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Volumn 18, Issue 6, 2007, Pages 769-782

Metabolic and phylogenetic analysis of microbial communities during phytoremediation of soil contaminated with weathered hydrocarbons and heavy metals

Author keywords

Denaturing gradient gel electrophoresis; Functional genes; Heavy metals; Hydrocarbons; Metabolic activity; Phytoremediation

Indexed keywords

DENATURING GRADIENT GEL ELECTROPHORESIS; METABOLIC ACTIVITY; PHYTOREMEDIATION;

EID: 35449004567     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-007-9105-y     Document Type: Article
Times cited : (31)

References (52)
  • 1
    • 22544452750 scopus 로고    scopus 로고
    • Inhibition of hydrocarbon bioremediation by lead in a crude oil-contaminated soil
    • AL-Saleh ES, Obuekwe C (2005) Inhibition of hydrocarbon bioremediation by lead in a crude oil-contaminated soil. Int Biodet Biodeg 56:1-7
    • (2005) Int Biodet Biodeg , vol.56 , pp. 1-7
    • Al-Saleh, E.S.1    Obuekwe, C.2
  • 3
    • 0034959381 scopus 로고    scopus 로고
    • Metabolic fingerprint of microbial communities from distinct maize rhizosphere compartments
    • Baudoin E, Benizri E, Guckert A (2001) Metabolic fingerprint of microbial communities from distinct maize rhizosphere compartments. Eur J Soil Biol 37:85-93
    • (2001) Eur J Soil Biol , vol.37 , pp. 85-93
    • Baudoin, E.1    Benizri, E.2    Guckert, A.3
  • 4
    • 0034975189 scopus 로고    scopus 로고
    • Complementarity of bioassays and microbial activity measurements for the evaluation of hydrocarbon-contaminated soils quality
    • Brohon B, Delolme C, Gourdon R (2001) Complementarity of bioassays and microbial activity measurements for the evaluation of hydrocarbon-contaminated soils quality. Soil Biol Biochem 33:883-891
    • (2001) Soil Biol Biochem , vol.33 , pp. 883-891
    • Brohon, B.1    Delolme, C.2    Gourdon, R.3
  • 5
    • 0033730070 scopus 로고    scopus 로고
    • Patterns of diversity in a plant and soil microbial communities along a productivity gradient in a Michigan old-field
    • Broughton LC, Gross KL (2000) Patterns of diversity in a plant and soil microbial communities along a productivity gradient in a Michigan old-field. Oecologia 125:420-427
    • (2000) Oecologia , vol.125 , pp. 420-427
    • Broughton, L.C.1    Gross, K.L.2
  • 6
    • 0024748375 scopus 로고
    • Effects of heavy metals in soil microbial processes and populations (a review)
    • Bååth E (1989) Effects of heavy metals in soil microbial processes and populations (a review). Water Air Soil Poll 47:335-379
    • (1989) Water Air Soil Poll , vol.47 , pp. 335-379
    • Bååth, E.1
  • 7
    • 0030199786 scopus 로고    scopus 로고
    • Land treatment of oil-based drill cuttings in an agricultural soil
    • Chaineau CH, Morel JL, Oudot J (1996) Land treatment of oil-based drill cuttings in an agricultural soil. J Environ Qual 25:858-867
    • (1996) J Environ Qual , vol.25 , pp. 858-867
    • Chaineau, C.H.1    Morel, J.L.2    Oudot, J.3
  • 8
    • 5344280497 scopus 로고    scopus 로고
    • Effects of municipal solid waste compost amendments on soil enzyme activities and bacterial genetic diversity
    • Crecchio C, Curci M, Pizzigallo MDR et al (2004) Effects of municipal solid waste compost amendments on soil enzyme activities and bacterial genetic diversity. Soil Biol Biochem 36:1595-1605
    • (2004) Soil Biol Biochem , vol.36 , pp. 1595-1605
    • Crecchio, C.1    Curci, M.2    Pizzigallo, M.D.R.3
  • 9
    • 1542403841 scopus 로고
    • The remediation of contaminated soils with green plants: An overview
    • Cunningham SD, Berti WR (1993) The remediation of contaminated soils with green plants: An overview. In Vitro Cell Dev Biol 29:207-212
    • (1993) In Vitro Cell Dev Biol , vol.29 , pp. 207-212
    • Cunningham, S.D.1    Berti, W.R.2
  • 11
    • 0343091249 scopus 로고    scopus 로고
