-
2
-
-
0141966130
-
-
technical report, Affymetrix, Inc.
-
Affymetrix, Inc., 2002. Statistical Algorithms Description Document, technical report, Affymetrix, Inc. http://www.affymetrix.com/support/technical/ whitepapers/sadd whitepaper.pdf.
-
(2002)
Statistical Algorithms Description Document
-
-
-
4
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
Allison D.B., Cui X., Page G.P., and Sabripour M., 2006. Microarray data analysis: from disarray to consolidation and consensus. Nature Reviews Genetics, 7, 55-65.
-
(2006)
Nature Reviews Genetics
, vol.7
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
6
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on the variance and bias
-
Bolstad B.M., Irizarry R.A., Astrand M., and Speed T.P., 2003. A comparison of normalization methods for high density oligonucleotide array data based on the variance and bias. Bioinformatics, 19, 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
7
-
-
22144461265
-
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
-
Choe S.E., Boutros M., Michelson A.M., Church G.M., and Halfon M.S., 2005. Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biology, 6, R16.
-
(2005)
Genome Biology
, vol.6
-
-
Choe, S.E.1
Boutros, M.2
Michelson, A.M.3
Church, G.M.4
Halfon, M.S.5
-
8
-
-
1342330572
-
A benchmark for Affymetrix GeneChip Expression measures
-
Cope L.M., Irizarry R.A., Jaffee H.A., Wu Z., and Speed T.P., 2004. A benchmark for Affymetrix GeneChip Expression measures. Bioinformatics, 20, 323-331.
-
(2004)
Bioinformatics
, vol.20
, pp. 323-331
-
-
Cope, L.M.1
Irizarry, R.A.2
Jaffee, H.A.3
Wu, Z.4
Speed, T.P.5
-
9
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman R.C., Carey V.J., Bates D.M., Bolstad B.M., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., Gentry J., Hornik K., Hothorn T., Huber W., Iacus S., Irizarry RA., Cheng L., Maechler M., Rossini A.J., Sawitzki G., Smith C., Smyth G., Tierney L., Yang J.W.H., and Zhang J., 2004. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biology, 5, R80.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.M.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.A.15
Cheng, L.16
Maechler, M.17
Rossini, A.J.18
Sawitzki, G.19
Smith, C.20
Smyth, G.21
Tierney, L.22
Yang, J.W.H.23
Zhang, J.24
more..
-
10
-
-
33748990515
-
Who are those strangers in the Latin Square?
-
Johnson K.F., Lin S.M., editors. New York: Springer-Verlag
-
Hseih W.P., Chu T.Z., and Wolfinger R., 2003. Who are those strangers in the Latin Square? in: Johnson K.F., Lin S.M., editors. Methods of Microarray Data Analysis III. New York: Springer-Verlag, 199-208.
-
(2003)
Methods of Microarray Data Analysis III
, pp. 199-208
-
-
Hseih, W.P.1
Chu, T.Z.2
Wolfinger, R.3
-
12
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry R.A., Bolstad B.M., Collin F., Cope L.M., Hobbs B., and Speed T.P., 2003. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Research, 31, 4, e15.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.4
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
13
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry R.A., Hobbs B., Collin F., Beazer-Barclay Y.D., Antonellis K.J., Scherf U., and Speed T.P., 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
14
-
-
33646375698
-
Treating expression levels of different genes as a sample in microarray data analysis: Is it worth a risk?
-
Article 9
-
Klebanov L. and Yakovlev A., 2006. Treating expression levels of different genes as a sample in microarray data analysis: Is it worth a risk? Statistical Applications in Genetics and Molecular Biology, 5 (1), Article 9. http://www.bepress.com/sagmb/vol5/iss1/art9/
-
(2006)
Statistical Applications in Genetics and Molecular Biology
, vol.5
, Issue.1
-
-
Klebanov, L.1
Yakovlev, A.2
-
15
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C. and Wong H.W., 2001. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proceedings of the National Academy of Sciences, 98, 31-36.
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, H.W.2
-
16
-
-
4244123075
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
Li C. and Wong H.W., 2001. Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biology, 8, http://genomebiology.com/2001/2/8/research/0032.
-
(2001)
Genome Biology
, pp. 8
-
-
Li, C.1
Wong, H.W.2
-
17
-
-
33749039114
-
New spike-in probe sets for the Affymetrix HG-U133A Latin Square experiment
-
Article 5
-
McGee M. and Chen Z., 2006. New spike-in probe sets for the Affymetrix HG-U133A Latin Square experiment. COBRA Preprint Series, Article 5. http://www.biostatsresearch.com/cobra/ps/art5.
-
(2006)
COBRA Preprint Series
-
-
McGee, M.1
Chen, Z.2
-
19
-
-
0003854151
-
-
Addison-Wesley, Reading, Massachusetts
-
Tukey J.W., 1977. Exploratory Data Analysis. Addison-Wesley, Reading, Massachusetts, 366-369.
-
(1977)
Exploratory Data Analysis
, pp. 366-369
-
-
Tukey, J.W.1
-
20
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu Z., Irizarry R.A., Gentleman R., Martinez-Murillo F., and Spencer F., 2004. A model-based background adjustment for oligonucleotide expression arrays. Journal of the American Statistical Association, 99, 909-917.
-
(2004)
Journal of the American Statistical Association
, vol.99
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Martinez-Murillo, F.4
Spencer, F.5
-
21
-
-
16644372401
-
Response to Preprocessing of oligonucleotide array data
-
Zhang L., Wu C., Carta R., Baggerly K., and Coombes, K.R., 2004. Response to Preprocessing of oligonucleotide array data. Nature Biotechnology, 22, 658-658.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 658-658
-
-
Zhang, L.1
Wu, C.2
Carta, R.3
Baggerly, K.4
Coombes, K.R.5
-
22
-
-
27744579507
-
An expression index for Affymetrix GeneChips based on the generalized logarithm
-
Zhou L. and Rocke D.M., 2005. An expression index for Affymetrix GeneChips based on the generalized logarithm. Bioinformatics, 21, 3983-3989.
-
(2005)
Bioinformatics
, vol.21
, pp. 3983-3989
-
-
Zhou, L.1
Rocke, D.M.2
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