A molecular timetable for apical bud formation and dormancy induction in poplar

Plant Cell

Volumn 19, Issue 8, 2007, Pages 2370-2390

  Ruttink, Tom ^a,b   Arend, Matthias ^c   Morreel, Kris ^a,b   Storme, Véronique ^a,b   Rombauts, Stephane ^a,b   Fromm, Jörg ^c   Bhalerao, Rishikesh P ^d   Boerjan, Wout ^a,b   Rohde, Antje ^a,b  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

^c TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^d SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DEHYDRATION; ELECTRON MICROSCOPY; GENE EXPRESSION; METABOLITES; PLANTS (BOTANY);

ABSCISIC ACID; ARABIDOPSIS THALIANA; DORMANCY; ETHYLENE SIGNAL TRANSDUCTION;

MOLECULAR BIOLOGY;

ARABIDOPSIS; ARABIDOPSIS THALIANA; POPULUS ALBA X POPULUS TREMULA;

EID: 35348893268     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.107.052811     Document Type: Article

References (75)

1. Arend, M., and Fromm, J. (2003). Ultrastructural changes in cambial cell derivatives during xylem differentiation in poplar. Plant Biol. 5: 255-264.
2. Barrero, J.M., Rodríguez, P.L., Quesada, V., Piqueras, P., Ponce, M.R., and Micol, J.L. (2006). Both abscisic acid (ABA)-dependent and ABA-independent pathways govern the induction of NCED3, AAO3 and ABA1 in response to salt stress. Plant Cell Environ. 29: 2000-2008.
3. Baumbusch, L.O., Hughes, D.W., Galau, G.A., and Jakobsen, K.S. (2004). LEC1, FUS3, ABI3 and Em expression reveals no correlation with dormancy in Arabidopsis. J. Exp. Bot. 55: 77-87.
4. Beemster, G.T.S., De Veylder, L., Vercruysse, S., West, G., Rombaut, D., Van Hummelen, P., Galichet, A., Gruissem, W., Inzé, D., and Vuylsteke, M. (2005). Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis. Plant Physiol. 138: 734-743.
5. Benedict, C., Skinner, J.S., Meng, R., Chang, Y., Bhalerao, R., Huner, N.P.A., Finn, C.E., Chen, T.H.H., and Hurry, V. (2006). The CBF1-dependent low temperature signalling pathway, regulon and increase in freeze tolerance are conserved in Populus spp. Plant Cell Environ. 29: 1259-1272.
6. Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B Stat. Methodol. 57: 289-300.
7. Böhlenius, H., Huang, T., Charbonnel-Campaa, L., Brunner, A.M., Jansson, S., Strauss, S.H., and Nilsson, O. (2006). CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312: 1040-1043.
8. Boss, P.K., Bastow, R.M., Mylne, J.S., and Dean, C. (2004). Multiple pathways in the decision to flower: Enabling, promoting, and resetting. Plant Cell 14 (suppl.): S18-S31.
9. Bowman, J.L., Eshed, Y., and Baum, S.F. (2002). Establishment of polarity in angiosperm lateral organs. Trends Genet. 18: 134-141.
10. Byrne, M.E., Ross, B., Curtis, M., Arroyo, J.M., Dunham, M., Hudson, A., and Martienssen, R.A. (2000). Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Nature 408: 967-971.
11. Cadman, C.S.C., Toorop, P.E., Hilhorst, H.W.M., and Finch-Savage, W.E. (2006). Gene expression profile of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism. Plant J. 46: 805-822.
12. Chang, S., Puryear, J., and Cairney, J. (1993). A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11: 113-116.
13. Cook, D., Fowler, S., Fiehn, O., and Thomashow, M.F. (2004). A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc. Natl. Acad. Sci. USA 101: 15243-15248.
14. Desbrosses, G.G., Kopka, J., and Udvardi, M.K. (2005). Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions. Plant Physiol. 137: 1302-1318.
15. Druart, N., Johansson, A., Baba, K., Schrader, J., Sjödin, A., Bhalerao, R.R., Resman, L., Trygg, J., Moritz, T., and Bhalerao, R.P. (2007). Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage specific modulation of transcriptional and metabolic networks. Plant J. 50: 557-573.
