Identification of differentially expressed genes from the cross-subfamily cloned embryos derived from zebrafish nuclei and rare minnow enucleated eggs

Theriogenology

Volumn 68, Issue 9, 2007, Pages 1282-1291

  Pei, D S ^a   Sun, Y H ^a   Chen, S P ^a   Wang, Y P ^a   Hu, W ^a   Zhu, Z Y ^a  

^a INSTITUTE OF HYDROBIOLOGY   (China)

Author keywords

Cross subfamily cloned embryos; Nuclear reprogramming; Nuclear transfer; Nucleo cytoplasmic interaction; Suppression subtractive hybridization

Indexed keywords

PRIMER DNA;

ANIMAL; ANIMAL DISEASE; ANIMAL EMBRYO; ARTICLE; CELL NUCLEUS TRANSPLANTATION; CHEMISTRY; CLONING; CLUSTER ANALYSIS; CYPRINIFORMES; EXPRESSED SEQUENCE TAG; GENE EXPRESSION REGULATION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PRENATAL DEVELOPMENT; RADIATION EXPOSURE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ZEBRA FISH;

ANIMALS; BASE SEQUENCE; CLONING, ORGANISM; CLUSTER ANALYSIS; CYPRINIDAE; DNA PRIMERS; EMBRYO, NONMAMMALIAN; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MOLECULAR SEQUENCE DATA; NUCLEAR TRANSFER TECHNIQUES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; ZEBRAFISH;

CYPRINIDAE; DANIO RERIO;

EID: 35648944264     PISSN: 0093691X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.theriogenology.2007.08.027     Document Type: Article

References (41)

