ESTs from the basidiomycete Schizophyllum commune grown on nitrogen-replete and nitrogen-limited media

Fungal Genetics and Biology

Volumn 39, Issue 2, 2003, Pages 191-198

  Guettler, S ^a,b   Jackson, E N ^a,c   Lucchese, S A ^a,d   Honaas, L ^a   Green, A ^a   Hittinger, C T ^a,e   Tian, Y ^a   Lilly, W W ^a   Gathman, A C ^a  

^a SE MO Stt Univ Biology Department ^*  (United States)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d University of Missouri   (United States)

^e UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Basidiomycetes; EST; Nitrogen limitation

Indexed keywords

GENE PRODUCT; MESSENGER RNA; NITROGEN;

ARTICLE; BACTERIOPHAGE LAMBDA; BASIDIOMYCETES; CELL CYCLE; CULTURE MEDIUM; DNA LIBRARY; EXPRESSED SEQUENCE TAG; FUNGUS GROWTH; GENBANK; GENE CONSTRUCT; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC DATABASE; GENOME; MOLECULAR CLONING; NITROGEN CONCENTRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHANEROCHAETE; PRIORITY JOURNAL; PROTEIN SYNTHESIS; SCHIZOPHYLLUM COMMUNE; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE;

BASIDIOMYCOTA; CHRYSOSPORIUM; PHANEROCHAETE; PHANEROCHAETE CHRYSOSPORIUM; SCHIZOPHYLLUM; SCHIZOPHYLLUM COMMUNE;

EID: 0038054379     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1087-1845(03)00017-3     Document Type: Article

