메뉴 건너뛰기




Volumn 5, Issue 5, 2007, Pages 991-1004

Overlapping alternative donor splive sites in the human genome

Author keywords

Alternative splicing; Nonsense mediated decay; Splice sites; Untranslated isoforms

Indexed keywords

MESSENGER RNA;

EID: 35348886064     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720007003089     Document Type: Article
Times cited : (8)

References (25)
  • 2
    • 0037084825 scopus 로고    scopus 로고
    • Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human
    • Clark F, Thanaraj TA, Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human, Hum Mol Genet 11(4):451-464, 2002.
    • (2002) Hum Mol Genet , vol.11 , Issue.4 , pp. 451-464
    • Clark, F.1    Thanaraj, T.A.2
  • 3
    • 9644278038 scopus 로고    scopus 로고
    • Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity
    • Hiller M, Huse K, Szafranski K, Jahn N, Hampe J, Schreiber S, Backofen R, Platzer M, Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity, Nat Genet 36 12):1255-1257, 2004.
    • (2004) Nat Genet , vol.36 , Issue.12 , pp. 1255-1257
    • Hiller, M.1    Huse, K.2    Szafranski, K.3    Jahn, N.4    Hampe, J.5    Schreiber, S.6    Backofen, R.7    Platzer, M.8
  • 4
    • 31544473503 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms in NAGNAG acceptors are highly predictive for variations of alternative splicing
    • Hiller M, Huse K, Szafranski K, Jahn N, Hampe J, Schreiber S, Backofen R, Platzer M, Single-nucleotide polymorphisms in NAGNAG acceptors are highly predictive for variations of alternative splicing, Am J Hum Genet 78(2):291-302, 2006.
    • (2006) Am J Hum Genet , vol.78 , Issue.2 , pp. 291-302
    • Hiller, M.1    Huse, K.2    Szafranski, K.3    Jahn, N.4    Hampe, J.5    Schreiber, S.6    Backofen, R.7    Platzer, M.8
  • 5
    • 25444516516 scopus 로고    scopus 로고
    • Frequent occurrence of protein isoforms with or without a single amino acid residue by subtle alternative splicing: The case of Gln in DRPLA affects subcellular localization of the products
    • Tadokoro K, Yamazaki-Inoue M, Tachibana M, Fujishiro, M, Nagao K, Toyoda M, Ozaki M, Ono M, Miki N, Miyashita T, Yamada M, Frequent occurrence of protein isoforms with or without a single amino acid residue by subtle alternative splicing: The case of Gln in DRPLA affects subcellular localization of the products, J Hum Genet 50(8):382-394, 2005.
    • (2005) J Hum Genet , vol.50 , Issue.8 , pp. 382-394
    • Tadokoro, K.1    Yamazaki-Inoue, M.2    Tachibana, M.3    Fujishiro, M.4    Nagao, K.5    Toyoda, M.6    Ozaki, M.7    Ono, M.8    Miki, N.9    Miyashita, T.10    Yamada, M.11
  • 6
    • 31544461505 scopus 로고    scopus 로고
    • Alternative splicing regulation at tandem 3′ splice sites
    • Akerman M, Mandel-Gutfreund Y, Alternative splicing regulation at tandem 3′ splice sites, Nucleic Acids Res 34(1):23-31, 2006.
    • (2006) Nucleic Acids Res , vol.34 , Issue.1 , pp. 23-31
    • Akerman, M.1    Mandel-Gutfreund, Y.2
  • 8
    • 0028244050 scopus 로고
    • Two alternatively spliced forms of the human insulin-like growth factor I receptor have distinct biological activities and internalization kinetics
    • Condorelli G, Bueno R, Smith RJ, Two alternatively spliced forms of the human insulin-like growth factor I receptor have distinct biological activities and internalization kinetics, J Biol Chem 269 11):8510-8516, 1994.
    • (1994) J Biol Chem , vol.269 , Issue.11 , pp. 8510-8516
    • Condorelli, G.1    Bueno, R.2    Smith, R.J.3
  • 9
    • 2442694425 scopus 로고    scopus 로고
    • Transcriptome and genome conservation of alternative splicing events in humans and mice
    • Sugnet CW, Kent WJ, Ares M Jr, Haussler D, Transcriptome and genome conservation of alternative splicing events in humans and mice, Pac Symp Biocomput 9:66-77, 2004.
    • (2004) Pac Symp Biocomput , vol.9 , pp. 66-77
    • Sugnet, C.W.1    Kent, W.J.2    Ares Jr, M.3    Haussler, D.4
  • 11
    • 33751355666 scopus 로고    scopus 로고
