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Volumn 11, Issue 8, 2004, Pages 784-790

Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOBUTANE; DIMER; DNA POLYMERASE; NUCLEOTIDE; PYRIMIDINE; THYMINE;

EID: 3543002207     PISSN: 15459993     EISSN: None     Source Type: Journal    
DOI: 10.1038/nsmb792     Document Type: Article
Times cited : (63)

References (40)
  • 2
    • 0002622056 scopus 로고
    • Unraveling the molecular pathway from sunlight to skin cancer
    • Taylor, J.S. Unraveling the molecular pathway from sunlight to skin cancer. Acc. Chem. Res. 27, 76-82 (1994).
    • (1994) Acc. Chem. Res. , vol.27 , pp. 76-82
    • Taylor, J.S.1
  • 3
    • 0035472817 scopus 로고    scopus 로고
    • Direct and indirect effects of UV radiation on DNA and its components
    • Ravanat, J.L., Douki, T. & Cadet, J. Direct and indirect effects of UV radiation on DNA and its components. J. Photochem. Photobiol. B 63, 88-102 (2001).
    • (2001) J. Photochem. Photobiol. B , vol.63 , pp. 88-102
    • Ravanat, J.L.1    Douki, T.2    Cadet, J.3
  • 4
    • 0034595010 scopus 로고    scopus 로고
    • The importance of repairing stalled replication forks
    • Cox, M.M. et al. The importance of repairing stalled replication forks. Nature 404, 37-41 (2000).
    • (2000) Nature , vol.404 , pp. 37-41
    • Cox, M.M.1
  • 5
    • 0032535528 scopus 로고    scopus 로고
    • Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: Structural basis for nucleotide incorporation
    • Li, Y., Korolev, S. & Waksman, G. Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J. 17, 7514-7525 (1998).
    • (1998) EMBO J. , vol.17 , pp. 7514-7525
    • Li, Y.1    Korolev, S.2    Waksman, G.3
  • 6
    • 0033581011 scopus 로고    scopus 로고
    • DNA polymerases: Structural diversity and common mechanisms
    • Steitz, T.A. DNA polymerases: structural diversity and common mechanisms. J. Biol. Chem. 274, 17395-17398 (1999).
    • (1999) J. Biol. Chem. , vol.274 , pp. 17395-17398
    • Steitz, T.A.1
  • 7
    • 0037566670 scopus 로고    scopus 로고
    • Structural insights into the origins of DNA polymerase fidelity
    • Beard, W.A. & Wilson, S.H. Structural insights into the origins of DNA polymerase fidelity. Structure 11, 489-496 (2003).
    • (2003) Structure , vol.11 , pp. 489-496
    • Beard, W.A.1    Wilson, S.H.2
  • 9
    • 0030924437 scopus 로고    scopus 로고
    • Hydrogen bonding revisited: Geometric selection as a principal determinant of DNA replication fidelity
    • Goodman, M.F. Hydrogen bonding revisited: geometric selection as a principal determinant of DNA replication fidelity. Proc. Natl. Acad. Sci. USA 94, 10493-10495 (1997).
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10493-10495
    • Goodman, M.F.1
  • 10
    • 0034727644 scopus 로고    scopus 로고
    • Pyrene nucleotide as a mechanistic probe: Evidence for a transient abasic site-like intermediate in the bypass of dipyrimidine photoproducts by T7 DNA polymerase
    • Sun, L., Wang, M., Kool, E.T. & Taylor, J.S. Pyrene nucleotide as a mechanistic probe: evidence for a transient abasic site-like intermediate in the bypass of dipyrimidine photoproducts by T7 DNA polymerase. Biochemistry 39, 14603-14610 (2000).
    • (2000) Biochemistry , vol.39 , pp. 14603-14610
    • Sun, L.1    Wang, M.2    Kool, E.T.3    Taylor, J.S.4
  • 11
    • 0032555563 scopus 로고    scopus 로고
    • The ability of a variety of polymerases to synthesize past site-specific cis-syn, trans-syn-II (6-4), and Dewar photoproducts of thymidylyl- (3′→5′)-thymidine
    • Smith, C.A., Baeten, J. & Taylor, J.S. The ability of a variety of polymerases to synthesize past site-specific cis-syn, trans-syn-II (6-4), and Dewar photoproducts of thymidylyl-(3′→5′)-thymidine. J. Biol. Chem. 273, 21933-21940 (1998).
    • (1998) J. Biol. Chem. , vol.273 , pp. 21933-21940
    • Smith, C.A.1    Baeten, J.2    Taylor, J.S.3
  • 12
    • 0037196080 scopus 로고    scopus 로고
    • New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions
    • Taylor, J.S. New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions. Mutat. Res. 510, 55-70 (2002).
    • (2002) Mutat. Res. , vol.510 , pp. 55-70
    • Taylor, J.S.1
  • 13
    • 0034720286 scopus 로고    scopus 로고
    • Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis
    • Tang, M. et al. Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature 404, 1014-1018 (2000).
