메뉴 건너뛰기




Volumn 81, Issue 4, 2007, Pages 726-743

Simultaneously correcting for population stratification and for genotyping error in case-control association studies

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE LOCUS; GENETIC ANALYSIS; GENETIC TRAIT; GENOTYPE; NULL ALLELE; POPULATION GENETICS; PRIORITY JOURNAL; SIMULATION;

EID: 35349022964     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1086/520962     Document Type: Article
Times cited : (13)

References (35)
  • 1
    • 85030591368 scopus 로고    scopus 로고
    • Cheng's software
    • Cheng's software, http://www2.cmu.edu.tw/~biostat/downloads/KFCpro/ KFCprogram.htm
  • 3
    • 0028090414 scopus 로고
    • Genetic dissection of complex traits
    • Lander ES, Schrok NJ (1994) Genetic dissection of complex traits. Science 265:2037-2048
    • (1994) Science , vol.265 , pp. 2037-2048
    • Lander, E.S.1    Schrok, N.J.2
  • 4
    • 0032728711 scopus 로고    scopus 로고
    • Power loss for multiallelic transmission/disequilibrium test when errors introduced: GAW11 simulated data
    • Gordon D, Matise TC, Heath SC, Ott J (1999) Power loss for multiallelic transmission/disequilibrium test when errors introduced: GAW11 simulated data. Genet Epidemiol Suppl 1 17:S587-S592
    • (1999) Genet Epidemiol , vol.17 , Issue.SUPPL. 1
    • Gordon, D.1    Matise, T.C.2    Heath, S.C.3    Ott, J.4
  • 5
    • 1842859051 scopus 로고    scopus 로고
    • Power and sample size calculations for case-control genetic association tests when errors are present: Application to single nucleotide polymorphisms
    • Gordon D, Finch SJ, Nothnagel M, Ott J (2002) Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms. Hum Hered 54:22-33
    • (2002) Hum Hered , vol.54 , pp. 22-33
    • Gordon, D.1    Finch, S.J.2    Nothnagel, M.3    Ott, J.4
  • 6
    • 0942287254 scopus 로고    scopus 로고
    • Testing for association with a case-parents design in the presence of genotyping errors
    • Morris RW, Kaplan NL (2004) Testing for association with a case-parents design in the presence of genotyping errors. Genet Epidemiol 26:142-154
    • (2004) Genet Epidemiol , vol.26 , pp. 142-154
    • Morris, R.W.1    Kaplan, N.L.2
  • 7
    • 33744481021 scopus 로고    scopus 로고
    • Effects of differential genotyping error rate on the type I error probability of case-control studies
    • Moskvina V, Graddock N, Hlmans P, Owen MJ, O'Donovan MC (2006) Effects of differential genotyping error rate on the type I error probability of case-control studies. Hum Hered 61:55-64
    • (2006) Hum Hered , vol.61 , pp. 55-64
    • Moskvina, V.1    Graddock, N.2    Hlmans, P.3    Owen, M.J.4    O'Donovan, M.C.5
  • 8
    • 0032530165 scopus 로고    scopus 로고
    • Tests and estimates of allelic association in complex inheritance
    • Morton NE, Collins A (1998) Tests and estimates of allelic association in complex inheritance. Proc Natl Acad Sci USA 95:11389-11393
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 11389-11393
    • Morton, N.E.1    Collins, A.2
  • 9
    • 0032427048 scopus 로고    scopus 로고
    • The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human disease. I. DNA pooling
    • Risch N, Teng J (1998) The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human disease. I. DNA pooling. Genome Res 8: 1273-1288
    • (1998) Genome Res , vol.8 , pp. 1273-1288
    • Risch, N.1    Teng, J.2
  • 10
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K (1999) Genomic control for association studies. Biometrics 55:997-1004
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 14
    • 0034917944 scopus 로고    scopus 로고
    • A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data
