Genome composition and genetic diversity of Musa germplasm from China revealed by PCR-RFLP and SSR markers

Scientia Horticulturae

Volumn 114, Issue 4, 2007, Pages 281-288

  Ning, Shu Ping ^a,d   Xu, Lin Bing ^b   Lu, Yan ^c   Huang, Bing Zhi ^b   Ge, Xue Jun ^c  

^a SOUTH CHINA INSTITUTE OF BOTANY   (China)

^b INSTITUTE OF ANIMAL SCIENCE   (China)

^c SUN YAT SEN UNIVERSITY   (China)

^d UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

China; Genetic diversity; Germplasm; Musa; SSR

Indexed keywords

ALLELE; CROP PLANT; FRUIT; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIATION; GENOME; GERMPLASM; MUTATION; POLYMERASE CHAIN REACTION;

ASIA; CHINA; EURASIA; FAR EAST;

MUSA;

EID: 35548964129     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2007.07.002     Document Type: Article

References (42)

1. Akagi H., Yokozeki Y., Inagaki A., and Fujimura T. Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with these microsatellite loci. Theor. Appl. Genet. 94 (1997) 61-67
2. Bhat K.V., Bhat S.R., and Chandel K.P.S. Survey of isozyme polymorphisms for clonal identification in Musa. HortScience 67 (1992) 501-507
3. Bhat K.V., Jarret R.L., and Rana R.S. DNA profiling of banana and plantain cultivars using random amplified polymorphic DNA (RAPD) and restriction fragment length polymorphism (RFLP) markers. Electrophoresis 16 (1995) 1736-1745
4. Carreel F., Gonzalez de Leon D., Lagoda P., Lanaud C., Jenny C., Horry J.P., and Tezenas Du Montcel H. Ascertaining maternal and paternal lineage within Musa by chloroplast and mitochondrial DNA RFLP analyses. Genome 45 (2002) 679-692
5. Cordeiro G.M., Pan Y.B., and Henry R.J. Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm. Plant Sci. 165 (2003) 181-189
6. Creste S., Tulmann Neto A., de Oliveira Silva S., and Figueira A. Genetic characterization of banana cultivars (Musa spp.) from Brazil using microsatellite markers. Euphytica 132 (2003) 259-268
7. Creste S., Tulmann Neto A., Vencovsky R., de Oliveira Silva S., and Figueira A. Genetic diversity of Musa diploid and triploid accessions from the Brazilian banana breeding program estimated by microsatellite markers. Genet. Resour. Crop. Evol. 51 (2004) 723-733
8. Crouch J.H., Crouch H.K., Constandt H., Van Gysel A., Breyne P., Van Montagu M., Jarret R.L., and Ortiz R. Comparison of PCR-based molecular marker analyses of Musa breeding populations. Mol. Breed. 5 (1999) 233-244
9. D'Hont A., Paget-Goy A., Escoute J., and Carreel F. The interspecific genome structure of cultivated banana, Musa spp., revealed by genomic DNA in situ hybridisation. Theor. Appl. Genet. 100 (2000) 177-183
10. Gawel N.J., and Jarret R.L. A modified CTAB DNA extraction procedure for Musa and Ipomea. Plant Mol. Biol. Rep. 9 (1999) 262-266
11. Ge X.J., Liu M.H., Wang W.K., Schaal B.A., and Chiang T.Y. Population structure of wild bananas, Musa balbisiana, in China determined by SSR fingerprinting and cpDNA PCR-RFLP. Mol. Ecol. 14 (2005) 933-944
12. Goulão L., and Oliveira C.M. Molecular characterisation of cultivars of apple (Malus × domestica Borkh.) using microsatellite (SSR and ISSR) markers. Euphytica 122 (2001) 81-89
13. Grapin A., Noyer J.L., Carreel F., Dambier D., Baurens F.C., Lanaud C., and Lagoda P.J.L. Diploid Musa acuminata genetic diversity assayed with sequence-tagged microsatellite sites. Electrophoresis 19 (1998) 1374-1380
14. Guilford P., Prakash S., Zhu J.M., Rikkerink E., Gardiner S., Bassett H., and Forster R. Microsatellites in Malus X domestica (apple): abundance, polymorphism and cultivar identification. Theor. Appl. Genet. 94 (1997) 249-254
15. Jain S., Jain R.K., and McCouch S.R. Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor. Appl. Genet. 109 (2004) 965-977
16. Jarret R.L., Gawel N., Whittemore A., and Sharrock S. RFLP-based phylogeny of Musa species in Papua New Guinea. Theor. Appl. Genet. 84 (1992) 579-584
17. Jarret R.L., Vuylsteke D.R., Gawel N.J., Pimentel R.B., and Dunbar L.J. Detecting genetic diversity in diploid bananas using PCR and primers from a highly repetitive DNA sequence. Euphytica 68 (1993) 69-76
18. Lagoda P.J.L., Noyer J.L., Dambier D., Baurens F.C., Grapin A., and Lanaud C. Sequence tagged microsatellite site (STMS) markers in the Musaceae. Mol. Ecol. 7 (1998) 659-663
