D1S80 single-locus discrimination among African populations

Human Biology

Volumn 76, Issue 1, 2004, Pages 87-108

  Herrera, Rene J ^a   Adrien, Leslie R ^a   Ruiz, Luis M ^a   Sanabria, Nahir Y ^a   Duncan, George ^b  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b Broward County Sheriff's Office   (United States)

Author keywords

African populations; AmpliFLPs; Benin; Cameroon; D1S80; Egypt; Kenya; PCR; Phylogenetic analysis; Population genetics; Rwanda; Variable number of tandem repeats (VNTR)

Indexed keywords

AFRICA; ARTICLE; BENIN; CAMEROON; EGYPT; FORENSIC IDENTIFICATION; GENE FREQUENCY; GENETIC ASSOCIATION; HETEROZYGOSITY; HUMAN; KENYA; NEGRO; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; POLYMORPHIC LOCUS; PRINCIPAL COMPONENT ANALYSIS; RWANDA; STATISTICAL ANALYSIS; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 2942748151     PISSN: 00187143     EISSN: None     Source Type: Journal    
DOI: 10.1353/hub.2004.0022     Document Type: Article

References (52)

1. Alkhayat, A., F. Alshamali, and B. Budowle. 1996. Population data on the PCR-based loci LDLR, GYPA, HBGG, D7S8, Gc, HLA-DQA1, and D1S80 from Arabs from Dubai. Forensic Sci. Int. 81:29-34.
2. Allen, R.C., B. Budowle, and G. Graves. 1989. Polymerase chain reaction amplification products separated on rehydratable polyacrylamide gels and stained with silver. Biotechniques 7:736-744.
3. Antunez-de-Mayolo, G., A. Antunez-de-Mayolo, P. Antunez-de-Mayolo et al. 2002. Phylogenetics of worldwide human populations as determined by polymorphic Alu insertions. Electrophoresis 23:3346-3356.
4. Applied Biosystems. 2001. AmpliFLP D1S80 PCR Amplification Kit Product Detail. Foster City, CA: Applied Biosystems.
5. Araújo Da Silva, W., Jr., M.C. Bortolini, D. Meyer et al. 1999. Genetic diversity of two African and sixteen South American populations determined on the basis of six hypervariable loci. Am. J. Phys. Anthropol. 109:425-437.
6. Arnaiz-Villena, A., E. Gomez-Casado, and J. Martinez-Laso. 2002. Population genetic relationships between Mediterranean populations determined by HLA allele distribution and a historic perspective. Tissue Antigens 60(2):111-121.
7. Buchanan, A.V., G.M. Risch, M. Robichaux et al. 2000. Long DOP-PCR of rare archival anthropological samples. Hum. Biol. 72:911-925.
8. Budowle, B., B.W. Koons, and J.D. Errera. 1996. Multiplex amplification and typing procedure for the loci D1S80 and amelogenin. J. Forensic Sci. 41:660-663.
9. Budowle, B., J.B. Smerick, K.M. Keys et al. 1997. United States population data on the multiplex short tandem repeat loci-HUMTH01, TPOX, and CSF1PO-and the variable number tandem repeat locus D1S80. J. Forensic Sci. 42:846-849.
10. Cakir, A.H., L. Acik, and T. Kesici. 2001. Distribution of amplified fragment length polymorphism D1S80 alleles in Turkish population. J. Forensic Sci. 46:1002.
11. Cariolou, M.A., P. Maroli, M. Christophorou et al. 1998. Greek Cypriot allele and genotype frequencies for amplitype PM-DQA1 and D1S80 loci. J. Forensic Sci. 43:661-664.
12. Carmody, G. 1990. G-Test. Ottawa: Department of Biology, Carleton University (unpublished program distributed by the author).
13. Cavalli-Sforza, L.L., P. Menozzi, and A. Piazza. 1994. The History and Geography of Human Genes. Princeton, NJ: Princeton University Press, 73-83, 162-166.
14. Clancy-Smith, J. 1997. Berber history. J. Afr. Hist. 38(3):497-534.
15. Committee on DNA Forensic Science. 1996. The Evaluation of Forensic DNA Evidence. Washington, DC: National Academy Press, 5.
16. Duncan, G. 1996. Microvariation at the human D1S80 locus. Miami: Ph.D. dissertation, Florida International University.
17. Duncan, G., E. Thomas, J.C. Gallo et al. 1996. Human phylogenetic relationships according to the D1S80 locus. Genetica 98:277-287.
18. Duran, R., and M. Ruiz-García. 2001. Genetic population history relationships of the population of Bogota, Columbia, by using the D1S80, VWA, and TH01 molecular markers. Am. J. Hum. Biol. 13:374-383.
19. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package), Version 3.5c. Seattle: Department of Genetics, University of Washington.
20. Flores, I., I. Frias, V. Prieto et al. 2001. Population data for southern Spain and Canary Islands of HLA-DQA1, PM, and D1S80 loci. Forensic Sci. Int. 119:116-118.
21. Guthrie, M. 1971. Comparative Bantu: An Introduction to the Comparative Linguistics and Prehistory of the Bantu Languages, v. 2, Bantu Prehistory, Inventory, and Indexes. Farnborough, UK: Gregg International.
22. Gutowski, S., B. Budowle, J. Auer et al. 1995. Statistical analysis of an Australian population for the loci Gc, HLA-DQA1, D1S80, and HUMTH01. Forensic Sci. Int. 76:1-6.