    • Alternative splicing at NAGNAG acceptors: Simply noise or noise and more?
    • Hiller M, Szafranski K, Backofen R, Platzer M, Alternative splicing at NAGNAG acceptors: Simply noise or noise and more?, PLoS Genet 2 11):e207, 2006.
    • (2006) PLoS Genet , vol.2 , Issue.11
    • Hiller, M.1    Szafranski, K.2    Backofen, R.3    Platzer, M.4
  • 12
    • 0032825040 scopus 로고    scopus 로고
    • Alternative nonallelic deletion is constitutive of ruminant alpha(s1)-casein
    • Ferranti P, Lilla S, Chianese L, Addeo F, Alternative nonallelic deletion is constitutive of ruminant alpha(s1)-casein, J Protein Chem 18(5):595-602, 1999.
    • (1999) J Protein Chem , vol.18 , Issue.5 , pp. 595-602
    • Ferranti, P.1    Lilla, S.2    Chianese, L.3    Addeo, F.4
  • 13
    • 0034923477 scopus 로고    scopus 로고
    • Alternative splicing of prosystemin pre-mRNA produces two isoforms that are active as signals in the wound response pathway
    • Li L, Howe GA, Alternative splicing of prosystemin pre-mRNA produces two isoforms that are active as signals in the wound response pathway, Plant Mol Biol 46(4):469-419, 2001.
    • (2001) Plant Mol Biol , vol.46 , Issue.4 , pp. 469-419
    • Li, L.1    Howe, G.A.2
  • 14
    • 0029860454 scopus 로고    scopus 로고
    • An alternative splicing event in the Pax-3 paired domain identifies the linker region as a key determinant of paired domain. DNA-binding activity
    • Vogan KJ, Underhill DA, Gros P, An alternative splicing event in the Pax-3 paired domain identifies the linker region as a key determinant of paired domain. DNA-binding activity, Mol Cell Biol 16 12):6677-6686, 1996.
    • (1996) Mol Cell Biol , vol.16 , Issue.12 , pp. 6677-6686
    • Vogan, K.J.1    Underhill, D.A.2    Gros, P.3
  • 16
    • 0024374945 scopus 로고
    • Statistical analysis of mammalian pre-mRNA splicing sites
    • Gelfand MS, Statistical analysis of mammalian pre-mRNA splicing sites, Nucleic Acids Res 17(15):6369-6382, 1989.
    • (1989) Nucleic Acids Res , vol.17 , Issue.15 , pp. 6369-6382
    • Gelfand, M.S.1
  • 18
    • 28644447707 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    • Lindblad-Toh K, Wade CM, Mikkelsen TS et al., Genome sequence, comparative analysis and haplotype structure of the domestic dog, Nature 438(7069):803-819, 2005.
    • (2005) Nature , vol.438 , Issue.7069 , pp. 803-819
    • Lindblad-Toh, K.1    Wade, C.M.2    Mikkelsen, T.S.3
  • 19
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent WJ, BLAT - The BLAST-like alignment tool, Genome Res 12 4):656-664, 2002.
    • (2002) Genome Res , vol.12 , Issue.4 , pp. 656-664
    • Kent, W.J.1
  • 20
    • 0035177648 scopus 로고    scopus 로고
    • Gene recognition in eukaryotic DNA by comparison of genomic sequences
    • Novichkov PS, Gelfand MS, Mironov AA, Gene recognition in eukaryotic DNA by comparison of genomic sequences, Bioinformatics 17 11):1011-1018, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.11 , pp. 1011-1018
    • Novichkov, P.S.1    Gelfand, M.S.2    Mironov, A.A.3
  • 22
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis BP, Green RE, Brenner SE, Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans, Proc Natl Acad Sci USA 100(1):189-192, 2003.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.1 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 23
    • 0034141782 scopus 로고    scopus 로고
    • Prediction of transcription regulatory sites in Archaea by a comparative genomic approach
    • Gelfand MS, Koonin EV, Mironov AA, Prediction of transcription regulatory sites in Archaea by a comparative genomic approach, Nucleic Acids Res 28(3):695-705, 2000.
    • (2000) Nucleic Acids Res , vol.28 , Issue.3 , pp. 695-705
    • Gelfand, M.S.1    Koonin, E.V.2    Mironov, A.A.3
  • 24
    • 35348817212 scopus 로고    scopus 로고
    • WebLogo [http://weblogo.berkeley.edu/].
    • WebLogo
  • 25
    • 35348826003 scopus 로고    scopus 로고
    • R [http://www.r-project.org].
    • R [http://www.r-project.org].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.