Phylogenetic analysis of spring virema of carp virus reveals distinct subgroups with common origins for recent isolates in North America and the UK

Diseases of Aquatic Organisms

Volumn 76, Issue 3, 2007, Pages 193-204

  Miller, O ^a,b   Fuller, F J ^a   Gebreyes, W A ^a   Lewbart, G A ^a   Shchelkunov, I S ^c   Shivappa, R B ^a   Joiner, C ^d   Woolford, G ^d   Stone, D M ^d   Dixon, P F ^d   Raley, M E ^a   Levine, J F ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b UNITED STATES DEPARTMENT OF AGRICULTURE   (United States)

^c All Russia Scientific Research Institute of Fish Economy and Oceanography   (Russian Federation)

^d CENTRE FOR ENVIRONMENT   (United Kingdom)

Author keywords

Glycoprotein gene; Molecular epidemiology; Phosphoprotein gene; Phylogenetic analysis; Spring viremia of carp; SVCV

Indexed keywords

CYPRINID; EPIDEMIOLOGY; GENE; ISOLATED POPULATION; MOLECULAR ANALYSIS; PHYLOGENETICS; PROTEIN; VIRUS;

ASIA; CHINA; EURASIA; EUROPE; FAR EAST; GREAT LAKES [NORTH AMERICA]; ILLINOIS; LAKE ONTARIO; MISSOURI; NORTH AMERICA; NORTH CAROLINA; UNITED KINGDOM; UNITED STATES; WASHINGTON [UNITED STATES]; WESTERN EUROPE; WISCONSIN;

CYPRINIDAE; SPRING VIREMIA OF CARP VIRUS;

GLYCOPROTEIN; PHOSPHOPROTEIN; VIRUS RNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; CARP; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FISH DISEASE; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NORTH AMERICA; NUCLEOTIDE SEQUENCE; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHABDOVIRUS; SEQUENCE ALIGNMENT; UNITED KINGDOM; VIROLOGY; VIRUS INFECTION;

ANIMALS; BASE SEQUENCE; CARPS; FISH DISEASES; GLYCOPROTEINS; GREAT BRITAIN; MOLECULAR SEQUENCE DATA; NORTH AMERICA; PHOSPHOPROTEINS; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RHABDOVIRIDAE; RHABDOVIRIDAE INFECTIONS; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

EID: 35448991334     PISSN: 01775103     EISSN: 16161580     Source Type: Journal    
DOI: 10.3354/dao076193     Document Type: Article

References (37)

