메뉴 건너뛰기




Volumn 17, Issue 9, 2005, Pages 2507-2516

Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light

Author keywords

[No Author keywords available]

Indexed keywords

GENES; PHYSIOLOGY;

EID: 33644693538     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.105.034322     Document Type: Article
Times cited : (36)

References (41)
  • 1
    • 0031252205 scopus 로고    scopus 로고
    • Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock
    • Anderson, S.L., Somers, D.E., Millar, A.J., Hanson, K., Chory, J., and Kay, S.A. (1997). Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. Plant Cell 9, 1721-1743.
    • (1997) Plant Cell , vol.9 , pp. 1721-1743
    • Anderson, S.L.1    Somers, D.E.2    Millar, A.J.3    Hanson, K.4    Chory, J.5    Kay, S.A.6
  • 2
    • 0037015302 scopus 로고    scopus 로고
    • The photomorphogenesis regulator DET1 binds the amino-terminal tail of histone H2B in a nucleosome context
    • Benvenuto, G., Formiggini, F., Laflamme, P., Malakhov, M., and Bowler, C. (2002). The photomorphogenesis regulator DET1 binds the amino-terminal tail of histone H2B in a nucleosome context. Curr. Biol. 12, 1529-1534.
    • (2002) Curr. Biol. , vol.12 , pp. 1529-1534
    • Benvenuto, G.1    Formiggini, F.2    Laflamme, P.3    Malakhov, M.4    Bowler, C.5
  • 3
    • 1842369623 scopus 로고    scopus 로고
    • LEAFY expression and flower initiation in Arabidopsis
    • Blázquez, M.A., Soowal, L.N., Lee, I., and Weigel, D. (1997). LEAFY expression and flower initiation in Arabidopsis. Development 124, 3835-3844.
    • (1997) Development , vol.124 , pp. 3835-3844
    • Blázquez, M.A.1    Soowal, L.N.2    Lee, I.3    Weigel, D.4
  • 4
    • 0032037506 scopus 로고    scopus 로고
    • Different phototransduction kinetics of phytochrome A and phytochrome B in Arabidopsis thaliana
    • Casal, J.J., Cerdan, P.D., Staneloni, R.J., and Cattaneo, L. (1998). Different phototransduction kinetics of phytochrome A and phytochrome B in Arabidopsis thaliana. Plant Physiol. 116, 1533-1538.
    • (1998) Plant Physiol. , vol.116 , pp. 1533-1538
    • Casal, J.J.1    Cerdan, P.D.2    Staneloni, R.J.3    Cattaneo, L.4
  • 5
    • 0033868904 scopus 로고    scopus 로고
    • Sustained but not transient phytochrome A signaling targets a region of a Lhcb1*2 promoter not necessary for phytochrome B action
    • Cerdán, P.D., Staneloni, R.J., Ortega, J., Bunge, M.M., Rodriguez-Batiller, J., Sánchez, R.A., and Casal, J.J. (2000). Sustained but not transient phytochrome A signaling targets a region of a Lhcb1*2 promoter not necessary for phytochrome B action. Plant Cell 12, 1203-1211.
    • (2000) Plant Cell , vol.12 , pp. 1203-1211
    • Cerdán, P.D.1    Staneloni, R.J.2    Ortega, J.3    Bunge, M.M.4    Rodriguez-Batiller, J.5    Sánchez, R.A.6    Casal, J.J.7
  • 7
    • 10944267031 scopus 로고    scopus 로고
    • Light signal transduction in higher plants
    • Chen, M., Chory, J., and Fankhauser, C. (2004). Light signal transduction in higher plants. Annu. Rev. Genet. 38, 87-117.
    • (2004) Annu. Rev. Genet. , vol.38 , pp. 87-117
    • Chen, M.1    Chory, J.2    Fankhauser, C.3
  • 8
    • 15844417905 scopus 로고    scopus 로고
    • A simple procedure for estimating the false discovery rate
    • Dalmasso, C., Broët, P., and Moreau, T. (2005). A simple procedure for estimating the false discovery rate. Bioinformatics 21, 660-668.
    • (2005) Bioinformatics , vol.21 , pp. 660-668
    • Dalmasso, C.1    Broët, P.2    Moreau, T.3
  • 9
    • 0142134233 scopus 로고    scopus 로고
    • Genomic and physiological studies of early cryptochrome 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light
    • Folta, K.M., Pontin, M.A., Karlin-Neumann, G., Bottini, R., and Spalding, E.P. (2003). Genomic and physiological studies of early cryptochrome 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light. Plant J. 36, 203-214.
    • (2003) Plant J. , vol.36 , pp. 203-214
    • Folta, K.M.1    Pontin, M.A.2    Karlin-Neumann, G.3    Bottini, R.4    Spalding, E.P.5
  • 10
    • 19344366781 scopus 로고    scopus 로고