    • (2000) Nature , vol.404 , pp. 1014-1018
    • Tang, M.1
  • 14
    • 0142123120 scopus 로고    scopus 로고
    • Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase η
    • Washington, M.T., Prakash, L. & Prakash, S. Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase η. Proc. Natl. Acad. Sci. USA 100, 12093-12098 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12093-12098
    • Washington, M.T.1    Prakash, L.2    Prakash, S.3
  • 15
    • 0034802563 scopus 로고    scopus 로고
    • DNA lesion bypass polymerases open up
    • Beard, W.A. & Wilson, S.H. DNA lesion bypass polymerases open up. Structure 9, 759-764 (2001).
    • (2001) Structure , vol.9 , pp. 759-764
    • Beard, W.A.1    Wilson, S.H.2
  • 16
    • 0035812844 scopus 로고    scopus 로고
    • Error-prone DNA polymerases: Novel structures and the benefits of infidelity
    • Friedberg, E.C., Fischhaber, P.L. & Kisker, C. Error-prone DNA polymerases: novel structures and the benefits of infidelity. Cell 107, 9-12 (2001).
    • (2001) Cell , vol.107 , pp. 9-12
    • Friedberg, E.C.1    Fischhaber, P.L.2    Kisker, C.3
  • 17
    • 0037310493 scopus 로고    scopus 로고
    • Damage repair DNA polymerases Y
    • Yang, W. Damage repair DNA polymerases Y. Cur. Curr. Opin. Struct. Biol. 13, 23-30 (2003).
    • (2003) Cur. Curr. Opin. Struct. Biol. , vol.13 , pp. 23-30
    • Yang, W.1
  • 18
    • 0041864009 scopus 로고    scopus 로고
    • Replication of a cis-syn thymine dimer at atomic resolution
    • Ling, H., Boudsocq, F., Plosky, B.S., Woodgate, R. & Yang, W. Replication of a cis-syn thymine dimer at atomic resolution. Nature 424, 1083-1087 (2003).
    • (2003) Nature , vol.424 , pp. 1083-1087
    • Ling, H.1    Boudsocq, F.2    Plosky, B.S.3    Woodgate, R.4    Yang, W.5
  • 19
    • 0025766848 scopus 로고
    • Compilation and alignment of DNA polymerase sequences
    • Ito, J. & Braithwaite, D.K. Compilation and alignment of DNA polymerase sequences. Nucleic Acids Res. 19, 4045-4057 (1991).
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4045-4057
    • Ito, J.1    Braithwaite, D.K.2
  • 20
    • 0026111317 scopus 로고
    • The 'A rule' of mutagen specificity: A consequence of DNA polymerase bypass of non-instructional lesions?
    • Strauss, B.S. The 'A rule' of mutagen specificity: a consequence of DNA polymerase bypass of non-instructional lesions? Bioessays 13, 79-84 (1991).
    • (1991) Bioessays , vol.13 , pp. 79-84
    • Strauss, B.S.1
  • 21
    • 0033578081 scopus 로고    scopus 로고
    • A specific partner for abasic damage in DNA
    • Matray, T.J. & Kool, E.T. A specific partner for abasic damage in DNA. Nature 399, 704-708 (1999).
    • (1999) Nature , vol.399 , pp. 704-708
    • Matray, T.J.1    Kool, E.T.2
  • 22
    • 0032518398 scopus 로고    scopus 로고
    • Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
    • Doublié, S., Tabor, S., Long, A.M., Richardson, C.C. & Ellenberger, T. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution. Nature 391, 251-258 (1998).
    • (1998) Nature , vol.391 , pp. 251-258
    • Doublié, S.1    Tabor, S.2    Long, A.M.3    Richardson, C.C.4    Ellenberger, T.5
  • 23
    • 18744401872 scopus 로고    scopus 로고
    • Crystal structure of a DNA decamer containing a cis-synthymine dimer
    • Park, H. et al. Crystal structure of a DNA decamer containing a cis-synthymine dimer. Proc. Natl. Acad. Sci. USA 99, 15965-15970 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15965-15970
    • Park, H.1
  • 24
    • 0000127073 scopus 로고
    • Sequence-specific recognition of double helical nucleic acids by proteins
    • Seeman, N.C., Rosenberg, J.M. & Rich, A. Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl. Acad. Sci. USA 73, 804-808 (1976).
    • (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 804-808
    • Seeman, N.C.1    Rosenberg, J.M.2    Rich, A.3
  • 25
    • 0022163405 scopus 로고
    • Translesion DNA synthesis: Polymerase response to altered nucleotices
    • Strauss, B.S. Translesion DNA synthesis: polymerase response to altered nucleotices. Cancer Surv. 4, 493-516 (1985).
