Community analysis of hydrogen-producing extreme thermophilic anaerobic microflora enriched from cow manure with five substrates

Applied Microbiology and Biotechnology

Volumn 77, Issue 1, 2007, Pages 213-222

  Yokoyama, Hiroshi ^a   Moriya, Naoko ^a   Ohmori, Hideyuki ^a   Waki, Miyoko ^a   Ogino, Akifumi ^a   Tanaka, Yasuo ^a  

^a NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

Author keywords

Caldoanaerobacter subterraneus; Caloramator fervidus; Community structure; Extreme thermophile; Hydrogen production

Indexed keywords

ELECTROPHORESIS; HYDROGEN PRODUCTION; MANURES; SUBSTRATES;

CALDOANAEROBACTER SUBTERRANEUS; CALORAMATOR FERVIDUS; COMMUNITY STRUCTURE; EXTREME THERMOPHILE;

MICROORGANISMS;

CELLOBIOSE; GLUCOSE; HYDROGEN; LACTOSE; MONOSACCHARIDE; STARCH; XYLAN; XYLOSE;

ANALYTICAL METHOD; ANOXIC CONDITIONS; CATTLE; COMMUNITY STRUCTURE; HYDROGEN; MANURE; THERMOPHILIC BACTERIUM;

ANAEROBIC BACTERIUM; ARTICLE; CALDOANAEROBACTER SUBTERRANEUS; CALORAMATOR FERVIDUS; COMMUNITY STRUCTURE; MANURE; NONHUMAN; NUCLEOTIDE SEQUENCE; THERMOPHILIC BACTERIUM;

ANIMALS; BACTERIA; CATTLE; CELLOBIOSE; CLOSTRIDIUM THERMOCELLUM; ECOSYSTEM; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GLUCOSE; HYDROGEN; LACTOSE; MANURE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; STARCH; TEMPERATURE; THERMOANAEROBACTERIUM; XYLOSE;

BACTERIA (MICROORGANISMS); CALORAMATOR FERVIDUS; UNIDENTIFIED BACTERIUM;

EID: 35348909612     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-1144-0     Document Type: Article

References (36)