    • A practical false discovery rate approach to identifying patterns of differential expression in microarray data
    • Grant, G.R., Liu, J., and Stoeckert, C.J., Jr. (2005). A practical false discovery rate approach to identifying patterns of differential expression in microarray data. Bioinformatics 21, 2684-2690.
    • (2005) Bioinformatics , vol.21 , pp. 2684-2690
    • Grant, G.R.1    Liu, J.2    Stoeckert Jr., C.J.3
  • 12
    • 0036845735 scopus 로고    scopus 로고
    • Redundant proteolytic mechanisms process seed storage proteins in the absence of seed-type members of the vacuolar processing enzyme family of cysteine proteases
    • Gruis, D.F., Selinger, D.A., Curran, J.M., and Jung, R. (2002). Redundant proteolytic mechanisms process seed storage proteins in the absence of seed-type members of the vacuolar processing enzyme family of cysteine proteases. Plant Cell 14, 2863-2882.
    • (2002) Plant Cell , vol.14 , pp. 2863-2882
    • Gruis, D.F.1    Selinger, D.A.2    Curran, J.M.3    Jung, R.4
  • 13
    • 0035109411 scopus 로고    scopus 로고
    • Negative interference of endogenous phytochrome B with phytochrome A function in Arabidopsis
    • Hennig, L., Poppe, C., Sweere, U., Martin, A., and Schäfer, E. (2001). Negative interference of endogenous phytochrome B with phytochrome A function in Arabidopsis. Plant Physiol. 125, 1036-1044.
    • (2001) Plant Physiol. , vol.125 , pp. 1036-1044
    • Hennig, L.1    Poppe, C.2    Sweere, U.3    Martin, A.4    Schäfer, E.5
  • 14
    • 12244268610 scopus 로고    scopus 로고
    • Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant
    • Hoth, S., Morgante, M., Sanchez, J.P., Hanafey, M.K., Tingey, S.V., and Chua, N.H. (2002). Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant. J. Cell Sci. 115, 4891-4900.
    • (2002) J. Cell Sci. , vol.115 , pp. 4891-4900
    • Hoth, S.1    Morgante, M.2    Sanchez, J.P.3    Hanafey, M.K.4    Tingey, S.V.5    Chua, N.H.6
  • 16
    • 0033536027 scopus 로고    scopus 로고
    • Beta-phaseolin gene activation is a two-step process: PvALF-facilitated chromatin modification followed by abscisic acid-mediated gene activation
    • Li, G., Bishop, K.J., Chandrasekharan, M.B., and Hall, T.C. (1999). Beta-phaseolin gene activation is a two-step process: PvALF-facilitated chromatin modification followed by abscisic acid-mediated gene activation. Proc. Natl. Acad. Sci. USA 96, 7104-7109.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 7104-7109
    • Li, G.1    Bishop, K.J.2    Chandrasekharan, M.B.3    Hall, T.C.4
  • 17
    • 0032516090 scopus 로고    scopus 로고
    • Architectural specificity in chromatin structure at the TATA box in vivo: Nucleosome displacement upon beta-phaseolin gene activation
    • Li, G., Chandler, S.P., Wolffe, A.P., and Hall, T.C. (1998). Architectural specificity in chromatin structure at the TATA box in vivo: Nucleosome displacement upon beta-phaseolin gene activation. Proc. Natl. Acad. Sci. USA 95, 4772-4777.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 4772-4777
    • Li, G.1    Chandler, S.P.2    Wolffe, A.P.3    Hall, T.C.4
  • 18
    • 0023654956 scopus 로고
    • Improved method for the isolation of RNA from plant tissues
    • Logemann, J., Schell, J., and Willmitzer, L. (1987). Improved method for the isolation of RNA from plant tissues. Anal. Biochem. 163, 16-20.
    • (1987) Anal. Biochem. , vol.163 , pp. 16-20
    • Logemann, J.1    Schell, J.2    Willmitzer, L.3
  • 20
    • 0035542770 scopus 로고    scopus 로고
    • Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways
    • Ma, L., Li, J., Qu, L., Hager, J., Chen, Z., Zhao, H., and Deng, X.W. (2001). Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. Plant Cell 13, 2589-2607.
    • (2001) Plant Cell , vol.13 , pp. 2589-2607
    • Ma, L.1    Li, J.2    Qu, L.3    Hager, J.4    Chen, Z.5    Zhao, H.6    Deng, X.W.7
  • 21
    • 0036010646 scopus 로고    scopus 로고
    • Functional properties and regulatory complexity of a minimal RBCS light-responsive unit activated by phytochrome, cryptochrome and plastid signals
