation. In: Hoelzel AR, editor. Molecular genetic analysis of populations. London: Oxford University Press. p 29-60.
21. Nakamura Y, Carlson M, Krapcho K, White R. 1988. Isolation and mapping of a polymorphic DNA sequence (pMCT118) on chromosome 1p [D1S80]. Nucleic Acids Res 16:9364.
22. Nei M. 1972. Genetic distance between populations. Am Nat 106:283-292.
23. Renges HH, Peacock R, Dunning AM, Talmud P, Humphries SE. 1992. Genetic relationship between the 3′ VNTR and diallelic apolipoprotein B gene polymorphism: haplotype analysis in individuals of European and South Asian Origin. Ann Hum Genet 56:11-33.
24. Sajantila A, Budowle B, Strom M, Johnsson V, Lukka M, Peltonen L, Ehnholm C. 1992. PCR amplification of alleles at the DIS80 locus: comparison of a Finnish and a North American caucasian population sample, and forensic casework evaluation. Am J Hum Genet 50:816-825.
25. Savel'eva EA (Editor). 2001. Atlas of the Komi Republic, Moscow: Dizain. Moscow: Inter'er Kartographiya. 552 p.
26. Shneider luV, Petrishchev VN, Lebedeva IA. 1990. Biochemical gene markers in Komi populations. Genetika 26:1102-1109.
27. Sjalander A, Birgander R, Kivela A, Beckman G. 1995. p53 polymorphisms and haplotypes in different ethnic groups. Hum Hered 45:144-149.
28. Sjalander A, Birgander R, Saha N, Beckman L, Beckman G. 1996. p53 polymorphisms and haplotypes show distinct differences between major ethnic groups. Hum Hered 46:41-48.
29. Sun Y, Keshava C, Sharp DS, Weston A, McCanlies EC. 1999. DNA sequence variants of p53: Cancer and aging. Am J Hum Genet 65:1779-1782.
30. Takezaki N, Nei M. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144:389-399.
31. Tambets K, Rootsi S, Kivisild T, Help H, Serk P, Loogvali EL, Tolk HV, Reidla M, Metspalu E, Pliss L, Balanovsky O, Pshenichnov A, Balanovska E, Gubina M, Zhadanov S, Osipova L, Damba L, Voevoda M, Kutuev I, Bermisheva M, Khusnutdinova E, Gusar V, Grechanina E, Parik J, Pennarun E, Richard C, Chaventre A, Moisan JP, Barac L, Pericic M, Rudan P, Terzic, Mikerezi I, Krumina A, Baumanis V, Koziel S, Rickards O, De Stefano GF, Anagnou N, Pappa KI, Michalodimitrakis E, Ferak V, Furedi S, Komel R, Beckman L, Villems R. 2004. The western and eastern roots of the Saami-the story of genetic "outliers" told by mitochondrial DNA and Y chromosomes. Am J Hum Genet. 74:661-82.
32. Tikhomirova EV. 1990. Immunogenetical markers in populations of Komi. Genetika 26:1660-1666.
33. Verbenko DA, Kekeeva TV, Pogoda TV, Khusnutdinova EK, Mikulich AI, Kravchenko SA, Livshits LA, Bebyakova NA, Limborska SA. 2003a. Allele frequencies for D1S80 (pMCT118) locus in some East European populations. J Forensic Sci 48:206-207.
34. Verbenko DA, Knjazev AN, Mikulich AI, Khusnutdinova EK, Bebyakova NA, Limborska SA. 2005. Variability of the 3′APOB minisatellite locus in eastern Slavonic populations. Hum Hered 60:10-18.
35. Verbenko DA, Pocheshkhova EA, Balanovskaya EV, Marshanija EZ, Kvitzinija PK, Limborska SA. 2004. Polymorphisms of D1S80 and 3′ApoB minisatellite loci in Northern Caucasus populations. J Forensic Sci 50: 180-183.
36. Verbenko DA, Pogoda TV, Spitsyn VA, Mikulich AI, Bets LV, Bebyakova NA, Ivanov VP, Abolmasov NN, Pocheshkhova EA, Balanovskaya EV, Tarskaya LA, Sorensen MV, Limborska SA. 2003b. Apolipoprotein B 3′-VNTR polymorphism in Eastern European populations. Eur J Hum Genet 11:444-451.
37. Verbenko DA, Slominsky PA, Spitsyn VA, Bebyakova NA, Khusnutdinova EK, Mikulich AI, Tarskaya LA, Sorensen MV, Ivanov VP, Bets LV, Limborska SA. 2006. Polymorphisms at locus D1S80 and other hypervariable regions in the analysis of Eastern European ethnic group relationships. Ann Hum Biol 33:570-584.
38. Wang-Gohrke S, Becher H, Kreienberg R, Runnebaum IB, Chang-Claude J. 2002. Intron 3 16 bp duplication polymorphism of p53 is associated with an increased risk for breast cancer by the age of 50 years. Pharmacogenetics 12:269-272.
39. Wu X, Zhao H, Amos CI, Shete S, Makan N, Hong WK, Kadlubar FF, Spitz MR. 2002. p53 genotypes and haplotypes associated with lung cancer susceptibility and ethnicity. J Natl Cancer Inst 94:681-690.