Phylogenetics and chromosomal evolution in the Poaceae (grasses)

Australian Journal of Botany

Volumn 52, Issue 1, 2004, Pages 13-22

  Hilu, Khidir W ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME; EVOLUTION; GRASS; PHYLOGENY;

ANOMOCHLOA; ANOMOCHLOOIDEAE; ECDEIOCOLEACEAE; EMBRYOPHYTA; JOINVILLEACEAE; PHAROIDEAE; POACEAE; PUELIOIDEAE; RESTIONACEAE; STREPTOCHAETA;

EID: 1642372421     PISSN: 00671924     EISSN: None     Source Type: Journal    
DOI: 10.1071/BT03103     Document Type: Article

References (68)

1. Appel O, Bayer C (1998) Flagellariaceae. In 'The families and genera of vascular plants, IV Flowering plants - monocotyledons'. (Ed. K Kubitzki) pp. 208-211. (Springer-Verlag: Berlin)
2. Avdulov NP (1931) Karyosystematic studies in the grass family. Bulletin of Applied Boany, Genetics and Plant Breeding (Supplement) 44, 1-352.
3. Barker NP, Linder HP, Harley EH (1995) Polyphyly of Arundinoideae (Poaceae): evidence from rbcL sequence data. Systematic Botany 20, 423-435.
4. Barker NP, Linder HP, Harley EH (1999) Sequences of the grass-specific insert in the rpoC2 gene elucidate generic relationships of the Arundinoideae (Poaceae). Systematic Botany 23, 327-350.
5. Bayer C, Appel O (1998) Joinvilleaceae. In 'The families and genera of vascular plants, IV Flowering plants - monocotyledons'. (Ed. K Kubitzki) pp. 249-251. (Springer-Verlag: Berlin)
6. Bennett MD, Cox AV, Leitch IJ (2001) 'Angiosperm DNA C-value database.' http://www.rbgkew.org.uk/cval/database1.html
7. Bremer K (2002) Gondwanan evolution of the grass alliance of families (Poales). Evolution 56, 1374-1387.
8. Briggs BG, Marchant AD, Gilmore S, Porter CL (2000) A molecular phylogeny of Restionaceae and allies. In 'Monocots: systematics and evolution'. Vol. 2. (Eds KL Wilson, DA Morrison) pp. 661-671. (CSIRO Publishing: Melbourne)
9. Catalan P, Kelogg EA, Olmstead RG (1997) Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. Molecular Phylogenetics and Evolution 8, 150-166. doi:10.1006/MPEV.1997.0416
10. Clark LG, Zhang W, Wendel JF (1995) A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Systematic Botany 20, 436-460.
11. Clayton WD (1981) Evolution and distribution of grasses. Annals of the Missouri Botanical Garden 68, 5-25.
12. Clayton WD, Renvoize SA (1986) 'Genera Graminum.' (HMSO Publications: London)
13. Dahlgren RMT, Clifford HT, Yeo PF (1985) 'The families of monocotyledons.' (Springer-Verlag: New York)
14. Davis JI, Soreng RJ (1993) Phylogenetic structure in the grass family (Poaceae) as inferred from chloroplast DNA restriction site variation. American Journal of Botany 80, 1111-1454.
15. Davidse G, Pohl RW (1972) Chromosome numbers and notes on some Central American grasses. Canadian Journal of Botany 50, 273-283.
16. Devos KM, Atkinson MD, Chinoy CN, Francis HA, Harcourt RL, Koebner RMD, Lui CJ, Masojc P, Xie DE, Gale MD (1993) Chromosomal rearrangements in the rye genome relative to that of wheat. Theoretical and Applied Genetics 85, 673-680.
17. de Wet JMJ (1954) Chromosome numbers of a few South African grasses. Cytologia 19, 97-103.
18. de Wet JMJ (1987) Hybridization and polyploidy in the Poaceae. In 'Grass systematics and evolution'. (Eds TR Soderstrom, KW Hilu, CS Campbell, MA Barkworth) pp. 188-194. (Smithsonian Institution Press: Washington, DC)
19. Doyle JJ, Davis JI, Soreng RJ, Garvin D, Anderson MJ (1992) Chloroplast DNA inversions and the origin of the grass family (Poaceae). Proceedings of the National Academy of Sciences of the United States of America 89, 7722-7726.
20. Duvall MR, Morton BR (1996) Molecular phylogenetics of Poaceae: An expanded analysis of rbcL sequence data. Molecular Phylogenetics and Evolution 5, 352-358. doi:10.1006/MPEV.1996.0030