16. Eagles, C.F., and Wareing, P.F. (1964). The role of growth substances in the regulation of bud dormancy. Physiol. Plant. 17: 697-709.
17. Eriksson, M.E., and Millar, A.J. (2003). The circadian clock. A plant's best friend in a spinning world. Plant Physiol. 132: 732-738.
18. Eshed, Y., Baum, S.F., and Bowman, J.L. (1999). Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99: 199-209.
19. Fedoroff, N.V. (2002). Cross-talk in abscisic acid signaling. Sci. STKE 140: re10.1-re10.12, www.stke.org/cgi/content/full/sigtrans;2002/ 140/re10.
20. Finkelstein, R.R., and Rock, C.D. (September 30, 2002). Abscisic acid biosynthesis and response. In The Arabidopsis Book, C.R. Somerville and E.M. Meyerowitz, eds (Rockville, MD: American Society of Plant Biologists), doi/10.1199/tab.0058, http://www.aspb.org/publications/arabidopsis/.
21. Fleet, C.M., and Sun, T.-p. (2005). A DELLAcate balance: The role of gibberellin in plant morphogenesis. Curr. Opin. Plant Biol. 8: 77-85.
22. Fowler, S., and Thomashow, M.F. (2002). Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 14: 1675-1690.
23. Fujita, M., Fujita, Y., Maruyama, K., Seki, M., Hiratsu, K., Ohme-Takagi, M., Tran, L.-S.P., Yamaguchi-Shinozaki, K., and Shinozaki, K. (2004). A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J. 39: 863-876.
24. Fujita, Y., Fujita, M., Satoh, R., Maruyama, K., Parvez, M.M., Seki, M., Hiratsu, K., Ohme-Takagi, M., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2005). AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell 17: 3470-3488.
25. Guo, H., and Ecker, J.R. (2004). The ethylene signaling pathway: New insights. Curr. Opin. Plant Biol. 7: 40-49.
26. Hake, S., Smith, H.M.S., Holtan, H., Magnani, E., Mele, G., and Ramirez, J. (2004). The role of knox genes in plant development. Annu. Rev. Cell Dev. Biol. 20: 125-151.
27. Himmelbach, A., Yang, Y., and Grill, E. (2003). Relay and control of abscisic acid signaling. Curr. Opin. Plant Biol. 6: 470-479.
28. Horvath, D.P., Anderson, J.V., Chao, W.S., and Foley, M.E. (2003). Knowing when to grow: Signals regulating bud dormancy. Trends Plant Sci. 8: 534-540.
29. Hoth, S., Morgante, M., Sanchez, J.-P., Hanafey, M.K., Tingey, S.V., and Chua, N.-H. (2002). Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant. J. Cell Sci. 115: 4891-4900.
30. Katz, A., Oliva, M., Mosquna, A., Hakim, O., and Ohad, N. (2004). FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development. Plant J. 37: 707-719.
31. Kepinski, S. (2006). Integrating hormone signaling and patterning mechanisms in plant development. Curr. Opin. Plant Biol. 9: 28-34.
32. Kim, S., Kang, J.-y., Cho, D.-I., Park, J.H., and Kim, S.Y. (2004). ABF2, an ABRE-binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance. Plant J. 40: 75-87.
33. Kurup, S., Jones, H.D., and Holdsworth, M.J. (2000). Interactions of the developmental regulator ABI3 with proteins identified from developing Arabidopsis seeds. Plant J. 21: 143-155.
34. Lange, B.M., and Ghassemian, M. (2005). Comprehensive postgenomic data analysis approaches integrating biochemical pathway maps. Phytochemistry 66: 413-451.
35. Lee, Y.-H., Oh, H.-S., Cheon, C.-I., Hwang, I.-T., Kim, Y.-J., and Chun, J.-Y. (2001). Structure and expression of the Arabidopsis thaliana homeobox gene Athb-12. Biochem. Biophys. Res. Commun. 284: 133-141.
36. Maruyama, K., Sakuma, Y., Kasuga, M., Ito, Y., Seki, M., Goda, H., Shimada, Y., Yoshida, S., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2004). Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J. 38: 982-993.
