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Volumn 66, Issue 3, 2007, Pages 610-621

A putative house-cleaning enzyme encoded within an integron array: 1.8 Å crystal structure defines a new MazG subtype

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYADENOSINE TRIPHOSPHATE; DEOXYCYTIDINE TRIPHOSPHATE; INORGANIC PYROPHOSPHATASE; MAZG PROTEIN; PARATHION; PROTEIN; UNCLASSIFIED DRUG;

EID: 35448994482     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2007.05932.x     Document Type: Article
Times cited : (16)

References (42)
  • 3
  • 4
    • 34347364443 scopus 로고    scopus 로고
    • Integrons: Mobilizable platforms that promote genetic diversity in bacteria
    • Boucher, Y., Labbatte, M., Koenig, J.E. Stokes, H.W. (2007) Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends Microbiol 15 : 301 307.
    • (2007) Trends Microbiol , vol.15 , pp. 301-307
    • Boucher, Y.1    Labbatte, M.2    Koenig, J.E.3    Stokes, H.W.4
  • 6
    • 0028103275 scopus 로고
    • The CCP4 Suite: Programs for protein crystallography
    • Collaborative Computational Project Number 4 (
    • Collaborative Computational Project Number 4 (1994) The CCP4 Suite: programs for protein crystallography. Acta Crystallogr D 50 : 760 763.
    • (1994) Acta Crystallogr D , vol.50 , pp. 760-763
  • 9
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P. Cowtan, K. (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D 60 : 2126 2132.
    • (2004) Acta Crystallogr D , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 10
    • 0003027568 scopus 로고    scopus 로고
    • Scaling of MAD data
    • In. Wilson, K.S., Davies, G., Ashton, A.W. Bailey, S. (eds). Warrington: CCLRC, Daresbury Laboratory, pp.
    • Evans, P.R. (1997) Scaling of MAD data. In Proceedings of CCP4 Study Weekend on Recent Advances in Phasing. Wilson, K.S., Davies, G., Ashton, A.W. Bailey, S. (eds). Warrington : CCLRC, Daresbury Laboratory, pp. 97 102.
    • (1997) Proceedings of CCP4 Study Weekend on Recent Advances in Phasing. , pp. 97-102
    • Evans, P.R.1
  • 12
    • 33645057206 scopus 로고    scopus 로고
    • MazG - A regulator of programmed cell death in Escherichia coli
    • Gross, M., Marianovsky, I. Glaser, G. (2006) MazG - a regulator of programmed cell death in Escherichia coli. Mol Microbiol 59 : 590 601.
    • (2006) Mol Microbiol , vol.59 , pp. 590-601
    • Gross, M.1    Marianovsky, I.2    Glaser, G.3
  • 13
    • 0027130853 scopus 로고
    • Integrons: Novel DNA elements which capture genes by site-specific recombination
    • Hall, R.M. Stokes, H.W. (1993) Integrons: novel DNA elements which capture genes by site-specific recombination. Genetica 90 : 115 132.
    • (1993) Genetica , vol.90 , pp. 115-132
    • Hall, R.M.1    Stokes, H.W.2
  • 16
    • 0030921594 scopus 로고    scopus 로고
    • A database for post-genome analysis
    • Kanehisa, M. (1997) A database for post-genome analysis. Trends Genet 13 : 375 376.
    • (1997) Trends Genet , vol.13 , pp. 375-376
    • Kanehisa, M.1
  • 17
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • Katoh, K., Kuma, K., Toh, H. Miyata, T. (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33 : 511 518.
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 18
    • 0000127585 scopus 로고
    • Automated refinement of protein models
    • Lamzin, V.S. Wilson, K.S. (1993) Automated refinement of protein models. Acta Crystallogr D 49 : 129 149.
    • (1993) Acta Crystallogr D , vol.49 , pp. 129-149
    • Lamzin, V.S.1    Wilson, K.S.2
  • 19
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S. Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 26 : 283 291.
    • (1993) J Appl Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 22
    • 30744470374 scopus 로고    scopus 로고
    • The Nudix hydrolase superfamily
    • McLennan, A.G. (2006) The Nudix hydrolase superfamily. Cell Mol Life Sci 63 : 123 143.
    • (2006) Cell Mol Life Sci , vol.63 , pp. 123-143
    • McLennan, A.G.1
  • 23
    • 33747183094 scopus 로고    scopus 로고
    • Integrons: Agents of bacterial evolution
    • Mazel, D. (2006) Integrons: agents of bacterial evolution. Nat Rev Microbiol 4 : 608 620.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 608-620
    • Mazel, D.1
  • 24
    • 4444321494 scopus 로고    scopus 로고
    • The crystal structure of a complex of Campylobacter jejuni dUTPase with substrate analogue sheds light on the mechanism and suggests the 'basic module' for dimeric d(C/U) TPases
    • Moroz, O.V., Harkiolaki, M., Galperin, M.Y., Vagin, A.A., Gonzalez-Pacanowska, D. Wilson, K.S. (2004) The crystal structure of a complex of Campylobacter jejuni dUTPase with substrate analogue sheds light on the mechanism and suggests the 'basic module' for dimeric d(C/U) TPases. J Mol Biol 342 : 1583 1597.
    • (2004) J Mol Biol , vol.342 , pp. 1583-1597
    • Moroz, O.V.1    Harkiolaki, M.2    Galperin, M.Y.3    Vagin, A.A.4    Gonzalez-Pacanowska, D.5    Wilson, K.S.6
  • 25