21. Esen A, Hilu KW (1989) Immunological affinities among subfamilies of the Poaceae. American Journal of Botany 76, 196-203.
22. Flovik K (1938) Cytological Studies of Arctic Grasses. Hereditas 24, 265-376.
23. Giussani LM, Cota-Sanchez H, Zuloaga FO, Kellogg EA (2001) A molecular phylogeny of the grass subfamily Panicoideae (Poaceae) shows multiple origin of C4 photosynthesis. American Journal of Botany 88, 1993-2012.
24. Goldblatt P (1980) Polyploidy in angiosperms: monocotyledons. In 'Polyploidy: biological relevance'. (Ed. WH Lewis) pp. 291-240. (Plenum Press: New York)
25. Gould FW, Shaw RB (1983). 'Grass systematics.' 2nd edn. (Texas A & M University Press: College Station)
26. GPWG (Grass Phylogeny Working Group) (2001) Phylogeny and subfamilial classification of the grasses (Poaceae). Annals of the Missouri Botanical Garden 88, 373-457.
27. Hilu KW, Alice LA (1999) Evolutionary implications of matK indels in Poaceae. American Journal of Botany 86, 1735-1741.
28. Hilu KW Alice LA (2001) A phylogeny of Chloridoideae (Poaceae) based on matK Sequences. Systematic Botany 26, 386-405.
29. Hilu KW, Alice LA, Liang H (1999) Phylogeny of Poaceae inferred from matK sequences. Annals of the Missouri Botanical Garden 86, 835-851.
30. Hilu KW, Borsch Th, Müller K, Soltis DE, Soltis PS, Savolainen V, Chase MW, Powell M, Alice LA, Evans R, Sauquet H, Neinhuis C, Slotta TA, Rohwer JG, Campbell ChS, Chatrou L (2003) Angiosperm phylogeny based on matK sequence information. American Journal of Botany 90, 1758-1776.
31. Hiratsuka J, Shimada H, Whittier R, Ishibashi T, Sakamoto M, Mori M, Kondo C, Honji Y, Sun CR, Meng BY (1989) The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Molecular & General Genetics 217, 185-194.
32. Hubbard CE (1948) Gramineae. In 'British flowering plants'. (Ed. J Hutchinson) pp 284-348. (Gawthorn Ltd: London)
33. Hunziker JH, Stebbins GL (1987) Chromosomal evolution in the Gramineae. In 'Grass systematics and evolution'. (Eds TR Soderstrom, KW Hilu, CS Campbell, MA Barkworth) pp. 179-187. (Smithsonian Institution Press: Washington, DC)
34. Hunziker JH, Wulff AF, Soderstrom TR ( 1982) Chromosome studies on the Bambusoideae (Gramineae). Brittonia 34, 30-35.
35. Hunziker JH, Wulff AF, Soderstrom TR (1989) Chromosome studies on Anomochloa and other Bambusoideae (Gramineae). Darwiniana 29, 41-45.
36. Kammacher P, Anoma G, Adjanohoun E, Aké Assi L (1973) Nobres chromosomiques de Graminées de Côte-d'Ivoire. Candollea 28, 191-217.
37. Katayama H, Ogihara Y (1996) Phylogenetic affinities of the grasses to other monocots as revealed by molecular analysis of chloroplast DNA. Current Genetics 29, 572-581. doi:10.1007/S002940050087
38. Kellogg EA, Linder HP (1995) Phylogeny of Poales. In 'Monocots: systematics and evolution'. (Eds PJ Rudall, Cribb PJ, DF Cutler, CJ Humphries) pp. 511-542. (Royal Botanic Garden: Kew)
39. Krupko S (1962) Embryological and cytological investigations of in Hypodiscus aristatus Nees (Restionaceae). Journal of South African Botany 28, 21-44.
40. Krupko S (1966) Some loose embryological and cytological observations on members of Restionaceae family. Bulletin of the Society of Amis Science Letters Poznan Ser. D 7, 59-67.
41. Kubitzki K (1998) 'Flowering plants, monocotyledons: Alismatanae and Commelinanae (except Gramineae).' (Springer-Verlag: New York)
42. Liang H, Hilu KW (1996) Application of the matK gene sequences to grass systematics. Canadian Journal of Botany 74, 125-134.
43. Linder HP, Briggs BG, Johnson LAS (1998) Restionaceae. In 'The families and genera of vascular plants, IV Flowering plants - monocotyledons'. (Ed. K Kubitzki) pp. 195-197. (Springer-Verlag: Berlin)