1. Ahn Y, Park EJ, Oh YK, Park S, Webster G, Weightman AJ (2005) Biofilm microbial community of a thermophilic trickling biofilter used for continuous biohydrogen production. FEMS Microbiol Lett 249:31-38
2. Ahring BK, Ibrahim AA, Mladenovska Z (2001) Effect of temperature increase from 55 to 65 degrees C on performance and microbial population dynamics of an anaerobic reactor treating cattle manure. Water Res 35:2446-2452
3. Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2006) New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol 72:5734-5741
4. Bao Q, Tian Y, Li W, Xu Z, Xuan Z, Hu S, Dong W, Yang J, Chen Y, Xue Y, Xu Y, Lai X, Huang L, Wang J, Yu J, Yang H (2002) A complete sequence of the T. tengcongensis genome. Genome Res 12:689-700
5. Fang HHP, Liu H, Zhang T (2002a) Characterization of a hydrogen-producing granular sludge. Biotechnol Bioeng 78:44-52
6. Fang HHP, Zhang T, Liu H (2002b) Microbial diversity of a mesophilic hydrogen-producing sludge. Appl Microbiol Biotechnol 58:112-118
7. Fardeau ML, Magot M, Patel BKC, Thomas P, Garcia JL, Ollivier B (2000) Thermoanaerobacter subterraneus sp. nov., a novel thermophile isolated from oilfield water. Int J Syst Evol Microbiol 50:2141-2149
8. Fardeau ML, Salinas MB, L'Haridon S, Jeanthon C, Verhe F, Cayol JL, Patel BKC, Garcia JL, Ollivier B (2004) Isolation from oil reservoirs of novel thermophilic anaerobes phylogenetically related to Thermoanaerobacter subterraneus: reassignment of T. subterraneus, Thermoanaerobacter yonseiensis, Thermoanaerobacter tengcongensis and Carboxydibrachium pacificum to Caldanaerobacter subterraneus gen. nov., sp. nov., comb. nov. as four novel subspecies. Int J Syst Evol Microbiol 54:467-474
9. Hallenbeck PC (2005) Fundamentals of the fermentative production of hydrogen. Water Sci Technol 52:21-29
10. Hobel CFV, Marteinsson VT, Hauksdottir S, Fridjonsson O, Skirnisdottir S, Hreggvidsson GO, Kristjansson JK (2004) Use of low nutrient enrichments to access novel amylase genes in silent diversity of thermophiles. World J Microbiol Biotechnol 20:801-809
11. Hussy I, Hawkes FR, Dinsdale R, Hawkes DL (2003) Continuous fermentative hydrogen production from a wheat starch co-product by mixed microflora. Biotechnol Bioeng 84:619-626
12. Kadar Z, De Vrije T, van Noorden GE, Budde MAW, Szengyel Z, Reczey K, Claassen PAM (2004) Yields from glucose, xylose, and paper sludge hydrolysate during hydrogen production by the extreme thermophile Caldicellulosiruptor saccharolyticus. Appl Biochem Biotechnol 114:497-508
13. Kataoka N, Miya A, Kiriyama K (1997) Studies on hydrogen production by continuous culture system of hydrogen-producing anaerobic bacteria. Water Sci Technol 36:41-47
14. Kim BC, Grote R, Lee DW, Antranikian G, Pyun YR (2001) Thermoanaerobacter yonseiensis sp. nov., a novel extremely thermophilic, xylose-utilizing bacterium that grows at up to 85 degrees C. Int J Syst Evol Microbiol 51:1539-1548
15. Kotsopoulos TA, Zeng RJ, Angelidaki I (2006) Biohydrogen production in granular up-flow anaerobic sludge blanket (UASB) reactors with mixed cultures under hyper-thermophilic temperature (70 degrees C). Biotechnol Bioeng 94:296-302
16. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Wiley, New York, NY, pp 115-175
17. Lueders T, Friedrich MW (2003) Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl Environ Microbiol 69:320-326
18. Miroshnichenko ML, Bonch-Osmolovskaya EA (2006) Recent developments in the thermophilic microbiology of deep-sea hydrothermal vents. Extremophiles 10:85-96
19. Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
20. Noike T, Mizuno O (2000) Hydrogen fermentation of organic municipal wastes. Water Sci Technol 42:155-162
21. Patel BKC, Monk C, Littleworth H, Morgan HW, Daniel RM (1987) Clostridium fervidus sp. nov., a new chemoorganotrophic acetogenic thermophile. Int J Syst Bacteriol 37:123-126
22. Ryckeboer J, Mergaert J, Vaes K, Klammer S, De Clercq D, Coosemans J, Insam H, Swings J (2003) A survey of bacteria and fungi occurring during composting and self-heating processes. Ann Microbiol 53:349-410
23. Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501-1506
24. Schroder C, Selig M, Schonheit P (1994) Glucose fermentation to acetate, CO2 and H2 in the anaerobic hyperthermophilic eubacterium Thermotoga maritima: involvement of the Embden-Meyerhof pathway. Arch Microbiol 161:460-470
25. Shin HS, Youn JH, Kim SH (2004) Hydrogen production from food waste in anaerobic mesophilic and thermophilic acidogenesis. Int J Hydrog Energy 29:1355-1363
26. Sokolova TG, Gonzalez JM, Kostrikina NA, Chernyh NA, Tourova TP, Kato C, Bonch-Osmolovskaya EA, Robb FT (2001) Carboxydobrachium pacificum gen. nov., sp. nov., a new anaerobic, thermophilic, CO-utilizing marine bacterium from Okinawa Trough. Int J Syst Evol Microbiol 51:141-149
27. Stackebrandt E, Goebel BM (1994) A place for DNA-DNA reassociation and 16s rRNA sequence-analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849
28. Tanisho S, Kuromoto M, Kadokura N (1998) Effect of CO2 removal on hydrogen production by fermentation. Int J Hydrog Energy 23:559-563
29. Thompson JD, Higgins DG, Gibson TJ (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
30. Ueno Y, Otsuka S, Morimoto M (1996) Hydrogen production from industrial wastewater by anaerobic microflora in chemostat culture. J Ferment Bioeng 82:194-197
31. Ueno Y, Haruta S, Ishii M, Igarashi Y (2001a) Changes in product formation and bacterial community by dilution rate on carbohydrate fermentation by methanogenic microflora in continuous flow stirred tank reactor. Appl Microbiol Biotechnol 57:65-73
32. Ueno Y, Haruta S, Ishii M, Igarashi Y (2001b) Microbial community in anaerobic hydrogen-producing microflora enriched from sludge compost. Appl Microbiol Biotechnol 57:555-562
33. van Niel EWJ, Budde MAW, de Haas GG, van der Wal FJ, Claasen PAM, Stams AJM (2002) Distinctive properties of high hydrogen producing extreme thermophiles, Caldicellulosiruptor saccharolyticus and Thermotoga elfii. Int J Hydrog Energy 27:1391-1398
34. Wu SY, Hung CH, Lin CN, Chen HW, Lee AS, Chang JS (2006) Fermentative hydrogen production and bacterial community structure in high-rate anaerobic bioreactors containing silicone-immobilized and self-flocculated sludge. Biotechnol Bioeng 93:934-946
35. Xue YF, Xu Y, Liu Y, Ma YH, Zhou PJ (2001) Thermoanaerobacter tengcongensis sp. nov., a novel anaerobic, saccharolytic, thermophilic bacterium isolated from a hot spring in Tengcong, China. Int J Syst Evol Microbiol 51:1335-1341
36. Yokoyama H, Waki M, Moriya N, Yasuda T, Tanaka Y, Haga K (2007) Effect of fermentation temperature on hydrogen production from cow waste slurry by using anaerobic microflora within the slurry. Appl Microbiol Biotechnol 74:474-483