    • Martinez-Hernandez, A., López-Ochoa, L., Arguello-Astorga, G., and Herrera-Estrella, L. (2002). Functional properties and regulatory complexity of a minimal RBCS light-responsive unit activated by phytochrome, cryptochrome and plastid signals. Plant Physiol. 128, 1223-1233.
    • (2002) Plant Physiol. , vol.128 , pp. 1223-1233
    • Martinez-Hernandez, A.1    López-Ochoa, L.2    Arguello-Astorga, G.3    Herrera-Estrella, L.4
  • 23
    • 70350344979 scopus 로고
    • Meteorological applications of permutation techniques based on distance functions
    • P.R. Krishnaiah and P.K. Sen, eds (Amsterdam: North-Holland)
    • Mielke, P.W., Jr. (1984). Meteorological applications of permutation techniques based on distance functions. In Handbook of Statistics, Vol. 4, P.R. Krishnaiah and P.K. Sen, eds (Amsterdam: North-Holland), pp. 813-830.
    • (1984) Handbook of Statistics , vol.4 , pp. 813-830
    • Mielke Jr., P.W.1
  • 24
    • 0028958548 scopus 로고
    • A regulatory role for the ABI3 gene in the establishment of embryo maturation in Arabidopsis
    • Nambara, E., Keith, K., McCourt, P., and Naito, S. (1995). A regulatory role for the ABI3 gene in the establishment of embryo maturation in Arabidopsis. Development 121, 629-686.
    • (1995) Development , vol.121 , pp. 629-686
    • Nambara, E.1    Keith, K.2    McCourt, P.3    Naito, S.4
  • 25
    • 1442281536 scopus 로고    scopus 로고
    • Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis
    • Ohgishi, M., Saji, K., Okada, K., and Sakai, T. (2004). Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis. Proc. Natl. Acad. Sci. USA 101, 2223-2228.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 2223-2228
    • Ohgishi, M.1    Saji, K.2    Okada, K.3    Sakai, T.4
  • 26
    • 0028534830 scopus 로고
    • Regulation of gene expression programs during Arabidopsis seed development: Roles of the ABI3 locus and of endogenous abscisic acid
    • Parcy, F., Valon, C., Raynal, M., Gaubier-Comella, P., Delseny, M., and Giraudat, J. (1994). Regulation of gene expression programs during Arabidopsis seed development: Roles of the ABI3 locus and of endogenous abscisic acid. Plant Cell 6, 1567-1582.
    • (1994) Plant Cell , vol.6 , pp. 1567-1582
    • Parcy, F.1    Valon, C.2    Raynal, M.3    Gaubier-Comella, P.4    Delseny, M.5    Giraudat, J.6
  • 28
    • 0029040034 scopus 로고
    • Phytochromes: Photosensory perception and signal transduction
    • Quail, P.M., Boylan, M.T., Parks, B.M., Short, T.W., Xu, Y., and Wagner, D. (1995). Phytochromes: Photosensory perception and signal transduction. Science 268, 675-680.
    • (1995) Science , vol.268 , pp. 675-680
    • Quail, P.M.1    Boylan, M.T.2    Parks, B.M.3    Short, T.W.4    Xu, Y.5    Wagner, D.6
  • 29
    • 0034070573 scopus 로고    scopus 로고
    • Gene regulation during late embryogenesis: The RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product
    • Reidt, W., Wohlfarth, T., Ellerström, M., Czihal, A., Tewes, A., Ezcurra, I., Rask, L., and Bäumlein, H. (2000). Gene regulation during late embryogenesis: The RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product. Plant J. 21, 401-408.
    • (2000) Plant J. , vol.21 , pp. 401-408
    • Reidt, W.1    Wohlfarth, T.2    Ellerström, M.3    Czihal, A.4    Tewes, A.5    Ezcurra, I.6    Rask, L.7    Bäumlein, H.8
  • 32
    • 0036671251 scopus 로고    scopus 로고
    • PtABI3 impinges on the growth and differentiation of embryonic leaves during bud set in poplar
    • Rohde, A., Prinse, E., De Rycke, R., Engler, G., Van Montagu, M., and Boerja, W. (2002). PtABI3 impinges on the growth and differentiation of embryonic leaves during bud set in poplar. Plant Cell 14, 1885-1901.
    • (2002) Plant Cell , vol.14 , pp. 1885-1901
    • Rohde, A.1    Prinse, E.2    De Rycke, R.3    Engler, G.4    Van Montagu, M.5    Boerja, W.6
  • 33
    • 0032912592 scopus 로고    scopus 로고
    • The ABSCISIC ACID-INSENSITIVE 3 (ABI3) gene is expressed during vegetative quiescence processes in Arabidopsis