19. Lannaud C., Tezenas Du Montcel H., Jolivot M.P., Glaszmann J.C., and Gonzalez-de-Leon D. Variation of ribosomal gene spacer length among wild and cultivated bananas. Heredity 68 (1992) 147-156
20. Lian C.L., Oishi R., Miyashita N., Nara K., Nakaya H., Wu B., Zhou Z.H., and Hogetsu T. Genetic structure and reproduction dynamics of Salix reinii during primary succession of Mount Fuji, as revealed by nuclear and chloroplast microsatellite analysis. Mol. Ecol. 12 (2003) 609-618
21. Martínez L.E., Cavagnaro P.F., Masuelli R.W., and Zúñiga M. SSR-based assessment of genetic diversity in South American Vitis vinifera varieties. Plant Sci. 170 (2006) 1036-1044
22. Mengoni A., Gori A., and Bazzicalupo M. Use of RAPD and microsatellite (SSR) variation to assess genetic relationships among populations of tetraploid alfafa, Medicago sativa. Plant Breed. 119 (2000) 311-317
23. Nair A.S., Teo C.H., Schwarzacher T., and Harrison P.H. Genome classification of banana cultivars from South India using IRAP markers. Euphytica 144 (2005) 285-290
24. Nsabimana A., and van Staden J. Ploidy investigation of bananas (Musa spp.) from the National Banana Germplasm Collection at Rubona-Rwanda by flow cytometry. South Afr. J. Bot. 72 (2006) 302-305
25. Nwakanma D.C., Pillay M., Okoli B.E., and Tenkouano A. PCR-RFLP of the ribosomal DNA internal transcribed spacers (ITS) provides markers for the A and B genomes in Musa L. Theor. Appl. Genet. 108 (2003) 154-159
26. Onguso J.M., Kahangi E.M., Ndirituu D.W., and Mizutani F. Genetic characterization of cultivated bananas and plantains in Kenya by RAPD markers. Sci. Horticult. 99 (2004) 9-20
27. Oriero C.E., Odunola O.A., Lokko Y., and Ingelbrecht I. Analysis of B-genome derived simple sequence repeat (SSR) markers in Musa spp. Afr. J. Biotechnol. 5 (2006) 126-128
28. Osuji J.O., Crouch J., Harrison G., and Heslop-Harrison J.S. Molecular cytogenetics of Musa species, cultivars and hybrids: location of 18S-5.8S-25S and 5S rDNA and telomere-like sequences. Ann. Bot. 82 (1998) 243-248
29. Pillay M., Nwakanma D.C., and Tenkouano A. Identification of RAPD markers linked to A and B genome sequences in Musa L. Genome 43 (2000) 763-767
30. Pillay M., Ogundiwin E., Tenkouano A., and Dolezel J. Ploidy and genome composition of Musa germplasm at the International Institute of Tropical Agriculture (IITA). Afr. J. Biotechnol. 5 (2006) 1224-1232
31. Provan J., Powell W., and Waugh R. Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum). Theor. Appl. Genet. 92 (1996) 1078-1084
32. Raboin L.M., Carreel F., Noyer J.L., Baurens F.C., Horry J.P., Bakry F., Tezenas Du Montcel H., Ganry J., Lanaud C., and Lagoda P.J.L. Diploid ancestors of triploid export banana cultivars: molecular identification of 2n restitution gamete donors and n gamete donors. Mol. Breed. 16 (2005) 333-341
33. Rohlf F.J. NTSYS-pc. Numerical Taxonomy and Multi-variate Analysis System Version 2.1 (2000), Exeter Software, Setauket, New York
34. Sánchez-Escribano E.M., Martín J.P., Carreño J., and Cenis J.L. Use of sequence-tagged microsatellite site markers for characterizing table grape cultivars. Genome 42 (1999) 87-93
35. Simmonds N.W. Bananas. In: Smartt J., and Simmonds N.W. (Eds). Evolution of Crop Plants (1955), Longman, Essex 370-375
36. Simmonds N.W., and Shepherd K. The taxonomy and origins of the cultivated bananas. Bot. J. Linn. Soc. 55 (1955) 302-312
37. Stover R.H., and Simmonds N.W. Bananas. third ed. (1987), Longman Sc & Tech, Essex, England
38. Testolin R., Marrazzo T., Cipriani G., Quarta R., Verde I., Dettori M.T., Pancaldi M., and Sansavini S. Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43 (2000) 512-520
39. Wong C., Kiew R., Loh J.P., Gan L.H., Set O., Lee S.K., Lum S., and Gan Y.Y. Genetic diversity of the wild banana Musa acuminata Colla in Malaysia as evidenced by AFLP. Ann. Bot. 88 (2001) 1017-1025
40. Xu L.B., Yang H., Huang B.Z., and Wei Y.R. Production and R&D of banana in China. In: Molina A.B., Roa V.N., Van den Bergh I., Maghuyop M.A.G., and Borromeo K.H. (Eds). Advancing banana and plantain R&D in Asia and the Pacific (2003) 49-60
41. Yeh F.C., Yang R.C., and Boyle T. POPGENE,Version 1.31: a Microsoft Windows-Based Freeware for Population Genetic Analysis Release (1999), Department of Renewable Resources, University of Alberta, Edmonton, Canada
42. Zhang X.P., and Li B.R. Importation history and problems of major varieties of banana in China. South China Fruits 31 (2002) 30-31