Monitoring microbial community in a subsurface soil contaminated with hydrocarbons by quinone profile

Chemosphere

Volumn 59, Issue 3, 2005, Pages 305-314

  Song, Dejun ^a,b   Katayama, Arata ^b  

^a KISO JIBAN CONSULTANTS CO LTD   (Japan)

^b NAGOYA UNIVERSITY   (Japan)

Author keywords

Biomarkers; Hydrocarbon contaminated soil; In situ microbial community; Isoprenoid quinones; Lysimeter experiment

Indexed keywords

ATTENUATION; BACTERIA; BIOMASS; CONTAMINATION; HYDROCARBONS; KETONES; MONITORING; RESIDUAL FUELS;

MICROBIAL COMMUNITY; QUINONE PROFILE ANALYSIS; SUBSURFACE SOIL CONTAMINATION; TOTAL QUINONES (TQ);

SOILS;

BIOLOGICAL MARKER; CYTOSINE; GUANINE; HYDROCARBON; MENAQUINONE; QUINONE DERIVATIVE; UBIQUINONE;

BIOMARKER; HYDROCARBON; MICROBIAL COMMUNITY; NATURAL ATTENUATION; SOIL POLLUTION;

ARTICLE; CHEMICAL COMPOSITION; CONTROLLED STUDY; ENVIRONMENTAL MONITORING; FUNGUS; GRAM POSITIVE BACTERIUM; LYSIMETRY; MICROBIAL BIOMASS; MICROFLORA; NONHUMAN; PROTEOBACTERIA; SOIL POLLUTION; TAXONOMY;

EID: 14844304375     PISSN: 00456535     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemosphere.2004.10.053     Document Type: Article

References (24)

1. R.M. Atlas, and M.C. Atlas Biodegradation of oil and bioremediation of oil spills Curr. Opin. Biotechnol. 2 1991 440 443
2. M.T. Balba, N. Al-Awadhi, and R. Al-Daher Bioremediation of oil-contaminated soil: microbiological methods for feasibility assessment and field evaluation J. Microbiol. Meth. 32 1998 155 164
3. B.A. Bekins, I.M. Cozzarelli, E.M. Godsy, E. Warren, H.I. Essaid, and M.E. Tuccillo Progression of natural attenuation process at a crude oil spill site: II. Controls on spatial distribution of microbial populations J. Contam. Hydrol. 53 2001 387 406
4. H.R. Beller, S.R. Kane, T.C. Legler, and P.J.J. Alvarez A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene Environ. Sci. Technol. 36 2002 3977 3984
5. I.D. Bossert, L.M. Shor, and D.S. Kosson Method for measuring hydrocarbon biodegradation in soils C.J. Hurst R.L. Crawford G.R. Knudsen M.J. McInerney L.D. Stetzenbach Manual of Environmental Microbiology 2002 ASM Press Washinton, DC 934 943
6. J.G. Bundy, G.I. Paton, and C.D. Campbell Microbial communities in different soil types do not converge after diesel contamination J. Appl. Microbiol. 92 2002 276 288
7. P.D. Franzmann, W.J. Robobertson, L.R. Zappia, and G.B. Davis The role of microbial populations in the containment of aromatic hydrocarbons in the subsurface Biodegradation 13 2002 65 78
8. K. Fujie, H.Y. Hu, H. Tanaka, K. Urano, K. Saitou, and A. Katayama Analysis of respiratory quinones in soil for characterization of microbiota Soil Sci. Plant Nutr. 44 1998 393 404
9. J.R. Haines, R. Herrmann, K. Lee, S. Cobanli, and C. Blaise Microbial population analysis as a measure of ecosystem restoration Bioremediation J. 6 2002 283 296
10. M.A. Heitkamp, and C.E. Cerniglia Mineralization of polycyclic aromatic hydrocarbons by a bacterium isolated from sediment below an oil field Appl. Environ. Microbiol. 54 1988 1612 1614
11. A. Hiraishi, Y. Morishima, and J. Takeuchi Numerical analysis of lipoquinone patterns in monitoring bacterial community dynamics in wastewater treatment systems J. Gen. Appl. Microbiol. 37 1991 57 70
12. A. Hiraishi Isoprenoid quinones as biomarkers of microbial populations in the environment J. Biosci. Bioeng. 88 1999 449 460
13. H.Y. Hu, K. Fujie, K. Nakagome, and A. Katayama Quantitative analysis of microfloral changes in a bioreactor for waste water treatment using novel indices of diversity and equitability of respiratory quinones Water Res. 33 1999 3263 3270
14. Japanese Geotechnical Society, 2000. Japanese Geotechnical standard on method for determination of physical and chemical property of soil, JGS 0111, JGS 0121, JGS 0191, JGS 0211 and JGS 0231
15. Katayama, A., Fujie, K., 2000. Characterization of soil microbiota with quinone profile. In: Bollag, J.M., Stotzky, G. (Eds.), Soil Biochemistry, vol. 10. Marcel Dekker, New York, pp. 303-347
16. A. Katayama, K. Funasaka, and K. Fujie Changes in the respiratory quinone profile of a soil treated with pesticides Biol. Fertil. Soils 33 2001 454 459
17. A. Katayama, H.Y. Hu, M. Nozawa, S. Takahashi, and K. Fujie Changes in microbial community structure in soils incorporated with the mixture of glucose and peptone with reference to respiratory quinone profile Soil Sci. Plant Nutr. 48 2002 841 846
18. A. Kroger Determination of contents and redox states of ubiquinone and menaquinone Method Enzymol. 53 1978 579 591
19. E. Lang Diversity of bacterial capabilities in utilizing alkylated benzenes and other aromatic compounds Appl. Microbiol. 23 1996 257 260
20. G.J. Leahy, and R.R. Colwell Microbial degradation of hydrocarbons in the environment Microbiol. Rev. 54 3 1990 305 315
21. S.J. Macnaughton, J.R. Stephen, A.D. Venosa, G.A. Davis, Y.J. Chang, and D.C. White Microbial population changes during bioremediation of an experimental oil spill Appl. Environ. Microbiol. 65 1999 3566 3574
22. E. Riser-Roberts Remediation of Petroleum Contaminated Soils: Biological, Physical and Chemical Processes 1998 Lewis Publishers Boca Raton
23. K. Saitou, K. Nagasaki, H. Yamakawa, H.Y. Hu, K. Fujie, and A. Katayama Linear relation between the amount of respiratory quinones and the microbial biomass in soil Soil Sci. Plant Nutr. 45 1999 775 778
24. J.C. Tang, Y. Inoue, T. Yasuta, S. Yoshida, and A. Katayama The chemical and microbial properties of various compost products Soil Sci. Plant Nutr. 49 2003 273 280