    • Rohde, A., Van Montagu, M., and Boerjan, W. (1999). The ABSCISIC ACID-INSENSITIVE 3 (ABI3) gene is expressed during vegetative quiescence processes in Arabidopsis. Plant Cell Environ. 22, 117-123.
    • (1999) Plant Cell Environ. , vol.22 , pp. 117-123
    • Rohde, A.1    Van Montagu, M.2    Boerjan, W.3
  • 34
    • 0035983837 scopus 로고    scopus 로고
    • Contrapuntal networks of gene expression during Arabidopsis seed filling
    • Ruuska, S.A., Girke, T., Benningc, C., and Ohlrogge, J.B. (2002). Contrapuntal networks of gene expression during Arabidopsis seed filling. Plant Cell 14, 1191-1206.
    • (2002) Plant Cell , vol.14 , pp. 1191-1206
    • Ruuska, S.A.1    Girke, T.2    Benningc, C.3    Ohlrogge, J.B.4
  • 35
    • 0037015275 scopus 로고    scopus 로고
    • De-Etiolated 1 and Damaged DNA Binding Protein 1 interact to regulate Arabidopsis photomorphogenesis
    • Schroeder, D., Gahrtz, M., Maxwell, B., Cook, R.K., Kan, J., Alonso, J., Ecker, J., and Chory, J. (2002). De-Etiolated 1 and Damaged DNA Binding Protein 1 interact to regulate Arabidopsis photomorphogenesis. Curr. Biol. 12, 1462-1472.
    • (2002) Curr. Biol. , vol.12 , pp. 1462-1472
    • Schroeder, D.1    Gahrtz, M.2    Maxwell, B.3    Cook, R.K.4    Kan, J.5    Alonso, J.6    Ecker, J.7    Chory, J.8
  • 36
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance of genomewide studies
    • Storey, J.D., and Tibshirani, R. (2003). Statistical significance of genomewide studies. Proc. Natl. Acad. Sci. USA 100, 9440-9445.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 37
    • 0027214202 scopus 로고
    • Signal transduction mutants of Arabidopsis uncouple CAB and RBCS gene expression from chloroplast development
    • Susek, R.E., Ausubel, F.M., and Chory, J. (1993). Signal transduction mutants of Arabidopsis uncouple CAB and RBCS gene expression from chloroplast development. Cell 74, 787-799.
    • (1993) Cell , vol.74 , pp. 787-799
    • Susek, R.E.1    Ausubel, F.M.2    Chory, J.3
  • 38
    • 0038376557 scopus 로고    scopus 로고
    • Viviparous1 alters global gene expression patterns through regulation of abscisic acid signaling
    • Suzuki, M., Ketterling, M.G., Li, Q.B., and McCarty, D.R. (2003). Viviparous1 alters global gene expression patterns through regulation of abscisic acid signaling. Plant Physiol. 132, 1664-1677.
    • (2003) Plant Physiol. , vol.132 , pp. 1664-1677
    • Suzuki, M.1    Ketterling, M.G.2    Li, Q.B.3    McCarty, D.R.4
  • 39
    • 0035979317 scopus 로고    scopus 로고
    • Multiple transcription-factor genes are early targets of phytochrome a signaling
    • Tepperman, J.M., Zhu, T., Chang, H.S., Wang, X., and Quail, P.H. (2001). Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc. Natl. Acad. Sci. USA 98, 9437-9442.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9437-9442
    • Tepperman, J.M.1    Zhu, T.2    Chang, H.S.3    Wang, X.4    Quail, P.H.5
  • 40
    • 0036741191 scopus 로고    scopus 로고
    • Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis
    • Yadav, V., Kundu, S., Chattopadhyay, D., Negi, P., Wei, N., Deng, X.-W., and Chattopadhayay, S. (2002). Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis. Plant J. 31, 741-753.
    • (2002) Plant J. , vol.31 , pp. 741-753
    • Yadav, V.1    Kundu, S.2    Chattopadhyay, D.3    Negi, P.4    Wei, N.5    Deng, X.-W.6    Chattopadhayay, S.7
  • 41
    • 0031239429 scopus 로고    scopus 로고
    • The VLF loci, polymorphic between ecotypes Landsberg erecta and Columbia, dissect two branches of phytochrome a signalling pathways that correspond to the very-low-fluence and high-irradiance responses of phytochrome
    • Yanovsky, M.J., Casal, J.J., and Luppi, J.P. (1997). The VLF loci, polymorphic between ecotypes Landsberg erecta and Columbia, dissect two branches of phytochrome A signalling pathways that correspond to the very-low-fluence and high-irradiance responses of phytochrome. Plant J. 12, 659-667.
    • (1997) Plant J. , vol.12 , pp. 659-667
    • Yanovsky, M.J.1    Casal, J.J.2    Luppi, J.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.