Osmotic Stress and DNA Damage

Methods in Enzymology

Volumn 428, Issue , 2007, Pages 241-252

  Dmitrieva, Natalia I ^a   Burg, Maurice B ^a  

^a NATIONAL HEART LUNG AND BLOOD INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL DNA;

COMET ASSAY; CYTOLYSIS; DNA DAMAGE; DNA DEGRADATION; DNA STRAND BREAKAGE; HUMAN; KIDNEY CORTEX; KIDNEY MEDULLA; NICK END LABELING; NONHUMAN; OSMOREGULATION; OSMOTIC STRESS; OXIDATIVE STRESS; PRIORITY JOURNAL; REVIEW; APOPTOSIS; ARTICLE; METHODOLOGY; OSMOTIC PRESSURE; PHYSIOLOGY;

MAMMALIA;

APOPTOSIS; COMET ASSAY; DNA DAMAGE; IN SITU NICK-END LABELING; OSMOTIC PRESSURE;

EID: 35748977924     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(07)28013-9     Document Type: Chapter

References (41)

1. Ansari B., Coates P.J., Greenstein B.D., and Hall P.A. In situ end-labeling detects DNA strand breaks in apoptosis and other physiological and pathological states. J. Pathol. 170 (1993) 1-8
2. Bradley M.O., Erickson L.C., and Kohn K.W. Non-enzymatic DNA strand breaks induced in mammalian cells by fluorescent light. Biochim. Biophys. Acta 520 (1978) 11-20
3. Charriaut-Marlangue C., and Ben-Ari Y. A cautionary note on the use of the TUNEL stain to determine apoptosis. Neuroreport 7 (1995) 61-64
4. Collins A.R. The comet assay: Principles, applications, and limitations. In: Didenko V.V. (Ed). "In Situ Detection of DNA Damage: Methods and Protocols" Vol. 203 (2002), Humana Press, Totowa, NJ 163-177
5. Collins A.R., Dobson V.L., Dusinska M., Kennedy G., and Stetina R. The comet assay: What can it really tell us?. Mutat. Res. 375 (1997) 183-193
6. Collins A.R., Dusinska M., Gedik C.M., and Stetina R. Oxidative damage to DNA: Do we have a reliable biomarker?. Environ. Health Perspect. 104 Suppl. 3 (1996) 465-469
7. Collins A.R., Duthie S.J., and Dobson V.L. Direct enzymic detection of endogenous oxidative base damage in human lymphocyte DNA. Carcinogenesis 14 (1993) 1733-1735
8. Cook P.R., Brazell I.A., and Jost E. Characterization of nuclear structures containing superhelical DNA. J. Cell Sci. 22 (1976) 303-324
9. Davison F.D., Groves M., and Scaravilli F. The effects of formalin fixation on the detection of apoptosis in human brain by in situ end-labelling of DNA. Histochem. J. 27 (1995) 983-988
10. Didenko V.V. "In Situ Detection of DNA damage: Methods and Protocols." (2002), Humana Press, Totowa, NJ
11. Dmitrieva N., Michea L., and Burg M. p53 Protects renal inner medullary cells from hypertonic stress by restricting DNA replication. Am. J. Physiol. Renal Physiol. 281 (2001) F522-F530
12. Dmitrieva N.I., Bulavin D.V., Fornace Jr. A.J., and Burg M.B. Rapid activation of G2/M checkpoint after hypertonic stress in renal inner medullary epithelial (IME) cells is protective and requires p38 kinase. Proc. Natl. Acad. Sci. USA 99 (2002) 184-189
13. Dmitrieva N.I., Cai Q., and Burg M.B. Cells Adapted to high NaCl have many DNA breaks and impaired DNA repair both in cell culture and in vivo. Proc. Natl. Acad. Sci. USA 101 (2004) 2317-2322
14. Dmitrieva N.I., Celeste A., Nussenzweig A., and Burg M.B. Ku86 preserves chromatin integrity in cells adapted to high NaCl. Proc. Natl. Acad. Sci. USA 102 (2005) 10730-10735
15. Dmitrieva N.I., Ferraris J.D., Norenburg J.L., and Burg M.B. The saltiness of the sea breaks DNA in marine invertebrates: Possible implications for animal evolution. Cell Cycle 5 (2006) 1320-1323
16. Gavrieli Y., Sherman Y., and Ben-Sasson S.A. Identification of programmed cell death in situ via specific labeling of nuclear DNA fragmentation. J. Cell Biol. 119 (1992) 493-501
17. Helma C., and Uhl M. A public domain image-analysis program for the single-cell gel-electrophoresis (comet) assay. Mutat. Res. 466 (2000) 9-15
18. Kanoh M., Takemura G., Misao J., Hayakawa Y., Aoyama T., Nishigaki K., Noda T., Fujiwara T., Fukuda K., Minatoguchi S., and Fujiwara H. Significance of myocytes with positive DNA in situ nick end-labeling (TUNEL) in hearts with dilated cardiomyopathy: Not apoptosis but DNA repair. Circulation 99 (1999) 2757-2764
19. Kelly R.B., Cozzarelli N.R., Deutscher M.P., Lehman I.R., and Kornberg A. Enzymatic synthesis of deoxyribonucleic acid. XXXII. Replication of duplex deoxyribonucleic acid by polymerase at a single strand break. J. Biol. Chem. 245 (1970) 39-45