    • 14644444463 scopus 로고    scopus 로고
    • Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential 'house-cleaning' functions
    • Moroz, O.V., Murzin, A.G., Makarova, K.S., Koonin, E.V., Wilson, K.S. Galperin, M.Y. (2005) Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential 'house-cleaning' functions. J Mol Biol 347 : 243 255.
    • (2005) J Mol Biol , vol.347 , pp. 243-255
    • Moroz, O.V.1    Murzin, A.G.2    Makarova, K.S.3    Koonin, E.V.4    Wilson, K.S.5    Galperin, M.Y.6
  • 26
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov, G.N., Vagin, A.A. Dodson, E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53 : 240 253.
    • (1997) Acta Crystallogr D , vol.53 , pp. 240-253
    • Murshudov, G.N.1    Vagin, A.A.2    Dodson, E.J.3
  • 27
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G. Groisman, E.A. (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405 : 299 304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 28
    • 0242354974 scopus 로고    scopus 로고
    • Horizontal gene transfer and phylogenetics
    • Philippe, H. Douady, C.J. (2003) Horizontal gene transfer and phylogenetics. Curr Opin Microbiol 6 : 498 505.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 498-505
    • Philippe, H.1    Douady, C.J.2
  • 29
    • 0029567996 scopus 로고
    • Gene cassettes: A new class of mobile element
    • Recchia, G.D. Hall, R.M. (1995) Gene cassettes: a new class of mobile element. Microbiology 141 : 3015 3027.
    • (1995) Microbiology , vol.141 , pp. 3015-3027
    • Recchia, G.D.1    Hall, R.M.2
  • 30
    • 0037350819 scopus 로고    scopus 로고
    • Comparative analysis of superintegrons: Engineering extensive genetic diversity in the Vibrionaceae
    • Rowe-Magnus, D.A., Guerout, A.M., Biskri, L., Bouige, P. Mazel, D. (2003) Comparative analysis of superintegrons: engineering extensive genetic diversity in the Vibrionaceae. Genome Res 13 : 428 442.
    • (2003) Genome Res , vol.13 , pp. 428-442
    • Rowe-Magnus, D.A.1    Guerout, A.M.2    Biskri, L.3    Bouige, P.4    Mazel, D.5
  • 32
    • 0024805974 scopus 로고
    • A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: Integrons
    • Stokes, H.W. Hall, R.M. (1989) A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons. Mol Microbiol 3 : 1669 1683.
    • (1989) Mol Microbiol , vol.3 , pp. 1669-1683
    • Stokes, H.W.1    Hall, R.M.2
  • 34
    • 14844294424 scopus 로고    scopus 로고
    • Protein production by auto-induction in high density shaking cultures
    • Studier, F.W. (2005) Protein production by auto-induction in high density shaking cultures. Protein Expr Purif 41 : 207 234.
    • (2005) Protein Expr Purif , vol.41 , pp. 207-234
    • Studier, F.W.1
  • 36
    • 0034517589 scopus 로고    scopus 로고
    • An approach to multi-copy search in molecular replacement
    • Vagin, A. Teplyakov, A. (2000) An approach to multi-copy search in molecular replacement. Acta Crystallogr D 56 : 1622 1624.
    • (2000) Acta Crystallogr D , vol.56 , pp. 1622-1624
    • Vagin, A.1    Teplyakov, A.2
  • 37
    • 35448993214 scopus 로고    scopus 로고
    • Crystal structure of the putative pyrophosphatase YpjD from Bacillus subtilis. PDB: 2GTA, doi: 10.2210/pdb2gta/pdb
    • Vorobiev, S.M., Zhou, W., Seetharaman, J., Wang, D., Ma, L.C., Acton, T., et al. (2006) Crystal structure of the putative pyrophosphatase YpjD from Bacillus subtilis. PDB: 2GTA, doi: 10.2210/pdb2gta/pdb
    • (2006)
    • Vorobiev, S.M.1    Zhou, W.2    Seetharaman, J.3    Wang, D.4    Ma, L.C.5    Acton, T.6
  • 39
    • 33947218885 scopus 로고    scopus 로고
    • Crystal structure of RS21-C6, involved in nucleoside triphosphate pyrophosphohydrolysis
    • Wu, B., Liu, Y., Zhao, Q., Liao, S., Zhang, J., Bartlam, M., et al. (2007) Crystal structure of RS21-C6, involved in nucleoside triphosphate pyrophosphohydrolysis. J Mol Biol 367 : 1405 1412.
    • (2007) J Mol Biol , vol.367 , pp. 1405-1412
    • Wu, B.1    Liu, Y.2    Zhao, Q.3    Liao, S.4    Zhang, J.5    Bartlam, M.6
  • 41
    • 0036776766 scopus 로고    scopus 로고
    • MazG, a nucleoside triphosphate pyrophosphohydrolase, interacts with Era, an essential GTPase in Escherichia coli
    • Zhang, J. Inouye, M. (2002) MazG, a nucleoside triphosphate pyrophosphohydrolase, interacts with Era, an essential GTPase in Escherichia coli. J Bacteriol 184 : 5323 5329.
    • (2002) J Bacteriol , vol.184 , pp. 5323-5329
    • Zhang, J.1    Inouye, M.2
  • 42
    • 0037485102 scopus 로고    scopus 로고
    • Thermotoga maritima MazG protein has both nucleoside triphosphate pyrophosphohydrolase and pyrophosphatase activities
    • Zhang, J., Zhang, Y. Inouye, M. (2003) Thermotoga maritima MazG protein has both nucleoside triphosphate pyrophosphohydrolase and pyrophosphatase activities. J Biol Chem 278 : 21408 21414.
    • (2003) J Biol Chem , vol.278 , pp. 21408-21414
    • Zhang, J.1    Zhang, Y.2    Inouye, M.3


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