37. Mazzella, M.A., Arana, M.V., Staneloni, R.J., Perelman, S., Rodriguez Batiller, M.J., Muschietti, J., Cerdán, P.D., Chen, K., Sánchez, R.A., Zhu, T., Chory, J., and Casal, J.J. (2005). Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light. Plant Cell 17: 2507-2516.
38. Mizukami, Y., and Fischer, R.L. (2000). Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis. Proc. Natl. Acad. Sci. USA 97: 942-947.
39. Mølmann, J.A., Asante, D.K.A., Jensen, J.B., Krane, M.N., Ernstsen, A., Junttila, O., and Olsen, J.E. (2005). Low night temperature and inhibition of gibberellin biosynthesis override phytochrome action and induce bud set and cold acclimation, but not dormancy in PHYA overexpressors and wild-type of hybrid aspen. Plant Cell Environ. 28: 1579-1588.
40. Nakano, T., Suzuki, K., Fujimura, T., and Shinshi, H. (2006). Genomewide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol. 140: 411-432.
41. Nitsch, J.P. (1957). Growth responses of woody plants to photoperiodic stimuli. Proc. Am. Soc. Hortic. Sci. 70: 512-525.
42. 1 in shoot tips of Salix pentandra seedlings precedes cessation of shoot elongation under short photoperiod. Physiol. Plant. 95: 627-632.
43. Olsen, J.E., Junttila, O., Nilsen, J., Eriksson, M.E., Martinussen, I., Olsson, O., Sandberg, G., and Moritz, T. (1997). Ectopic expression of oat phytochrome A in hybrid aspen changes critical daylength for growth and prevents cold acclimatization. Plant J. 12: 1339-1350.
44. Parcy, F., Valon, C., Raynal, M., Gaubier-Comella, P., Delseny, M., and Giraudat, J. (1994). Regulation of gene expression programs during Arabidopsis seed development: Roles of the ABI3 locus and of endogenous abscisic acid. Plant Cell 6: 1567-1582.
45. Razem, F.A., El-Kereamy, A., Abrams, S.R., and Hill, R.D. (2006). The RNA-binding protein FCA is an abscisic acid receptor. Nature 439: 290-294.
46. Riaño-Pachón, D.M., Ruzicic, S., Dreyer, I., and Mueller-Roeber, B. (2007). PlnTFDB: An integrative plant transcription factor database. BMC Bioinformatics 8: 42.1-42.10, http://www. biomedcentral.com/1471-2105/8/42.
47. Rohde, A., and Bhalerao, R.P. (2007). Plant dormancy in the perennial context. Trends Plant Sci. 12: 217-223.
48. Rohde, A., and Boerjan, W. (2001). Insights into bud development and dormancy in poplar. In Trends in European Forest Tree Physiology Research, Cost Action A6: EUROSILVA, Tree Physiology, Vol. 2, S. Huttunen, H. Heikkilä, J. Bucher, B. Sundberg, P. Jarvis, and R. Matyssek, eds (Dordrecht, The Netherlands: Kluwer Academic Publishers), pp. 33-52.
49. Rohde, A., De Rycke, R., Beeckman, T., Van Montagu, M., and Boerjan, W. (2000). ABI3 affects plastid differentiation in dark-grown Arabidopsis seedlings. Plant Cell 12: 35-52.
50. Rohde, A., Prinsen, E., De Rycke, R., Engler, G., Van Montagu, M., and Boerjan, W. (2002). PtABI3 impinges on the growth and differentiation of embryonic leaves during bud set in poplar. Plant Cell 14: 1885-1901.
51. Rohde, A., Van Montagu, M., Inzé, D., and Boerjan, W. (1997). Factors regulating the expression of cell cycle genes in individual buds of Populus. Planta 201: 43-52.
52. Ruonala, R., Rinne, P.L.H., Baghour, M., Moritz, T., Tuominen, H., and Kangajärvi, J. (2006). Transitions in the functioning of the shoot apical meristem in birch (Betula pendula) involve ethylene. Plant J. 46: 628-640.
53. Ruuska, S.A., Girke, T., Benning, C., and Ohlrogge, J.B. (2002). Contrapuntal networks of gene expression during Arabidopsis seed filling. Plant Cell 14: 1191-1206.
54. Sakuma, Y., Maruyama, K., Osakabe, Y., Qin, F., Seki, M., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2006). Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18: 1292-1309.