    • Gordon D, Heath SC, Liu X, Ott J (2001) A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data. Am J Hum Genet 69:371-380
    • (2001) Am J Hum Genet , vol.69 , pp. 371-380
    • Gordon, D.1    Heath, S.C.2    Liu, X.3    Ott, J.4
  • 15
    • 0347992873 scopus 로고    scopus 로고
    • Bayesian trio models for association in the presence of genotyping errors
    • Bernardinelli L, Berzuini C, Seaman S, Holmans P (2004) Bayesian trio models for association in the presence of genotyping errors. Genet Epidemiol 26:70-80
    • (2004) Genet Epidemiol , vol.26 , pp. 70-80
    • Bernardinelli, L.1    Berzuini, C.2    Seaman, S.3    Holmans, P.4
  • 16
    • 4644223393 scopus 로고    scopus 로고
    • A transmission disequilibrium test for general pedigrees that is robust to the presence of random genotyping errors and any number of untyped parents
    • Gordon D, Haynes C, Johnnidis C, Patel SB, Bowcock AM, Ott J (2004) A transmission disequilibrium test for general pedigrees that is robust to the presence of random genotyping errors and any number of untyped parents. Eur J Hum Genet 12:752-761
    • (2004) Eur J Hum Genet , vol.12 , pp. 752-761
    • Gordon, D.1    Haynes, C.2    Johnnidis, C.3    Patel, S.B.4    Bowcock, A.M.5    Ott, J.6
  • 18
    • 1542330236 scopus 로고    scopus 로고
    • Qualitative semiparametric test for genetic associations in case-control designs under structured populations
    • Chen HS, Zhu X, Zhao H, Zhang S (2003) Qualitative semiparametric test for genetic associations in case-control designs under structured populations. Ann Hum Genet 67:250-264
    • (2003) Ann Hum Genet , vol.67 , pp. 250-264
    • Chen, H.S.1    Zhu, X.2    Zhao, H.3    Zhang, S.4
  • 19
    • 10844229712 scopus 로고    scopus 로고
    • Case-control association studies in mixed populations: Correcting using genomic control
    • Shmulewitz D, Zhang J, Greenberg DA (2004) Case-control association studies in mixed populations: correcting using genomic control. Hum Hered 58:145-153
    • (2004) Hum Hered , vol.58 , pp. 145-153
    • Shmulewitz, D.1    Zhang, J.2    Greenberg, D.A.3
  • 20
    • 33646247395 scopus 로고    scopus 로고
    • Centralizing the noncentral chi-square: A new method to correct for population stratification in genetic case-control association studies
    • Gorroochurn D, Heiman GA, Hodge SE, Greenberg DA (2006) Centralizing the noncentral chi-square: a new method to correct for population stratification in genetic case-control association studies. Genet Epidemiol 30:277-289
    • (2006) Genet Epidemiol , vol.30 , pp. 277-289
    • Gorroochurn, D.1    Heiman, G.A.2    Hodge, S.E.3    Greenberg, D.A.4
  • 21
    • 84890417804 scopus 로고
    • The genetic structure of populations
    • Wright S (1951) The genetic structure of populations. Ann Eugen 15:323-354
    • (1951) Ann Eugen , vol.15 , pp. 323-354
    • Wright, S.1
  • 22
    • 34247585477 scopus 로고    scopus 로고
    • A simple and improved correction for population stratification in case-control studies
    • Epstein MP, Allen AS, Satten GA (2007) A simple and improved correction for population stratification in case-control studies. Am J Hum Genet 80:921-930
    • (2007) Am J Hum Genet , vol.80 , pp. 921-930
    • Epstein, M.P.1    Allen, A.S.2    Satten, G.A.3
  • 23
    • 0039245568 scopus 로고
    • An investigation of the effect of misclassification on the properties of chi-square-tests in the analysis of categorical data
    • Mote VL, Anderson RL (1965) An investigation of the effect of misclassification on the properties of chi-square-tests in the analysis of categorical data. Biometrika 52:95-109
    • (1965) Biometrika , vol.52 , pp. 95-109