44. Linder HP, Briggs BG, Johnson LAS (2000) Restionaceae: a morphological phylogeny. In 'Monocots: systematics and evolution'. Vol. 2. (Eds KL Wilson, DA Morrison) pp. 653-660. (CSIRO Publishing: Melbourne)
45. Macfarlane TD, Watson L (1980) The circumscription of Poaceae subfamily Pooideae, with notes on some controversial genera. Taxon 29, 645-666.
46. Masterson J (1994) Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 264, 421-424.
47. Mehra PN, Khosla PK, Kohli BL, Kooner JS (1968) Cytological Studies in the North-Indian Grasses (Part I). Research Bulletin of the Punjab University 19, 157-230.
48. Melak AM, Hulbert SH, Butler LG, Bennetzen JL ( 1993) Structure and evolution of the genomes of Sorghum bicolor and Zea mays. Theoretical and Applied Genetics 86, 598-604.
49. Michelangeli FA, Davis JI, Stevenson DWM (2003) Phylogenetic relationships among Poaceae and related families as inferred from morphology, inversions in the plastid genome, and sequence data from the mitochondrial and plastid genomes. American Journal of Botany 90, 93-106.
50. Moore G, Devos KM, Wang Z, Gale MD (1995) Grasses, line up and form a circle. Current Biology 5, 737-739.
51. Phipps JB, Mahon JB (1970) Studies in the Arundinelleae (Gramineae). IX. Chromosome numbers of 21 species. Canadian Journal of Botany 48, 1419-1423.
52. Pohl RW, Clark LG (1992) New chromosome counts for Chusqua and Aulonemia (Poaceae: Bambusoideae). American Journal of Botany 79, 478-480.
53. Pohl RW, Davidse G (1971) Chromosome numbers of Costa Rican Grasses. Brittonia 12, 293-324.
54. Raven PH (1975) The bases of Angiosperm phylogeny: cytology. Annals of the Missouri Botanical Garden 62, 724-764.
55. Reeder JR (1977) Chromosome numbers in western grasses. American Journal of Botany 64, 102-110.
56. Sharma ML (1979) Some considerations on the phylogeny and chromosomal evolution in grasses. Cytologia 44, 679-685.
57. Shimada H, Sugiura M (1991) Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes. Nucleic Acids Research 19, 983-995.
58. Sokolovskaya AP, Probatova NS (1977) On the least chromosome number (2n = 4) of Colpodium versicolor (Stev.) Woronow (Poaceae). Botanicheskiy Zhurnal 62, 241-245.
59. Soreng RJ, Davis JI (1998) Phylogenetics and character evolution in the grass family (Poaceae): simultaneous analysis of morphological and chloroplast DNA restriction site characters sets. The Botanical Review 64, 1-85.
60. Stebbins GL (1982) Major trends of evolution in the Poaceae and their possible significance. In 'Grasses and grasslands: systematics and ecology'. (Eds JR Estes, RJ Tyrl, JN Brunken) pp. 3-36. (University of Oklahoma Press: Norman)
61. Stebbins GL (1985) Polyploidy, hybridization and the invasion of new habitats. Annals of the Missouri Botanical Garden 72, 824-832.
62. Tateoka T (1955) Karyotaxonomy in Poaceae, III. Further studies of somatic chromosomes. Cytologia 20, 296-307.
63. Tateoka T (1962) A cytological study of some Mexican grasses. Bulletin of the Torrey Botanical Club 89, 77-82.
64. Tsvelev NN, Zhukova PG (1974) On the minimal main chromosome number in the family Poaceae. Botanicheskiy Zhurnal 59, 265-269.
65. Watson L, Dallwitz MJ (1992) 'The grass genera of the world.' (CAB International: Wallingford, UK)
66. Williams CA, Harborne JB, Greenham J, Briggs BG (1997) Flavonoid evidence and the classification of Anarthriaceae within the Poales. Phytochemistry 45, 1189-1196. doi:10.1016/S0031-9422(97)00139-8
67. Zang H, Jia J, Gale MD, Devos KM (1998) Relationships between the chromosomes of Aegilops umbellulata and wheat. Theoretical and Applied Genetics 96, 69-75. doi:10.1007/S001220050710
68. Zhang W (2000) Phylogeny of the grass family (Poaceae) from rpl16 intron sequence data. Molecular Phylogenetics and Evolution 15, 135-146. doi:10.1006/MPEV.1999.0729