1. Zhu Z.Y., and Sun Y.H. Embryonic and genetic manipulation in fish. Cell Res 10 (2000) 17-27
2. Sun Y.H., Chen S.P., Wang Y.P., Hu W., and Zhu Z.Y. Cytoplasmic impact on cross-genus cloned fish derived from transgenic common carp (Cyprinus carpio) nuclei and goldfish (Carassius auratus) enucleated eggs. Biol Reprod 72 (2005) 510-515
3. Tung T.C., Wu S.C., Tung Y.Y.F., Yan S.Y., Tu M., and Lu T.Y. Nuclear transplantation in fish. Science Bulletin, Academia Sinica (in Chinese) 7 (1963) 60-61
4. Yan S.Y. The nucleo-cytoplasmic interaction as revealed by nuclear transplantation in fish. In: Malacinski G.M. (Ed). Cytoplasmic organization systems: a primer in developmental biology (1989), McGraw-Hill, New York 61-81
5. Yan S.Y. Cloning in fish: nucleocytoplasmic hybrids. Rev. ed. (1998), Educational and Cultural Press, H.K.
6. Gasaryan K.G., Hung N.M., Neyfakh A.A., and Ivanenkov V.V. Nuclear transplantation in teleost Misgurnus fossilis L. Nature 280 (1979) 585-587
7. Niwa K., Ladygina T., Kinoshita M., Ozato K., and Wakamatsu Y. Transplantation of blastula nuclei to non-enucleated eggs in the medaka, Oryzias latipes. Dev Growth Differ 41 (1999) 163-172
8. Lee K.Y., Huang H., Ju B., Yang Z., and Lin S. Cloned zebrafish by NT from long-term-cultured cells. Nat Biotechnol 20 (2002) 795-799
9. He S., Liu H., Chen Y., Kuwahara M., Nakajima T., and Zhong Y. Molecular phylogenetic relationships of Eastern Asian Cyprinidae (pisces: cypriniformes) inferred from cytochrome b sequences. Sci China C Life Sci 47 (2004) 130-138
10. Pei D.S., Sun Y.H., Chen S.P., Wang Y.P., and Zhu Z.Y. Cloning and characterization of cytochrome c oxidase subunit I (COXI) in Gobiocypris rarus. DNA Seq 18 (2007) 1-8
11. Grunwald D.J., and Eisen J.S. Headwaters of the zebrafish-emergence of a new model vertebrate. Nat Rev Genet 3 (2002) 717-724
12. Key B., and Devine C.A. Zebrafish as an experimental model: strategies for developmental and molecular neurobiology studies. Methods Cell Sci 25 (2003) 1-6
13. Wang J. Acute effects of high concentration of dissolved free carbon dioxide and low dissolved oxygen on rare minnow. Acta Hydrobiol Sinica (in Chinese) 19 (1995) 84-88
14. Qun-Fang Z., Gui-Bin J., and Ji-Yan L. Effects of sublethal levels of tributyltin chloride in a new toxicity test organism: the Chinese rare minnow (Gobiocypris rarus). Arch Environ Contam Toxicol 42 (2002) 332-337
15. Zhong J., Wang Y., and Zhu Z. Introduction of the human lactoferrin gene into grass carp (Ctenopharyngodon idellus) to increase resistance against GCH virus. Aquaculture 214 (2002) 93-101
16. Wang J., and Cao W. Gobiocypris rarus and fishes as laboratory animals. Trans Chin Ichthyol Soc 6 (1997) 144-152
17. Yan S.Y., Tu M., Yang H.Y., Mao Z.G., Zhao Z.Y., Fu L.J., et al. Developmental incompatibility between cell nucleus and cytoplasm as revealed by nuclear transplantation experiments in teleost of different families and orders. Int J Dev Biol 34 (1990) 255-266
18. Loi P., Ptak G., Barboni B., Fulka Jr. J., Cappai P., and Clinton M. Genetic rescue of an endangered mammal by cross-species nuclear transfer using post-mortem somatic cells. Nat Biotechnol 19 (2001) 962-964
19. Gibbons J., Arat S., Rzucidlo J., Miyoshi K., Waltenburg R., Respess D., et al. Enhanced survivability of cloned calves derived from roscovitine-treated adult somatic cells. Biol Reprod 66 (2002) 895-900
20. Kimmel C.B., Ballard W.W., Kimmel S.R., Ullmann B., and Schilling T.F. Stages of embryonic development of the zebrafish. Dev Dyn 203 (1995) 253-310
21. Blin N., and Stafford D.W. A general method for isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res 3 (1976) 2303-2308
22. Paran I., and Michelmore R.W. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. TAG Theor Appl Genet 85 (1993) 985-993
23. Pei D.S., Sun Y.H., Chen S.P., Wang Y.P., Hu W., and Zhu Z.Y. Zebrafish GAPDH can be used as a reference gene for expression analysis in cross-subfamily cloned embryos. Anal Biochem 363 (2007) 291-293
24. Rebrikov D.V., Britanova O.V., Gurskaya N.G., Lukyanov K.A., Tarabykin V.S., and Lukyanov S.A. Mirror orientation selection (MOS): a method for eliminating false positive clones from libraries generated by suppression subtractive hybridization. Nucleic Acids Res 28 (2000) E90
25. Livak K.J., and Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25 (2001) 402-408
26. Eisen M.B., Spellman P.T., Brown P.O., and Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95 (1998) 14863-14868
27. Schulze A., and Downward J. Analysis of gene expression by microarrays: cell biologist's gold mine or minefield?. J Cell Sci 113 Pt 23 (2000) 4151-4156
28. Masys D.R., Welsh J.B., Lynn Fink J., Gribskov M., Klacansky I., and Corbeil J. Use of keyword hierarchies to interpret gene expression patterns. Bioinformatics 17 (2001) 319-326
29. Semeiks J.R., Grate L.R., and Mian I.S. Text-based analysis of genes, proteins, aging, and cancer. Mech Ageing Dev 126 (2005) 193-208
30. Diatchenko L., Lau Y.C., Campbell A.P., Chenchik A., Mooadam F., Huang B., et al. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes. Proc Natl Acad Sci USA 93 (1996) 6025-6030
31. Sun X.Y., Li F.X., Li J., Tan Y.F., Piao Y.S., Tang S., et al. Determination of genes involved in the early process of embryonic implantation in rhesus monkey (Macaca mulatta) by suppression subtractive hybridization. Biol Reprod 70 (2004) 1365-1373
32. Kane D.A., and Kimmel C.B. The zebrafish midblastula transition. Development 119 (1993) 447-456
33. Schulte-Merker S., Hammerschmidt M., Beuchle D., Cho K.W., De Robertis E.M., and Nusslein-Volhard C. Expression of zebrafish goosecoid and no tail gene products in wild-type and mutant no tail embryos. Development 120 (1994) 843-852
34. Negrutskii B.S., and El'skaya A.V. Eukaryotic translation elongation factor 1 alpha: structure, expression, functions, and possible role in aminoacyl-tRNA channeling. Prog Nucleic Acid Res Mol Biol 60 (1998) 47-78
35. Svitkin Y.V., Pause A., Haghighat A., Pyronnet S., Witherell G., Belsham G.J., et al. The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5′ secondary structure. RNA 7 (2001) 382-394
36. Proud C.G. Regulation of eukaryotic initiation factor eIF2B. Prog Mol Subcell Biol 26 (2001) 95-114
37. Moreira P.N., Robl J.M., and Collas P. Architectural defects in pronuclei of mouse nuclear transplant embryos. J Cell Sci 116 (2003) 3713-3720
38. Sullivan E.J., Kasinathan S., Kasinathan P., Robl J.M., and Collas P. Cloned calves from chromatin remodeled in vitro. Biol Reprod 70 (2004) 146-153
39. Nolen L.D., Gao S., Han Z., Mann M.R., Gie Chung Y., Otte A.P., et al. X chromosome reactivation and regulation in cloned embryos. Dev Biol 279 (2005) 525-540
40. McGarry T.J. Geminin deficiency causes a Chk1-dependent G2 arrest in Xenopus. Mol Biol Cell 13 (2002) 3662-3671
41. Pei DS, Sun YH, Chen SP, Wang YL, Zhu ZY. Dramatic over-expression of cytochrome C oxidase subunit I gene (COXI) in fish cross-subfamily cloned embryos. Dev Growth Differ; in press.