20. Klenow H., and Henningsen I. Selective elimination of the exonuclease activity of the deoxyribonucleic acid polymerase from Escherichia coli B by limited proteolysis. Proc. Natl. Acad. Sci. USA 65 (1970) 168-175
21. Kultz D., and Chakravarty D. Hyperosmolality in the form of elevated NaCl but not urea causes DNA damage in murine kidney cells. Proc. Natl. Acad. Sci. USA 98 (2001) 1999-2004
22. Kultz D., Madhany S., and Burg M.B. Hyperosmolality causes growth arrest of murine kidney cells: Induction of GADD45 and GADD153 by osmosensing via stress-activated protein kinase 2. J. Biol. Chem. 273 (1998) 13645-13651
23. Li X., and Darzynkiewicz Z. Labelling DNA strand breaks with BrdUTP: Detection of apoptosis and cell proliferation. Cell Prolif. 28 (1995) 571-579
24. Loo D.T. TUNEL assay: An overview of techniques. In: Didenko V.V. (Ed). "In Situ Detection of DNA Damage: Methods and Protocols" Vol. 203 (2002), Humana Press, Totowa, NJ 21-30
25. Lucassen P.J., Chung W.C., Vermeulen J.P., Van Lookeren C.M., van Dierendonck J.H., and Swaab D.F. Microwave-enhanced in situ end-labeling of fragmented DNA: Parametric studies in relation to postmortem delay and fixation of rat and human brain. J. Histochem. Cytochem. 43 (1995) 1163-1171
26. Manoharan K., Kinder D., and Banerjee M.R. DMBA induced DNA damage and repair in mammary epithelial cells in vitro measured by a nick translation assay. Cancer Biochem. Biophys. 9 (1987) 127-132
27. Migheli A., Cavalla P., Marino S., and Schiffer D. A study of apoptosis in normal and pathologic nervous tissue after in situ end-labeling of DNA strand breaks. J. Neuropathol. Exp. Neurol. 53 (1994) 606-616
28. Modak S.P., and Price G.B. Exogenous DNA polymerase-catalysed incorporation of deoxyribonucleotide monophosphates in nuclei of fixed mouse-brain cells. Exp. Cell Res. 65 (1971) 289-296
29. Nishiyama K., Kwak S., Takekoshi S., Watanabe K., and Kanazawa I. In situ nick end-labeling detects necrosis of hippocampal pyramidal cells induced by kainic acid. Neurosci. Lett. 212 (1996) 139-142
30. Nose K., and Okamoto H. Detection of carcinogen-induced DNA breaks by nick translation in permeable cells. Biochem. Biophys. Res. Commun. 111 (1983) 383-389
31. Olive P.L. The comet assay: An overview of techniques. In: Didenko V.V. (Ed). "In Situ Detection of DNA Damage: Methods and Protocols" Vol. 203 (2002), Humana Press, Totowa, NJ 179-194
32. Olive P.L., Banath J.P., and Durand R.E. Heterogeneity in radiation-induced DNA damage and repair in tumor and normal cells measured using the "comet" assay. Radiat. Res. 122 (1990) 86-94
33. Olive P.L., Wlodek D., and Banath J.P. DNA double-strand breaks measured in individual cells subjected to gel electrophoresis. Cancer Res. 51 (1991) 4671-4676
34. Ostling O., and Johanson K.J. Microelectrophoretic study of radiation-induced DNA damages in individual mammalian cells. Biochem. Biophys. Res. Commun. 123 (1984) 291-298
35. Santos B.C., Chevaile A., Hebert M.J., Zagajeski J., and Gullans S.R. A combination of NaCl and urea enhances survival of IMCD cells to hyperosmolality. Am. J. Physiol. 274 (1998) F1167-F1173
36. Singh N.P., McCoy M.T., Tice R.R., and Schneider E.L. A simple technique for quantitation of low levels of DNA damage in individual cells. Exp. Cell Res. 175 (1988) 184-191
37. Snyder R.D., and Matheson D.W. Nick translation: A new assay for monitoring DNA damage and repair in cultured human fibroblasts. Environ. Mutagen. 7 (1985) 267-279
38. van Dierendonck J.H. DNA damage detection using DNA polymerase I or its Klenov fragment. In: Didenko V.V. (Ed). "In Situ Detection of DNA Damage: Methods and Protocols" Vol. 203 (2002), Humana Press, Totowa, NJ 81-108
39. Walker P.R., Carson C., Leblanc J., and Sikorska M. Labeling DNA damage with terminal transferase: Applicability, specificity, and limitations. In: Didenko V.V. (Ed). "In Situ Detection of DNA Damage: Methods and Protocols" Vol. 203 (2002), Humana Press, Totowa, NJ 3-19
40. Wood K.A. Labeling DNA breaks in situ by Klenow enzyme. In: Didenko V.V. (Ed). "In Situ Detection of DNA Damage: Methods and Protocols" Vol. 203 (2002), Humana Press, Totowa, NJ 109-119
41. Zhang Z., Dmitrieva N.I., Park J.H., Levine R.L., and Burg M.B. High urea and NaCl carbonylate proteins in renal cells in culture and in vivo, and high urea causes 8-oxoguanine lesions in their DNA. Proc. Natl. Acad. Sci. USA 101 (2004) 9491-9496