    • Population changes of soil microbial communities induced by hydrocarbon and metal contamination
    • Dobler R, Saner M, Bachofen R (2000) Population changes of soil microbial communities induced by hydrocarbon and metal contamination. Biorem J 4:41-56
    • (2000) Biorem J , vol.4 , pp. 41-56
    • Dobler, R.1    Saner, M.2    Bachofen, R.3
  • 12
    • 0033025914 scopus 로고    scopus 로고
    • Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community level physiological profiles
    • El Fantroussi S, Verschuere L, Verstraete W et al (1999) Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community level physiological profiles. Appl Environ Microb 65:982-988
    • (1999) Appl Environ Microb , vol.65 , pp. 982-988
    • El Fantroussi, S.1    Verschuere, L.2    Verstraete, W.3
  • 14
    • 0033930976 scopus 로고    scopus 로고
    • Effect of model sorptive phases on phenanthrene biodegradation: Molecular analysis of enrichments and isolates suggests selection based on bioavailability
    • Friedrich M, Grosser RJ, Kern EA et al (2000) Effect of model sorptive phases on phenanthrene biodegradation: molecular analysis of enrichments and isolates suggests selection based on bioavailability. Appl Environ Microb 66:2703-2710
    • (2000) Appl Environ Microb , vol.66 , pp. 2703-2710
    • Friedrich, M.1    Grosser, R.J.2    Kern, E.A.3
  • 15
    • 0036800450 scopus 로고    scopus 로고
    • Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov
    • Goris J, Dejonghe W, Falsen E. et al (2002) Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Sys Appl Microbiol 25:340-352
    • (2002) Sys Appl Microbiol , vol.25 , pp. 340-352
    • Goris, J.1    Dejonghe, W.2    Falsen, E.3
  • 16
    • 0025255702 scopus 로고
    • Characterization of unresolved complex mixtures of hydrocarbons in petroleum
    • Gough MA, Rowland SJ (1990) Characterization of unresolved complex mixtures of hydrocarbons in petroleum. Nature 344:648-650
    • (1990) Nature , vol.344 , pp. 648-650
    • Gough, M.A.1    Rowland, S.J.2
  • 17
    • 2142808742 scopus 로고    scopus 로고
    • Impacts of heavy metal contamination and phytoremediation on a microbial community during a twelve-month microcosm experiment
    • Gremion F, Chatzinotas A, Kaufmann K et al (2004) Impacts of heavy metal contamination and phytoremediation on a microbial community during a twelve-month microcosm experiment. FEMS Microbiol Ecol 48:273-283
    • (2004) FEMS Microbiol Ecol , vol.48 , pp. 273-283
    • Gremion, F.1    Chatzinotas, A.2    Kaufmann, K.3
  • 18
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 19
    • 0034089476 scopus 로고    scopus 로고
    • Effects of Pinus sylvestris root growth and mycorrhizosphere development on bacterial carbon source utilization and hydrocarbon oxidation in forest and petroleum-contaminated soils
    • Heinonsalo J, Jørgensen KS, Haahtela K et al (2000) Effects of Pinus sylvestris root growth and mycorrhizosphere development on bacterial carbon source utilization and hydrocarbon oxidation in forest and petroleum-contaminated soils. Can J Microbiol 46:451-464
    • (2000) Can J Microbiol , vol.46 , pp. 451-464
    • Heinonsalo, J.1    Jørgensen, K.S.2    Haahtela, K.3
  • 21
    • 0035006152 scopus 로고    scopus 로고
    • Phytoremediation of aged petroleum sludge: Effect of inorganic fertilizer
    • Hutchinson SL, Banks MK, Schwab AP (2001a) Phytoremediation of aged petroleum sludge: effect of inorganic fertilizer. J Environ Qual 30:395-403
    • (2001) J Environ Qual , vol.30 , pp. 395-403
    • Hutchinson, S.L.1    Banks, M.K.2    Schwab, A.P.3
  • 22
    • 0034824280 scopus 로고    scopus 로고
    • Phytoremediation of aged petroleum sludge: Effect of irrigation techniques and scheduling
    • Hutchinson SL, Banks MK, Schwab AP (2001b) Phytoremediation of aged petroleum sludge: effect of irrigation techniques and scheduling. J Environ Qual 30:1516-1522