    • (1985) Cancer Surv. , vol.4 , pp. 493-516
    • Strauss, B.S.1
  • 26
    • 0027220197 scopus 로고
    • Conformational coupling in DNA polymerase fidelity
    • Johnson, K.A. Conformational coupling in DNA polymerase fidelity. Annu. Rev. Biochem. 62, 685-713 (1993).
    • (1993) Annu. Rev. Biochem. , vol.62 , pp. 685-713
    • Johnson, K.A.1
  • 27
    • 0033613841 scopus 로고    scopus 로고
    • Side chains that influence fidelity at the polymerase active site of Escherichia coli DNA polymerase I (Klenow fragment)
    • Minnick, D.T. et al. Side chains that influence fidelity at the polymerase active site of Escherichia coli DNA polymerase I (Klenow fragment). J. Biol. Chem. 274, 3067-3075 (1999).
    • (1999) J. Biol. Chem. , vol.274 , pp. 3067-3075
    • Minnick, D.T.1
  • 28
    • 17944380943 scopus 로고    scopus 로고
    • The Y-family of DNA polymerases
    • Ohmori, H. et al. The Y-family of DNA polymerases. Mol. Cell 8, 7-8 (2001).
    • (2001) Mol. Cell , vol.8 , pp. 7-8
    • Ohmori, H.1
  • 29
    • 0035997344 scopus 로고    scopus 로고
    • Error-prone repair DNA polymerases in prokaryotes and eukaryotes
    • Goodman, M.F. Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 71, 17-50 (2002).
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 17-50
    • Goodman, M.F.1
  • 30
    • 0025353966 scopus 로고
    • T-T cyclobutane dimers are misinstructive, rather than non-instructive, mutagenic lesions
    • Lawrence, C.W., Banerjee, S.K., Borden, A. & LeClerc, J.E. T-T cyclobutane dimers are misinstructive, rather than non-instructive, mutagenic lesions. Mol. Gen. Genet. 222, 166-168 (1990).
    • (1990) Mol. Gen. Genet. , vol.222 , pp. 166-168
    • Lawrence, C.W.1    Banerjee, S.K.2    Borden, A.3    LeClerc, J.E.4
  • 31
    • 0030940550 scopus 로고    scopus 로고
    • Mutagenic properties of the T-C cyclobutane dimer
    • Horsfall, M.J., Borden, A. & Lawrence, C.W. Mutagenic properties of the T-C cyclobutane dimer. J. Bacteriol. 179, 2835-2839 (1997).
    • (1997) J. Bacteriol. , vol.179 , pp. 2835-2839
    • Horsfall, M.J.1    Borden, A.2    Lawrence, C.W.3
  • 32
    • 0027241990 scopus 로고
    • Preparation and characterization of a set of deoxyoligonucleotide 49-mers containing site-specific cis-syn, trans-syn-I (6-4), and Dewar photoproducts of thymidylyl (3′→5′)-thymidine
    • Smith, C.A. & Taylor, J.S. Preparation and characterization of a set of deoxyoligonucleotide 49-mers containing site-specific cis-syn, trans-syn-I (6-4), and Dewar photoproducts of thymidylyl (3′→5′)-thymidine. J. Biol. Chem. 268, 11143-11151 (1993).
    • (1993) J. Biol. Chem. , vol.268 , pp. 11143-11151
    • Smith, C.A.1    Taylor, J.S.2
  • 33
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 34
    • 0033081529 scopus 로고    scopus 로고
    • Rapid automated molecular replacement by evolutionary search
    • Kissinger, C.R., Gehlhaar, D.K. & Fogel, D.B. Rapid automated molecular replacement by evolutionary search. Acta. Crystallogr. O 55, 484-491 (1999).
    • (1999) Acta. Crystallogr. O , vol.55 , pp. 484-491
    • Kissinger, C.R.1    Gehlhaar, D.K.2    Fogel, D.B.3
  • 35
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta. Crystallogr. A 47, 110-119 (1991).
    • (1991) Acta. Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 36
    • 3543012707 scopus 로고    scopus 로고
    • Crystallography & NMR system: A new software suite for macromolecular structure determination
    • Brünger, A.T. et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta. Crystallogr. D 54, 905-921 (1998).
    • (1998) Acta. Crystallogr. D , vol.54 , pp. 905-921
    • Brünger, A.T.1
  • 37
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls, A., Sharp, K.A. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296 (1991).
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.A.2    Honig, B.3
  • 38
  • 39
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24, 946-950 (1991).
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 40
    • 0030815133 scopus 로고    scopus 로고
    • Raster3D: Photorealistic molecular graphics
    • Merritt, E.A. & Bacon, D.J. Raster3D: photorealistic molecular graphics. Methods Enzymol. 277, 505-524 (1997).
    • (1997) Methods Enzymol. , vol.277 , pp. 505-524
    • Merritt, E.A.1    Bacon, D.J.2


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