    • Mote, V.L.1    Anderson, R.L.2
  • 24
    • 0035121797 scopus 로고    scopus 로고
    • Accounting for unmeasured population substructure in case-control studies of genetic association using novel latent-class model
    • Satten GA, Flanders WD, Yang Q (2001) Accounting for unmeasured population substructure in case-control studies of genetic association using novel latent-class model. AmJ Hum Genet 68:466-477
    • (2001) AmJ Hum Genet , vol.68 , pp. 466-477
    • Satten, G.A.1    Flanders, W.D.2    Yang, Q.3
  • 25
    • 0018671320 scopus 로고
    • Logistic disease incidence models and case-control studies
    • Prentice RL, Pyke R (1979) Logistic disease incidence models and case-control studies. Biometrika 66:403-441
    • (1979) Biometrika , vol.66 , pp. 403-441
    • Prentice, R.L.1    Pyke, R.2
  • 27
    • 0037371453 scopus 로고    scopus 로고
    • Undetected genotyping errors cause apparent overtransmission of common alleles in the transmission/ disequilibrium test
    • Mitchell AA, Cutler DJ, Chakravarti A (2003) Undetected genotyping errors cause apparent overtransmission of common alleles in the transmission/ disequilibrium test. Am J Hum Genet 72:598-610
    • (2003) Am J Hum Genet , vol.72 , pp. 598-610
    • Mitchell, A.A.1    Cutler, D.J.2    Chakravarti, A.3
  • 28
    • 31544460720 scopus 로고    scopus 로고
    • Robust genomic control for association studies
    • Zheng G, Freidlin B, Gastwirth JL (2006) Robust genomic control for association studies. Am J Hum Genet 78:350-356
    • (2006) Am J Hum Genet , vol.78 , pp. 350-356
    • Zheng, G.1    Freidlin, B.2    Gastwirth, J.L.3
  • 29
    • 0031715548 scopus 로고    scopus 로고
    • The role of ethnicity in cancer susceptibility gene polymorphisms: The example of CYP1A1
    • Garte S (1998) The role of ethnicity in cancer susceptibility gene polymorphisms: the example of CYP1A1. Carcinogenesis 19:1329-1332
    • (1998) Carcinogenesis , vol.19 , pp. 1329-1332
    • Garte, S.1
  • 32
    • 30344454257 scopus 로고    scopus 로고
    • Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research
    • Tintle NL, Ahn K, Mendell NR, Gordon D, Finch SJ (2005) Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research. BMC Genet Suppl 1 6:S154
    • (2005) BMC Genet , vol.6 , Issue.SUPPL. 1
    • Tintle, N.L.1    Ahn, K.2    Mendell, N.R.3    Gordon, D.4    Finch, S.J.5
  • 33
    • 0035131982 scopus 로고    scopus 로고
    • The impact of genotyping error on family-based analysis of quantitative traits
    • Abecasis GR, Cherny SS, Cardon LR (2001) The impact of genotyping error on family-based analysis of quantitative traits. Eur J Hum Genet 9:130-134
    • (2001) Eur J Hum Genet , vol.9 , pp. 130-134
    • Abecasis, G.R.1    Cherny, S.S.2    Cardon, L.R.3
  • 34
    • 4944258167 scopus 로고    scopus 로고
    • Robustness of case-control studies of genetic factors to population stratification: Magnitude of bias and type I error
    • Khlat M, Cazes MH, Genin E, Guiguet M (2004) Robustness of case-control studies of genetic factors to population stratification: magnitude of bias and type I error. Cancer Epidemiol Biomarkers Prev 13:1660-1664
    • (2004) Cancer Epidemiol Biomarkers Prev , vol.13 , pp. 1660-1664
    • Khlat, M.1    Cazes, M.H.2    Genin, E.3    Guiguet, M.4
  • 35
    • 0036154960 scopus 로고    scopus 로고
    • Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data
    • Douglas JA, Skol AD, Boehnke M (2002) Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data. Am J Hum Genet 70:487-495
    • (2002) Am J Hum Genet , vol.70 , pp. 487-495
    • Douglas, J.A.1    Skol, A.D.2    Boehnke, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.