A new esterase showing similarity to putative dienelactone hydrolase from a strict marine bacterium, Vibrio sp. GMD509

Applied Microbiology and Biotechnology

Volumn 77, Issue 1, 2007, Pages 107-115

  Park, Sang Yi ^a,b   Kim, Jun Tae ^a   Kang, Sung Gyun ^a   Woo, Jung Hee ^a   Lee, Jung Hyun ^a   Choi, Hyoung Tae ^b   Kim, Sang Jin ^a  

^a Korea Research Institute of Ships and Ocean Engineering   (South Korea)

^b Kangwon National University   (South Korea)

Author keywords

Dienelactone hydrolase; Lipase esterase; Marine microorganism; Screening; Vibrio

Indexed keywords

DIENELACTONE HYDROLASE; MARINE MICROORGANISM; PHYLOGENETIC ANALYSIS; RACEMIC OFLOXACIN ESTER;

AMINO ACIDS; BACTERIA; HYDROLYSIS; KINETIC PARAMETERS; MARINE BIOLOGY; PROTEINS;

ENZYME ACTIVITY;

BUTYRIC ACID 4 NITROPHENYL ESTER; BUTYRIC ACID DERIVATIVE; CARBOXYMETHYLENEBUTENOLIDASE; ESTER DERIVATIVE; ESTERASE; HYDROLASE; NITRO DERIVATIVE; TRIACYLGLYCEROL LIPASE; TRIBUTYRIN; UNCLASSIFIED DRUG;

BACTERIUM; CLONE; ENZYME ACTIVITY; GASTROPOD; MARINE ENVIRONMENT; PHYLOGENY;

AMINO ACID SEQUENCE; ARTICLE; BACTERIUM ISOLATION; EGG; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME PURIFICATION; ESCHERICHIA COLI; GENETIC CONSERVATION; HYDROLYSIS; LIPOLYSIS; MARINE BACTERIUM; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PH; PHYLOGENY; PROTEIN EXPRESSION; PROTEIN FAMILY; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE; VIBRIO;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CARBOXYLIC ESTER HYDROLASES; CLONING, MOLECULAR; DNA, BACTERIAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESTERASES; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; STEREOISOMERISM; SUBSTRATE SPECIFICITY; TEMPERATURE; VIBRIO;

ANASPIDEA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; VIBRIO; VIBRIO SP.;

EID: 35348843459     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-1134-2     Document Type: Article

