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Volumn 5, Issue 1, 2006, Pages

Parameter estimation for the exponential-normal convolution model for background correction of affymetrix GeneChip data

Author keywords

Bioconductor; Oligonucleotide arrays; RMA; ROC curve; Spike in experiments

Indexed keywords

DNA;

EID: 33749027459     PISSN: 15446115     EISSN: 15446115     Source Type: Journal    
DOI: 10.2202/1544-6115.1237     Document Type: Article
Times cited : (29)

References (22)
  • 2
    • 0141966130 scopus 로고    scopus 로고
    • technical report, Affymetrix, Inc.
    • Affymetrix, Inc., 2002. Statistical Algorithms Description Document, technical report, Affymetrix, Inc. http://www.affymetrix.com/support/technical/ whitepapers/sadd whitepaper.pdf.
    • (2002) Statistical Algorithms Description Document
  • 4
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: From disarray to consolidation and consensus
    • Allison D.B., Cui X., Page G.P., and Sabripour M., 2006. Microarray data analysis: from disarray to consolidation and consensus. Nature Reviews Genetics, 7, 55-65.
    • (2006) Nature Reviews Genetics , vol.7 , pp. 55-65
    • Allison, D.B.1    Cui, X.2    Page, G.P.3    Sabripour, M.4
  • 6
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on the variance and bias
    • Bolstad B.M., Irizarry R.A., Astrand M., and Speed T.P., 2003. A comparison of normalization methods for high density oligonucleotide array data based on the variance and bias. Bioinformatics, 19, 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 7
    • 22144461265 scopus 로고    scopus 로고
    • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
    • Choe S.E., Boutros M., Michelson A.M., Church G.M., and Halfon M.S., 2005. Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biology, 6, R16.
    • (2005) Genome Biology , vol.6
    • Choe, S.E.1    Boutros, M.2    Michelson, A.M.3    Church, G.M.4    Halfon, M.S.5
  • 10
    • 33748990515 scopus 로고    scopus 로고
    • Who are those strangers in the Latin Square?
    • Johnson K.F., Lin S.M., editors. New York: Springer-Verlag
    • Hseih W.P., Chu T.Z., and Wolfinger R., 2003. Who are those strangers in the Latin Square? in: Johnson K.F., Lin S.M., editors. Methods of Microarray Data Analysis III. New York: Springer-Verlag, 199-208.
    • (2003) Methods of Microarray Data Analysis III , pp. 199-208
    • Hseih, W.P.1    Chu, T.Z.2    Wolfinger, R.3
  • 14
    • 33646375698 scopus 로고    scopus 로고
    • Treating expression levels of different genes as a sample in microarray data analysis: Is it worth a risk?
    • Article 9
    • Klebanov L. and Yakovlev A., 2006. Treating expression levels of different genes as a sample in microarray data analysis: Is it worth a risk? Statistical Applications in Genetics and Molecular Biology, 5 (1), Article 9. http://www.bepress.com/sagmb/vol5/iss1/art9/
    • (2006) Statistical Applications in Genetics and Molecular Biology , vol.5 , Issue.1
    • Klebanov, L.1    Yakovlev, A.2
  • 15
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li C. and Wong H.W., 2001. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proceedings of the National Academy of Sciences, 98, 31-36.
    • (2001) Proceedings of the National Academy of Sciences , vol.98 , pp. 31-36
    • Li, C.1    Wong, H.W.2
  • 16
    • 4244123075 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • Li C. and Wong H.W., 2001. Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biology, 8, http://genomebiology.com/2001/2/8/research/0032.
    • (2001) Genome Biology , pp. 8
    • Li, C.1    Wong, H.W.2
  • 17
    • 33749039114 scopus 로고    scopus 로고
    • New spike-in probe sets for the Affymetrix HG-U133A Latin Square experiment
    • Article 5
    • McGee M. and Chen Z., 2006. New spike-in probe sets for the Affymetrix HG-U133A Latin Square experiment. COBRA Preprint Series, Article 5. http://www.biostatsresearch.com/cobra/ps/art5.
    • (2006) COBRA Preprint Series
    • McGee, M.1    Chen, Z.2
  • 19
    • 0003854151 scopus 로고
    • Addison-Wesley, Reading, Massachusetts
    • Tukey J.W., 1977. Exploratory Data Analysis. Addison-Wesley, Reading, Massachusetts, 366-369.
    • (1977) Exploratory Data Analysis , pp. 366-369
    • Tukey, J.W.1
  • 22
    • 27744579507 scopus 로고    scopus 로고
    • An expression index for Affymetrix GeneChips based on the generalized logarithm
    • Zhou L. and Rocke D.M., 2005. An expression index for Affymetrix GeneChips based on the generalized logarithm. Bioinformatics, 21, 3983-3989.
    • (2005) Bioinformatics , vol.21 , pp. 3983-3989
    • Zhou, L.1    Rocke, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.