23. Halos, S.C., J.Y. Chu, A.C.M. Ferreon et al. 1999. Philippine population database at nine microsatellite loci for forensic and paternity applications. Forensic Sci. Int. 101:27-32.
24. Harich, N., E. Esteban, A. Chafik et al. 2002. Classical polymorphisms in Berbers from Moyen Atlas (Morocco): Genetics, geography, and historical evidence in the Mediterranean peoples. Ann. Hum. Biol. 29(5):473-487.
25. Holden, C.J. 2002. Bantu language trees reflect the spread of farming across sub-Saharan: A maximum-parsimony analysis. Proc. R. Soc. Lond. 269:793-799.
26. Huffman, T.N. 1982. Archeology and ethnohistory of the African Iron Age. Ann. Rev. Anthropol. 11:133-150.
27. Hutz, M.H., V.S. Mattevi, S.M. Callegari-Jaques et al. 1997. D1S80 locus variability in South American Indians. Ann. Hum. Biol. 24:249-255.
28. Kasai, K., Y. Nakamura, and R. White. 1990. Amplification of a variable number of tandem repeats (VNTR) locus (pMCT118) by the polymerase chain reaction (PCR) and its application to forensic science. J. Forensic Sci. 35:1196-2000.
29. Klitz, W., R. Reynolds, J. Chen et al. 2000. Analysis of genotype frequencies and interlocus association for the PM, DQA1, and D1S80 loci in four populations. J. Forensic Sci. 45:1009-1015.
30. Lee, J.W., H.-S. Lee, M. Park et al. 2001. Evaluation of DNA match probability in criminal case. Forensic Sci. Int. 116:139-148.
31. Levinson, D. 1998. Ethnic Groups Worldwide: A Ready Reference Handbook. Phoenix: Oryx Press, 111, 115, 140, 152, 159-160.
32. Lewis, P.O., and D. Zaykin. 2001. Genetic Data Analysis: Computer program for the analysis of allelic data, Version 1.0 (d16c). Free program distributed by the authors; available at http://lewis.eeb.uconn.edu/lewishome/software.html.
33. Li, C.C. 1976. First Course in Population Genetics. Pacific Grove, CA: Boxwood Press.
34. Lorente, M., J.A. Lorente, M.R. Wilson et al. 1997. Spanish population data on seven loci: D1S80, D17S5, HUMTH01, HUMVWA, ACTBP2, D21S11, and HLA-DQA1. Forensic Sci. Int. 86:163-171.
35. Maxon, R.M. 2002. Kenya. Microsoft Encarta Online. Available at http://encarta.msn.com. Redmon, WA: Microsoft Corporation.
36. Monson, K., and B. Budowle. 1998. Effect of reference database on frequency estimates of polymerase chain reaction (PCR)-based DNA profiles. J. Forensic Sci. 43:483-488.
37. Murdock, G.P. 1959. Africa: Its Peoples and Their Culture History. New York: McGraw-Hill, 111, 127, 392.
38. Nakamura, Y., M. Carlson, K. Krapcho et al. 1988. Isolation and mapping of a polymorphic DNA sequence (pMCT118) on chromosome 1p(D1S80). Nucleic Acids Res. 16:9364.
39. Novick, G.E., C.C. Novick, J. Yunis et al. 1995. Polymorphic human specific Alu insertions as markers for human identification. Electrophoresis 16:1596-1601.
40. Pereira, L., L. Gusmao, C. Alves et al. 2002. Bantu and European Y-lineages in sub-Saharan Africa. Ann. Hum. Genet. 66(6):369-378.
41. Peterson, B., B. Su, R. Chakraborty et al. 2000. World population data for the HLA-DQA1, PM, and D1S80 loci with least and most common profile frequencies for combinations of loci estimated following NRC II guidelines. J. Forensic Sci. 45:118-146.
42. Rangel-Villalobos, H., F. Rivas, M. Torres-Rodríguez et al. 1999. Allele frequency distributions of six Amp-FLPs (D1S80, APO-B, VWA, TH01, CSF1PO, and HPRTB) in a Mexican population. Forensic Sci. Int. 105:125-129.
43. Rohlf, F.J. 2002. Numerical Taxonomy System (NTSys pc), Version 2.1. Setauket, NY: Exeter Publishing.
44. Saferstein, R. 1982. Forensic Science Handbook, v. 1. Englewood Cliffs, NJ: Prentice Hall.
45. Salzano, F.M. 2002. Molecular variability in Amerindians: Widespread but uneven information. Ann. Braz. Acad. Sci. 74(2):223-263.
46. Schmidt, P.R. 1975. A new look at interpretations of the Early Iron Age in East Africa. Hist. Afr. 2:127-136.
47. Tahir, M.A., S.K. Sinha, N. A-Al-Kubaidan et al. 2000. Distribution of amplified fragment length polymorphism D1S80 alleles in a Saudi Arabian population. J. Forensic Sci. 45:1159.
48. Vansina, J. 1990. Paths in the Rainforests: Toward a History of Political Tradition in Equatorial Africa. London: Elsevier.
49. Wake Forest University. 2002. Population genetics of gene flow. Available from www.wfu.edu/users/sipet00g/populationgenetics.html.
50. Walkinshaw, M., L. Strickland, H. Hamilton et al. 1996. DNA profiling in two Alaskan Native populations using HLA-DQA1, PM, and D1S80 loci. J. Forensic Sci. 41:478-484.
51. Watkins, W.S., C.E. Ricker, M.J. Bamshad et al. 2001. Patterns of ancestral human diversity: An analysis of Alu-insertion and restriction-site polymorphisms. Am. J. Hum. Genet. 68:738-752.
52. Williamson, K., and R. Blench. 2000. Niger-Congo. In African Languages: An Introduction, B. Heine and D. Nurse, eds. Cambridge: Cambridge University Press, 11-42.