    • (2001) J Environ Qual , vol.30 , pp. 1516-1522
    • Hutchinson, S.L.1    Banks, M.K.2    Schwab, A.P.3
  • 24
    • 0031469508 scopus 로고    scopus 로고
    • Degradation of benzo[a]pyrene, dibenz[a,h]anthracene by Burkholderia cepacia
    • Juhasz AL, Britz ML, Stanley GA (1997) Degradation of benzo[a]pyrene, dibenz[a,h]anthracene by Burkholderia cepacia. Water Sci Technol 36:45-51
    • (1997) Water Sci Technol , vol.36 , pp. 45-51
    • Juhasz, A.L.1    Britz, M.L.2    Stanley, G.A.3
  • 25
    • 0032765861 scopus 로고    scopus 로고
    • Tillage changes microbial biomass and enzyme activities in particle-size fractions of a Haplic Chernozem
    • Kandeler E, Palli S, Stemmer M et al (1999) Tillage changes microbial biomass and enzyme activities in particle-size fractions of a Haplic Chernozem. Soil Biol Biochem 31:1253-1264
    • (1999) Soil Biol Biochem , vol.31 , pp. 1253-1264
    • Kandeler, E.1    Palli, S.2    Stemmer, M.3
  • 26
    • 0031920135 scopus 로고    scopus 로고
    • The use of carbon substrate utilization patterns in environmental and ecological microbiology
    • Konopka A, Oliver L, Turco RF (1998) The use of carbon substrate utilization patterns in environmental and ecological microbiology. Microb Ecol 35:103-115
    • (1998) Microb Ecol , vol.35 , pp. 103-115
    • Konopka, A.1    Oliver, L.2    Turco, R.F.3
  • 27
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader CA (1996) Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl Environ Microb 62:1102-1106
    • (1996) Appl Environ Microb , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 28
    • 17044409748 scopus 로고    scopus 로고
    • Phytoremediation: Novel approaches to cleaning up polluted soils
    • Kremer U (2005) Phytoremediation: novel approaches to cleaning up polluted soils. Curr Opinion Biotechnol 16:133-141
    • (2005) Curr Opinion Biotechnol , vol.16 , pp. 133-141
    • Kremer, U.1
  • 29
    • 0032925832 scopus 로고    scopus 로고
    • Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils
    • Lloyd-Jones G, Laurie AD, Hunter DWF et al (1999) Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils. FEMS Microbiol Ecol 29:69-79
    • (1999) FEMS Microbiol Ecol , vol.29 , pp. 69-79
    • Lloyd-Jones, G.1    Laurie, A.D.2    Hunter, D.W.F.3
  • 30
    • 0033382357 scopus 로고    scopus 로고
    • Soil lipase activity-a useful indicator of oil biodegradation
    • Margesin R, Zimmerbauer A, Schinner F (1999) Soil lipase activity-a useful indicator of oil biodegradation. Biotechnol Tech 13:859-863
    • (1999) Biotechnol Tech , vol.13 , pp. 859-863
    • Margesin, R.1    Zimmerbauer, A.2    Schinner, F.3
  • 31
    • 0033824591 scopus 로고    scopus 로고
    • The impact of hydrocarbon remediation (diesel oil and polycyclic aromatic hydrocarbons) on enzyme activities and microbial properties of soil
    • Margesin R, Walder G, Schinner F (2000) The impact of hydrocarbon remediation (diesel oil and polycyclic aromatic hydrocarbons) on enzyme activities and microbial properties of soil. Acta Biotechnol 20:313-333
    • (2000) Acta Biotechnol , vol.20 , pp. 313-333
    • Margesin, R.1    Walder, G.2    Schinner, F.3
  • 32
    • 0034971419 scopus 로고    scopus 로고
    • Influence of one or two successive annual applications of organic fertilisers on the enzyme activity of a soil under barley cultivation
    • Marcote I, Hernandez T, Garca C et al (2001) Influence of one or two successive annual applications of organic fertilisers on the enzyme activity of a soil under barley cultivation. Biores Technol 79:147-154
    • (2001) Biores Technol , vol.79 , pp. 147-154
    • Marcote, I.1    Hernandez, T.2    Garca, C.3
  • 33
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturating gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • 3
    • Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturating gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microb 59(3):695-700
    • (1993) Appl Environ Microb , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 34
    • 0001868071 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - A new molecular approach to analyse the genetic diversity of mixed microbial communities
    • Akkermans ADL,van Elsas JD, De Bruijn F (eds) Kluwer Academic Publishers, Dordrecht 1-23
    • Muyzer G, Hottenträger S, Teske A et al (1996) Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA-a new molecular approach to analyse the genetic diversity of mixed microbial communities. In: Akkermans ADL,van Elsas JD, De Bruijn F (eds) Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht p. 3.4.4:1-23
    • (1996) Molecular Microbial Ecology Manual , pp. 344
    • Muyzer, G.1    Hottenträger, S.2    Teske, A.3
  • 36
    • 0021639878 scopus 로고
    • Rates of microbial degradation of petroleum components as determined by computerized capillary gas chromatography and computerized mass spectrometry
    • Oudot J (1984) Rates of microbial degradation of petroleum components as determined by computerized capillary gas chromatography and computerized mass spectrometry. Mar Environ Res 13:277-302
    • (1984) Mar Environ Res , vol.13 , pp. 277-302
    • Oudot, J.1
  • 37
    • 17144361852 scopus 로고    scopus 로고
    • Metabolic responses of microbiota to diesel fuel addition in vegetated soil
    • Palmroth MRT, Münster U, Pichtel J et al (2005) Metabolic responses of microbiota to diesel fuel addition in vegetated soil. Biodegradation 16:91-101
    • (2005) Biodegradation , vol.16 , pp. 91-101
    • Palmroth, M.R.T.1    Münster, U.2    Pichtel, J.3
  • 38
    • 33748097662 scopus 로고    scopus 로고
    • Field-scale assessment of phytotreatment of soil contaminated with weathered hydrocarbons and heavy metals
    • Palmroth MRT, Koskinen PEP, Pichtel J et al (2006) Field-scale assessment of phytotreatment of soil contaminated with weathered hydrocarbons and heavy metals. J Soils Sediments 6:128-136
    • (2006) J Soils Sediments , vol.6 , pp. 128-136
    • Palmroth, M.R.T.1    Koskinen, P.E.P.2    Pichtel, J.3
  • 41
    • 0037677535 scopus 로고    scopus 로고
    • Impact of metals on the biodegradation of organic pollutants Environ
    • Sandrin TR, Maier RM (2003) Impact of metals on the biodegradation of organic pollutants Environ. Health Perspect 111:1093-1101
    • (2003) Health Perspect , vol.111 , pp. 1093-1101
    • Sandrin, T.R.1    Maier, R.M.2
  • 42
    • 0036327808 scopus 로고    scopus 로고
    • Association of a microbial community composition activity with lead, chromium, and hydrocarbon contamination
    • Shi W, Becker J, Bischoff M et al (2002) Association of a microbial community composition activity with lead, chromium, and hydrocarbon contamination. Appl Environ Microb 68:3859-3866
    • (2002) Appl Environ Microb , vol.68 , pp. 3859-3866
    • Shi, W.1    Becker, J.2    Bischoff, M.3
  • 43
    • 18044401488 scopus 로고    scopus 로고
    • Selection of specific endophytic bacterial genotypes by plants in response to soil contamination
    • Siciliano SD, Fortin N, Mihic A et al (2001) Selection of specific endophytic bacterial genotypes by plants in response to soil contamination. Appl Environ Microb 67:2469-2475
    • (2001) Appl Environ Microb , vol.67 , pp. 2469-2475
    • Siciliano, S.D.1    Fortin, N.2    Mihic, A.3
  • 44
    • 0346003773 scopus 로고    scopus 로고
    • Changes in Microbial Community Composition and Function during a Polyaromatic Hydrocarbon Phytoremediation Field Trial
    • Siciliano S.D. Germida J.J, Banks K et al (2003) Changes in Microbial Community Composition and Function during a Polyaromatic Hydrocarbon Phytoremediation Field Trial. Appl Environ Microb 69:483-489