References (36)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
2. Anderson M.R., Deppe C.S. Control of fungal development. I. The effects of two regulatory genes on growth in Schizophyllum commune. Dev. Biol. 53:1976;21-29.
3. Beck T., Hall M.N. The TOR signaling pathway controls nuclear localization of nutrient regulated transcription factors. Nature. 402:1999;689-692.
4. Bilbrey R.E., Penheiter A.R., Gathman A.C., Lilly W.W. Characterization of a novel phenylalanine-specific aminopeptidase from the basidiomycete, Schizophyllum commune. Mycol. Res. 100:1996;462-466.
5. Boddy L., Watkinson S.C. Wood decomposition, higher fungi, and their role in nutrient redistribution. Can. J. Bot. 73:1995;s1377-s1383.
6. Carlile M.J., Watkinson S.C. The Fungi. 1994;Academic Press, London.
7. Casselton L.A., Kües U. Mating type genes in homobasidiomycetes. Wessels J.G.H., Meinhardt F. The Mycota I: Growth, Differentiation, and Sexuality. 1994;Springer, Berlin.
8. Cooke R.C., Rayner A.D.M. Ecology of saprotrophic fungi. 1984;Longman, Essex, UK.
9. DOE Joint Genome Institute. 2002. Draft Phanerochaete chrysosporium genome sequence data. http://www.jgi.doe.gov/programs/whiterot.htm.
10. EBI (European Bioinformatics Institute), 2002. What is GO Slim? http://www.ebi.ac.uk/proteome/goslim_terms.html.
11. Fowler T.J., DeSimone S.M., Mitton M.F., Kurjan J., Raper C.A. Multiple sex pheromones and receptors of a mushroom-producing fungus elicit mating in yeast. Mol. Biol. Cell. 10:1999;2559-2572.
12. Gasch A.P., Werner-Washburne M. The genomics of yeast responses to environmental stress and starvation. Funct. Integrative Genomics. 2:2002;181-192.
13. Gene Ontology Consortium, 2000. Gene ontology: tool for the unification of biology. Nat. Genet. 25, 25-29.
14. Haltrich D., Preiss M., Steinter W. Optimization of a culture medium for increased xylanase production by a wild strain of Schizophyllum commune. Enzyme Microbiol. Technol. 15:1993;854-860.
15. Jennings D.H. The Physiology of Fungal Nutrition. 1995;Cambridge University Press, Cambridge.
16. Johnston J.M., Ramos E.R., Bilbrey R.E., Gathman A.C., Lilly W.W. Characterization of ScPrI, a chymotrypsin-like protease from mycelia of Schizophyllum commune. Mycol. Res. 104:2000;726-731.
17. Kersten M.A.S.H., Muller Y., Op Den Camp H.J.M., Vogels G.D., Van Griensven L.J.L.D., Visser J., Schaap P.J. Molecular characterization of the glnA gene encoding glutamine synthetase from the edible mushroom Agaricus bisporus. Mol. Gen. Genet. 256:1997;179-186.
18. Lacaz C.da.S., Heins-Vaccari E.M., De Melo N.T., Hernandez-Arriagada G.L. Basidiomycosis: a review of the literature. Inst. Med. Trop. Sao Paulo. 38:1996;379-390.
19. Lee S.H., Kim B.G., Kim K.J., Lee J.S., Yun D.W., Hahn J.H., Kim G.H., Lee K.H., Suh D.S., Kwon S.T., Lee C.S., Yoo Y.B. Comparative analysis of sequences expressed during the liquid-cultured mycelia and fruit body stages of Pleurotus ostreatus. Fungal Genet. Biol. 35:2002;115-134.
20. Levi M.P., Cowling E.B. Role of nitrogen in wood deterioration VII. Physiological adaptation of wood-destroying and other fungi to substrates deficient in nitrogen. Phyotopathology. 59:1969;460-468.
21. Lilly W.W., Bilbrey R.E., Williams B.L., Loos L.S., Venable D.F. Partial characterization of the cellular proteolytic system of Schizophyllum commune. Mycologia. 86:1994;564-570.
22. Lilly W.W., Wallweber G.J., Higgins S.M. Proteolysis and amino acid recycling during nitrogen deprivation in Schizophyllum commune. Curr. Microbiol. 23:1991;27-32.
23. Marzluf G.A. Regulation of sulfur and nitrogen metabolism in filamentous fungi. Ann. Rev. Microbiol. 47:1993;31-55.
24. Merrill W., Cowling E.B. Role of nitrogen in wood deterioration: amount and distribution of nitrogen in tree stems. Can. J. Bot. 44:1966;1555-1579.
25. NCBI (National Center for Biotechnology Information), 2002. http://www.ncbi.nlm.nih.gov/.
26. 14C -AIB) translocation in intact basidiomycete mycelia FEMS Microbiol. Ecol. 26:1998;109-120.
27. Ospina-Giraldo M.D., Collopy P.D., Romaine C.P., Royse D.J. Classification of sequences expressed during the primordial and basidiome stages of the cultivated mushroom Agaricus bisporus. Fungal Genet. Biol. 29:2000;81-94.
28. Park D. Carbon and nitrogen levels as factors influencing fungal decomposers. Anderson J.M., Macfayden A. The Role of Terrestrial and Aquatic Organisms in Decomposition Processes. 1976;Blackwell, Oxford.
29. Rolfes R.J., Hinnebusch A.G. Translation of the yeast transcriptional activator GCN4 is stimulated by purine limitation: implications for activation of the protein kinase GCN2. Mol. Cell. Biol. 13:1993;5011-5099.
30. + -dependent glutamate dehydrogenase (gdhA) from Agaricus bisporus Mol. Gen. Genet. 250:1996;339-347.
31. Sessoms D.B., Lilly W.W. Derepressible proteolytic activity in homokaryotic hyphae of Schizophyllum commune. Exp. Mycol. 10:1986;294-300.
32. Sigler L., Bartley J.R., Parr D.H., Morris A.J. Maxillary sinusitis caused by medusoid form of Schizophyllum commune. J. Clin. Microbiol. 37:1999;3395-3398.
33. ter Schure E.G., van Riel N., Verrips C.T. The role of ammonia metabolism in nitrogen catabolite repression in Saccharomyces cerevisiae. FEMS Microbiol. Rev. 24:2000;67-83.
34. Walker, D.R., Koonin, E.V., 1997. SEALS: A system for easy analysis of lots of sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5, 333-339 ( http://www.ncbi.nlm.nih.gov/CBBresearch/Walker/SEALS/ ).
35. Wessels J. Fruiting in the higher fungi. Advances in Microbial Physiology. 34:1993;147-202.
36. Wessels J., Vries O., Asgeirsdottir S., Schuren F. Hydrophobin genes involved in formation of aerial hyphae and fruit bodies in Schizophyllum commune. Plant Cell. 3:1991;793-799.