References (39)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Arpigny JL, Jaeger KE (1999) Bacterial lipolytic enzymes: classification and properties. Biochem J 343:177-183
3. Bornscheuer UT (2002) Microbial carboxyl esterases: classification, properties and application in biocatalysis. FEMS Microbiol Rev 26:73-81
4. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
5. Bruckmann M, Blasco R, Timmis KN, Pieper DH (1998) Detoxification of protoanemonin by dienelactone hydrolase. J Bacteriol 180:400-402
6. Burton SG, Cowan DA, Woodley JM (2002) The search for the ideal biocatalyst. Nat Biotechnol 20:37-45
7. Castro-Ochoa LD, Rodriguez-Gomez C, Valerio-Alfaro G, Ros RO (2005) Screening, purification and characterization of the thermoalkalophilic lipase produced by Bacillus thermoleovorans CCR11. Enzyme Microb Technol 37:648-654
8. Chen CS, Fujimoto Y, Girdaukas G, Sih CJ (1982) Quantitative analyses of biochemical kinetic resolutions of enantiomers. J Am Chem Soc 104:7294-7299
9. Choo DW, Kurihara T, Suzuki T, Soda K, Esaki N (1998) A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. Strain B11-1: gene cloning and enzyme purification and characterization. Appl Environ Microbiol 64:486-491
10. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL (1999) Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27:4636-4641
11. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
12. Holmquist M (2000) Alpha/Beta-hydrolase fold enzymes: structures, functions and mechanisms. Current Protein and Peptide Science 1:209-235
13. Jaeger KE, Dijkstra BW, Reetz MT (1999) Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases. Annu Rev Microbiol 53:315-351
14. Kim HK, Nab HS, Park MS, Oh TK, Lee TS (2004) Occurrence of ofloxacin ester-hydrolyzing esterase from Bacillus niacini EM001. J Mol Catal B Enzym 27:237-241
15. Kim YJ, Choi GS, Kim SB, Yoon GS, Kim YS, Ryu YW (2006) Screening and characterization of a novel esterase from a metagenomic library. Protein Expr Purif 45:315-323
16. Kim JT, Kang SG, Woo JH, Lee JH, Jeong BC, Kim SJ (2007) Screening and its potential application of lipolytic activity from a marine environment: characterization of a novel esterase from Yarrowia lipolytica CL180. Appl Microbiol Biotechnol 74:820-828
17. Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
18. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685
19. Lee SH, Choi JI, Park SJ, Lee SY, Park BC (2004) Display of bacterial lipase on the Escherichia coli cell Surface by using FadL as an anchoring motif and use of the enzyme in enantioselective biocatalysis. Appl Environ Microbiol 70:5074-5080
20. Manco G, Adinolfi E, Pisani FM, Ottolina G, Carrea G, Rossi M (1998) Overexpression and properties of a new thermophilic and thermostable esterase from Bacillus acidocaldarius with sequence similarity to hormone sensitive lipase subfamily. Biochem J 332:203-212
21. Mohandass C, Raghukumar C (2005) Biological deinking of inkjet-printed paper using Vibrio alginolyticus and its enzymes. J Ind Microbiol Biotech 32:424-429
22. Nardini M, Dijkstra BW (1999) α/β Hydrolase fold enzymes: the family keeps growing. Curr Opin Struct Biol 9:732-737
23. Ngai KL, Schlomann M, Knackmuss HJ, Ornston LN (1987) Dienelactone hydrolase from Pseudomonas sp. Strain B13. J Bacteriol 169:699-703
24. Nishimura A, Morita M, Nishimura Y, Sugino Y (1990) A rapid and highly efficient method for preparation of competent Escherichia coli cells. Nucleic Acids Res 18:6169
25. Pleiss J, Fischer M, Peiker M, Thiele C, Schmid RD (2000) Lipase engineering database understanding and exploiting sequence-structure-function relationships. J Mol Catal B Enzym 10:491-508
26. Rashid N, Shimada Y, Ezaki S, Atomi H, Imanaka T (2001) Low-temperature lipase from psychrotrophic Pseudomonas sp. strain KB700A. Appl Environ Microbiol 67:4064-4069
27. Rasool S, Johri S, Riyaz-ul-Hassan S, Maqbool QU, Verma V, Koul S, Taneja SC, Qazi GN (2005) Molecular cloning of enantioselective ester hydrolase from Bacillus pumilus DBRL-191. FEMS Microbiol Lett 249:113-120
28. Rhee JK, Ahn DG, Kim YG, Oh JW (2005) New thermophilic and thermostable esterase with sequence similarity to the hormone-sensitive lipase family, cloned from a metagenomic library. Appl Environ Microbiol 71:817-825
29. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
30. Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
31. Schlomann M, Schmidt E, Knackmuss HJ (1990) Different types of dienelactone hydrolase in 4-fluorobenzoate-utilizing bacteria. J Bacteriol 172:5112-5118
32. Schlomann M, Ngai KL, Ornston LN, Knackmuss HJ (1993) Dienelactone hydrolase from Pseudomonas cepacia. J Bacteriol 175:2994-3001
33. Seo HJ, Bae SS, Yang SH, Lee JH, Kim SJ (2005) Photobacterium aplysiae sp. nov., a lipolytic marine bacterium isolated from eggs of the sea hare Aplysia kurodai. Int J Syst Evol Microbiol 55:2293-2296
34. Sharmaa R, Chistib Y, Banerjee UC (2001) Production, purification, characterization, and applications of lipases. Biotechnol Adv 19:627-662
35. Thomas SM, DiCosimo R, Nagarajan V (2002) Biocatalysis: applications and potentials for the chemical industry. Trends Biotechnol 20:238-242
36. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
37. Vandenberghea J, Thompson FL, Gomez-Gilb B, Swingsa J (2003) Phenotypic diversity amongst Vibrio isolates from marine aquaculture systems. Aquaculture 219:9-20
38. Wagner UG, Petersen EI, Schwab H, Kratky C (2002) EstB from Burkholderia gladioli: a novel esterase with a β-lactamase fold reveals steric factors to discriminate between esterolytic and β-lactam cleaving activity. Protein Sci 11:467-478
39. Woo J-H, Hwang Y-O, Kang SG, Lee HS, Cho J-C, Kim S-J (2007) Cloning and characterization of three epoxide hydrolases from a marine bacterium, Erythrobacter litoralis HTCC2594. Appl Microbiol Biotechnol 76:365-375