55. Schaller, G.E., and Kieber, J.J. (March 27, 2002). Ethylene. In The Arabidopsis Book, C.R. Somerville and E.M. Meyerowitz, eds (Rockville, MD: American Society Plant Biologists), doi/10.1199/tab.0071, www.aspb.org/ publications/arabidopsis/.
56. Schrader, J., Moyle, R., Bhalerao, R., Hertzberg, M., Lundeberg, J., Nilsson, P., and Bhalerao, R.P. (2004). Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. Plant J. 40: 173-187.
57. Seki, M., et al. (2002). Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31: 279-292.
58. Smith, C.A., Want, E.J., O'Maille, G., Abagyan, R., and Siuzdak, G. (2006). XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 78: 779-787.
59. Stein, S.E. (1999). An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data. J. Am. Soc. Mass Spectrom. 10: 770-781.
60. Suzuki, M., Kao, C.-Y., Cocciolone, S., and McCarty, D.R. (2001). Maize VP1 complements Arabidopsis abi3 and confers a novel ABA/auxin interaction in roots. Plant J. 28: 409-418.
61. Suzuki, M., Ketterling, M.G., Li, Q.-B., and McCarty, D.R. (2003). Viviparous1 alters global gene expression patterns through regulation of abscisic acid signaling. Plant Physiol. 132: 1664-1677.
62. Sylven, N. (1940). Lang-och kortkagstyper av de svenska skogstraden [Long day and short day types of Swedish forest trees]. Svensk Papperstidn. 43: 317-324, 332-342, 350-354.
63. Tamminen, I., Mäkelä, P., Heino, P., and Palva, E.T. (2001). Ectopic expression of ABI3 gene enhances freezing tolerance in response to abscisic acid and low temperature in Arabidopsis thaliana. Plant J. 25: 1-8.
64. Tanino, K. (2004). Hormones and endodormancy induction in woody plants. J. Crop Improv. 10: 157-199.
65. Thimm, O., Bläsing, O., Gibon, Y., Nagel, A., Meyer, S., Krüger, P., Selbig, J., Müller, L.A., Rhee, S.Y., and Stitt, M. (2004). MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37: 914-939.
66. Torres Acosta, J.A., de Almeida Engler, J., Raes, J., Magyar, Z., De Groodt, R., Inzé, D., and De Veylder, L. (2004). Molecular characterization of Arabidopsis PHO80-like-proteins, a novel class of CDKA;1-interacting cyclins. Cell. Mol. Life Sci. 61: 1485-1497.
67. Vandepoele, K., Raes, J., De Veylder, L., Rouzé, P., Rombauts, S., and Inzé, D. (2002). Genome-wide analysis of core cell cycle genes in Arabidopsis. Plant Cell 14: 903-916.
68. Vogel, J.T., Zarka, D.G., Van Buskirk, H.A., Fowler, S.G., and Thomashow, M.F. (2005). Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J. 41: 195-211.
69. Wang, G., Kong, H., Sun, Y., Zhang, X., Zhang, W., Altman, N., dePamphilis, C.W., and Ma, H. (2004). Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins. Plant Physiol. 135: 1084-1099.
70. Wang, H., and Deng, X.W. (April 4, 2002). Phytochrome signaling mechanism. In The Arabidopsis Book, C.R. Somerville and E.M. Meyerowitz, eds (Rockville, MD: American Society Plant Biologists), doi/10.1199/tab.0074.1, www.aspb.org/publications/arabidopsis/.
71. Wareing, P.F. (1956). Photoperiodism in woody plants. Annu. Rev. Plant Physiol. 7: 191-214.
72. Weiser, C.J. (1970). Cold resistance and injury in woody plants. Science 169: 1269-1278.
73. Welling, A., Moritz, T., Palva, E.T., and Junttila, O. (2002). Independent activation of cold acclimation by low temperature and short photoperiod in hybrid aspen. Plant Physiol. 129: 1633-1641.
74. Wigge, P.A., Kim, M.C., Jaeger, K.E., Busch, W., Schmid, M., Lohmann, J.U., and Weigel, D. (2005). Integration of spatial and temporal information during floral induction in Arabidopsis. Science 309: 1056-1059.
75. Wolfinger, R.D., Gibson, G., Wolfinger, E.D., Bennett, L., Hamadeh, H., Bushel, P., Afshari, C., and Paules, R.S. (2001). Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8: 625-637.