    • (2003) Appl Environ Microb , vol.69 , pp. 483-489
    • Siciliano Germida, S.D.J.J.1    Banks, K.2
  • 45
    • 0036968084 scopus 로고    scopus 로고
    • Bacterial rhizosphere populations of black poplar and herbal plants to be used for phytoremediation of diesel fuel
    • Tesar M, Reichenauer TG, Sessitsch A (2002) Bacterial rhizosphere populations of black poplar and herbal plants to be used for phytoremediation of diesel fuel. Soil Biol Biochem 34:1883-1892
    • (2002) Soil Biol Biochem , vol.34 , pp. 1883-1892
    • Tesar, M.1    Reichenauer, T.G.2    Sessitsch, A.3
  • 46
    • 22144465237 scopus 로고    scopus 로고
    • Isolation of soil bacteria adapted to degrade humic acid-sorbed phenantherene
    • Vacca DJ, Bleam WF, Hickey WJ (2005) Isolation of soil bacteria adapted to degrade humic acid-sorbed phenantherene. Appl Environ Microb 71:3797-3805
    • (2005) Appl Environ Microb , vol.71 , pp. 3797-3805
    • Vacca, D.J.1    Bleam, W.F.2    Hickey, W.J.3
  • 47
    • 0028068019 scopus 로고
    • Reclamation of a bare industrial area contaminated by non-ferrous metals: In situ metal immobilization and revegetation
    • Vangronsveld J, Colpaert J, Tichelen VK (1995) Reclamation of a bare industrial area contaminated by non-ferrous metals: in situ metal immobilization and revegetation. Environ Poll 87:51-59
    • (1995) Environ Poll , vol.87 , pp. 51-59
    • Vangronsveld, J.1    Colpaert, J.2    Tichelen, V.K.3
  • 48
    • 0032906465 scopus 로고    scopus 로고
    • In situ, real-timecatabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater
    • Wilson MS, Bakermans C, Madsen EL (1999) In situ, real-timecatabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater. Appl Environ Microb 65:80-87
    • (1999) Appl Environ Microb , vol.65 , pp. 80-87
    • Wilson, M.S.1    Bakermans, C.2    Madsen, E.L.3
  • 49
    • 0029669110 scopus 로고    scopus 로고
    • Assessment of the biodegradation potential of psychrotrophic microorganisms
    • Whyte LG, Greer CW, Inniss WE (1996) Assessment of the biodegradation potential of psychrotrophic microorganisms. Can J Microb 42:99-106
    • (1996) Can J Microb , vol.42 , pp. 99-106
    • Whyte, L.G.1    Greer, C.W.2    Inniss, W.E.3
  • 50
    • 0030805158 scopus 로고    scopus 로고
    • Biodegradation of petroleum hydrocarbons by psychrotrophic Pseudomonas strains possessing both alkane (alk) and naphthalene (nah) catabolic pathways
    • 9
    • Whyte LG, Bourbonnière L, Greer CW (1997) Biodegradation of petroleum hydrocarbons by psychrotrophic Pseudomonas strains possessing both alkane (alk) and naphthalene (nah) catabolic pathways. Appl Environ Microb 63(9):3719-3723
    • (1997) Appl Environ Microb , vol.63 , pp. 3719-3723
    • Whyte, L.G.1    Bourbonnière, L.2    Greer, C.W.3
  • 51
    • 0028981815 scopus 로고
    • Determination of substrate utilisation patterns of soil microbial communities: An approach to assess population changes after hydrocarbon pollution
    • Wünsche L, Brüggemann L, Babel W (1995) Determination of substrate utilisation patterns of soil microbial communities: An approach to assess population changes after hydrocarbon pollution. FEMS Microbiol Ecol 17:295-30
    • (1995) FEMS Microbiol Ecol , vol.17 , pp. 295-30
    • Wünsche, L.1    Brüggemann, L.2    Babel, W.3
  • 52
    • 4444353526 scopus 로고    scopus 로고
    • Biodiverity amongst cultivable polycyclic aromatic hydrocarbon transforming bacteria isolated from an abandoned industrial site
    • Zocca C, De Gregorio S, Visentini F et al (2004) Biodiverity amongst cultivable polycyclic aromatic hydrocarbon transforming bacteria isolated from an abandoned industrial site. FEMS Microbiol Lett 238:375-382
    • (2004) FEMS Microbiol Lett , vol.238 , pp. 375-382
    • Zocca, C.1    De Gregorio, S.2    Visentini, F.3


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