1. Ahne W, Bjorklund HV, Essbauer S, Fijan N, Kurath G, Winton JR (2002) Spring viremia of carp. Dis Aquat Org 52:261-272
2. Banerjee AK (1987) Transcription and replication of rhabdoviruses. Microbiol Rev 51:66-87
3. Bjorklund HV, Higman KH, Kurath G (1996) The glycoprotein genes and gene junctions of the fish rhabdoviruses spring viremia of carp virus and hirame rhabdovirus: analysis of relationships with other rhabdoviruses. Virus Res 42: 65-80
4. Bondad-Reantaso MG, Subasinghe RP, Arthur JR, Ogawa K, Chinabut S, Adlard R, Tan Z, Shariff M (2005) Disease and health management in Asian aquaculture. Vet Parasitol 132:249-272
5. Dikkeboom A, Radi C, Toohey-Kurth K, Marcquenski S and 5 others (2004) First report of spring viremia of carp virus in wild common carp in North America. J Aquat Anim Health 16:169-178
6. Emerson SU, Yu Y (1975) Both NS and L proteins are required for in vitro RNA synthesis by vesicular stomatitis virus. J Virol 15:1348-1356
7. Federal Register (2006) Rules and regulations, 9 CFR Part 93 71:51429-51437 available at: http://frwebgate.access.gpo.gov/cgi-bin/getpage. cgi?dbname=2006_register&position=all&page=51429
8. Fijan N (1999) Spring viremia of carp and other viral diseases and agents of warmwater fish. In: Woo PTK (ed) Fish diseases and disorders, Vol 3. CAB International, London, p 177-244
9. Fijan N, Petrinec Z, Sulimanovic D, Zwillenberg LO (1971) Isolation of the viral causative agent from the acute form of infectious dropsy of carp. Veterinarski Archiv 41:125-138
10. Goodwin A (2002) First report of spring viremia of carp virus in North America. J Aquat Anim Health 4:161-164
11. Gu X, Fu YX, Li WH (1995). Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol Biol Evol 12:546-557
12. Hall BG, Barlow M (2006) Phylogenetic analysis as a tool in molecular epidemiology of infectious diseases. Ann Epidemiol 16:157-169
13. Hoffmann B, Schutze H, Mettenleiter TC (2002) Determination of the complete genomic sequence and analysis of the gene products of the virus of spring viremia of carp, a fish rhabdovirus. Virus Res 84:89-100
14. Hoffmann B, Beer M, Schutze H, Mettenleiter TC (2005) Fish rhabdoviruses: molecular epidemiology and evolution. Curr Top Microbiol Immunol 292:81-117
15. Johansson T, Nylund S, Olesen NJ, Bjorklund H (2001) Molecular characterisation of the nucleocapsid protein gene, glycoprotein gene and gene junctions of rhabdovirus 903/87, a novel fish pathogenic rhabdovirus. Virus Res 80:11-22
16. Johansson T, Osttman-Myllyoja L, Hellstrom A, Martelius S, Olesen N J, Bjorklund H (2002) A novel fish rhabdovirus from Sweden is closely related to the Finnish rhabdovirus 903/87. Virus Genes 25:127-138
17. Johnson MC, Maxwell JM, Loh PC, Leong JA (1999) Molecular characterization of the glycoproteins from two warm water rhabdoviruses: snakehead rhabdovirus and rhabdovirus of penaeid shrimp (RPS)/spring viremia of carp virus. Virus Res 64:95-106
18. Koutna M, Vesely T, Psikal I, Hulova J (2003) Identification of spring viraemia of carp virus by combined RT-PCR and nested PCR. Dis Aquat Org 55:229-235
19. Kumar S, Tamura K, Nei M (2004) Mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
20. Liu H, Gao L, Shi X, Gu T, Jiang Y, Chen H (2004) Isolation of spring viraemia of carp virus from cultured koi (Cyprinus carpio koi) and common carp (Cyprinus carpio carpio) in P.R. China. Bull Eur Assoc Fish Pathol 24:194-202
21. Liu H, Feng F, Huang J, Shi X, Gao L, Yang J, Jiang Y (2005) Amino acid sequence of a Chinese isolate of Spring Viraemia Virus of carp and preliminary analysis of the glycoprotein gene. Virol Sin 20:647-651
22. Nylander JA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. Available at: www.abc.se/∼nylander
23. Oreshkova SF, Shchelkunov IS, Tikunova NV, Shchelkunova TI, Puzyrev AT, Ilyichev AA (1999) Detection of spring viremia of carp virus isolates by hybridization with non-radioactive probes and amplification by polymerase chain reaction. Virus Res 63:3-10
24. Ostroff SM (1999) Emerging infectious diseases 1997-1998: the role of molecular epidemiology. Mem Inst Oswaldo Cruz 94:1-3
25. Page R (1996) Treeview: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12:357-358
26. Roy P (1981) Phosphoproteins of spring viremia of carp virus. Virology 112:274-281
27. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
28. Shchelkunov IS, Oreshkova SF, Popova AG, Nikolenko GN, Shchelkunova TI, Ilyichev AA (2005). Development of PCR-based techniques for routine detection and grouping of spring viremia of carp virus. In: Cipriano RC, Shchelkunov IS, Faisal M (eds) Health and diseases of aquatic organisms: bilateral perspectives. Michigan State University Press, East Lansing, p 260-284
29. Stone DM, Ahne W, Denham KL, Dixon PF, Liu CT, Sheppard AM, Taylor GR, Way K (2003) Nucleotide sequence analysis of the glycoprotein gene of putative spring viraemia of carp virus and pike fry rhabdovirus isolates reveals four genogroups. Dis Aquat Org 53:203-210
30. Strommen HK, Stone DM (1997) Detection of viral haemorrhagic septicaemia (VHS) virus in fish tissues by semi-nested polymerase chain reaction (PCR). In: Barnes A, Davidson G, Hiney M, McIntosh D (eds) Proceedings of a symposium on methodology in fish disease research. Fisheries Research Services, Aberdeen, p 203-209
31. Swofford DL (2000) Paup*:phylogenetic analysis using parismony (*and other methods), Version 4. Sinauer Associates, Sunderland, MA
32. Swofford DL, Olsen GJ, Waddell PJ, Hillis DM (1996) Phylogenetic inference. In: Hillis DM, Moritz C, Mable BK (eds) Molecular systematica. Sinauer Associates, Sunderland, MA, p 407-514
33. Teng Y, Liu H, Lv JQ, Fan WH, Zhang QY, Qin QW (2007) Characterization of the complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China. Arch Virol (in press). Available at: www.springerlink.com/content/t76114qr872t7066
34. Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgs D (1997) The clustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
35. Warg J, Dikkeboom AL, Goodwin AE, Snekvik K, Whitney J (2007) Comparison of multiple genes of spring viremia of carp viruses isolated in the United States. Virus Genes (in press). Available at: www.springerlink.com/content/ j133141v872nrm58/?p=b8961663dde342ce858c6fddbcb028d6&pi=1
36. Wolf K (1988) Fish viruses and fish viral diseases. Cornell University Press, Ithaca, NY
37. Zhang Q (2002) A review of viral diseases of aquatic animals in China. Acta Hydrobiol Sin 26:89-101