High-density detection of restriction-site-associated DNA markers for rapid mapping of mutated loci in Neurospora

Genetics

Volumn 177, Issue 2, 2007, Pages 1163-1171

  Lewis, Zachary A ^a   Shiver, Anthony L ^a   Stiffler, Nicholas ^a   Miller, Michael R ^a   Johnson, Eric A ^a   Selker, Eric U ^a,b  

^a UNIVERSITY OF OREGON   (United States)

^b Institute of Molecular Biology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MARKER;

ARTICLE; DNA MICROARRAY; DNA POLYMORPHISM; FUNGAL STRAIN; GENE LOCUS; GENE MAPPING; GENE MUTATION; NEUROSPORA; NONHUMAN; PRIORITY JOURNAL;

DNA, FUNGAL; GENES, FUNGAL; GENETIC MARKERS; GENOME, FUNGAL; MICROARRAY ANALYSIS; MUTATION; NEUROSPORA CRASSA; POLYMORPHISM, GENETIC; RESTRICTION MAPPING;

FUNGI; NEUROSPORA; NEUROSPORA CRASSA;

EID: 35548965487     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.078147     Document Type: Article

References (30)

1. ABIOLA, O., J. M. ANGEL, P. AVNER, A. A. BACHMANOV, J. K. BELKNAP et al., 2003 The nature and identification of quantitative trait loci: a community's view. Nat. Rev. Genet. 4: 911-916.
2. ALTSCHUL, S. F., W. GISH, W. MILLER, E. W. MYERS and D. J. LIPMAN, 1990 Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
3. BOWRING, F. J., and D. E. CATCHESIDE, 1999 Recombinational landscape across a 650-kb contig on the right arm of linkage group V in Neurospora crassa. Curr. Genet. 36: 270-274.
4. DAVIS, R. H., and F. J. DE SERRES, 1970 Genetic and microbiological research techniques for Neurospora crassa. Methods Enzymol. 17A: 47-143.
5. DAVIS, R. H., and D. D. PERKINS, 2002 Timeline: Neurospora - a model of model microbes. Nat. Rev. Genet. 3: 397-403.
6. DUNLAP, J. C., K. A. BORKOVICH, M. R. HENN, G. E. TURNER, M. S. SACHS et al., 2007 Enabling a community to dissect an organism: overview of the Neurospora functional genomics project. Adv. Genet. 57: 49-96.
7. GALAGAN, J. E., S. E. CALVO, K. A. BORKOVICH, E. U. SELKER, N. D. READ et al., 2003 The genome sequence of the filamentous fungus Neurospora crassa. Nature 422: 859-868.
8. GALAGAN, J. E., M. R. HENN, L. J. MA, C. A. CUOMO and B. BIRREN, 2005 Genomics of the fungal kingdom: insights into eukaryotic biology. Genome Res. 15: 1620-1631.
9. IRELAN, J. T., and E. U. SELKER, 1997 Cytosine methylation associated with repeat-induced point mutation causes epigenetic gene silencing in Neurospora crassa. Genetics 146: 509-523.
10. JIN, Y., S. ALLAN, L. BABER, E. K. BHATTARAI, T. M. LAMB et al., 2007 Rapid genetic mapping in Neurospora crassa. Fungal Genet. Biol. 44: 455-465.
11. KASUGA, T., J. P. TOWNSEND, C. TIAN, L. B. GILBERT, G. MANNHAUPT et al., 2005 Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination. Nucleic Acids Res. 33: 6469-6485.
12. KONIECZNY, A., and F. M. AUSUBEL, 1993 A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 4: 403-410.
13. KOTIERK, M., and M. L. SMITH, 2004 PCR-based markers for genetic mapping in Neurospora crassa. Fungal Genet. Newsl. 51: 26-29.
14. LUO, Z., M. FREITAG and M. S. SACHS, 1995 Translational regulation in response to changes in amino acid availability in Neurospora crassa. Mol. Cell. Biol. 15: 5235-5245.
15. MANIATIS, T., E. F. FRITSCH and J. SAMBROOK, 1982 Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
16. MCCLUSKEY, K., 2003 The Fungal Genetics Stock Center: from molds to molecules. Adv. Appl. Microbiol. 52: 245-262.
17. METZENBERG, R. L., and J. GROTELUESCHEN, 1987 A restriction polymorphism map of Neurospora crassa: more data. Fungal Genet. Newsl. 34: 39-44.
18. METZENBERG, R. L., J. N. STEVENS, E. U. SELKER and E. MORZYCKA-WROBLEWSKA, 1984 A method for finding the genetic map position of cloned DNA fragments. Fugal Genet. Newsl. 31: 35-40.
19. MICHELMORE, R. W., I. PARAN and R. V. KESSELI, 1991 Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 88: 9828-9832.
20. MILLER, M. R., T. S. ATWOOD, B. F. EAMES, J. K. EBERHART, Y. L. YAN et al., 2007a RAD marker microarrays enable rapid mapping of zebrafish mutations. Genome Biol. 8: R105.
21. MILLER, M. R., J. P. DUNHAM, A. AMORES, W. A. CRESKO and E. A. JOHNSON, 2007b Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Res. 17: 240-248.
22. ORBACH, M. J., 1994 A cosmid with a HyR marker for fungal library construction and screening. Gene 150: 159-162.
23. PERKINS, D. D., 1990 New multicent linkage testers for centromere-linked genes and rearrangements in Neurospora. Fungal Genet. Newsl. 37: 31-32.
24. PERKINS, D. D., 1991 Neurospora alcoy linkage tester stocks with group VII marked, and their use for mapping translocations. Fungal Genet. Newsl. 38: 83.
25. PERKINS, D. D., A. RADFORD and M. S. SACHS, 2001 The Neurospora Compendium: Chromosomal Loci. Academic Press, San Diego.
26. RAGHAVACHARI, N., Y. P. BAO, G. LI, X. XIE and U. R. MULLER, 2003 Reduction of autofluorescence on DNA microarrays and slide surfaces by treatment with sodium borohydride. Anal. Biochem. 312: 101-105.
27. TANKSLEY, S. D., 1993 Mapping polygenes. Annu. Rev. Genet. 27: 205-233.
28. TIAN, C., T. KASUGA, M. S. SACHS and N. L. GLASS, 2007 Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons. Eukaryot. Cell 6: 1018-1029.
29. TURNER, B. C., D. D. PERKINS and A. FAIRFIELD, 2001 Neurospora from natural populations: a global study. Fungal Genet. Biol. 32: 67-92.
30. VOGEL, H. J., 1956 A convenient growth medium for Neurospora (medium N). Microbiol. Genet. Bull. 13: 42-43.