Single amino acid substitutions in lattice proteins using statistical mechanical model for protein folding

Journal of the Physical Society of Japan

Volumn 76, Issue 10, 2007, Pages

  Wako, Hiroshi ^a   Abe, Haruo ^b  

^a WASEDA UNIVERSITY   (Japan)

^b NISHINIPPON INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

value analysis; Conformational stability; Cooperativity of protein folding; Free energy profile; Transition state

Indexed keywords

EID: 35348904936     PISSN: 00319015     EISSN: 13474073     Source Type: Journal    
DOI: 10.1143/JPSJ.76.104801     Document Type: Article

References (15)

1. B. W. Matthews: Adv. Protein Chem. 46 (1995) 249.
2. K. Yutani, K. Takano, and J. Funahashi: in Old and New Views of Protein Folding, ed. K. Kuwajima and M. Arai (Elsevier Science, Amsterdam, 1999) p. 175.
3. K. Takano and K. Yutani: Curr. Top. Peptide Protein Res. 4 (2001) 1.
4. L. S. Itzhaki, D. E. Otzen, and A. R. Fersht: J. Mol. Biol. 254 (1995) 260.
5. M. Oliveberg: Curr. Opin. Struct. Biol. 11 (2001) 94.
6. A. R. Fersht and V. Daggett: Cell 108 (2002) 573.
7. H. Abe and H. Wako: J. Phys. Soc. Jpn. 73 (2004) 1143.
8. H. Abe and H. Wako: Phys. Rev. E 74 (2006) 011913.
9. S. Miyazawa and R. L. Jernigan: Macromolecules 18 (1985) 534.
10. L. A. Mirny, V. Abkevich, and E. T. Shakhnovich: Fold Des. 1 (1996) 103.
11. V. I. Abkevich, A. M. Gutin, and E. I. Shakhnovich: Fold Des. 1 (1996) 221.
12. H. Abe and N. Go: Biopolymers 20 (1981) 1013.
13. D. Shortle, W. E. Stites, and A. K. Meeker: Biochemistry 29 (1990) 8033.
14. L. Serrano, J. T. Kellis, P. Cann, A. Matouschek, and A. R. Fersht: J. Mol. Biol. 224 (1992) 783.
15. A. R. Fersht and S. Sato: Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 7976.