Photobacterium aplysiae sp. nov., a lipolytic marine bacterium isolated from eggs of the sea hare Aplysia kurodai

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 6, 2005, Pages 2293-2296

  Seo, Hae Jeom ^a   Bae, Seung Seob ^a   Yang, Sung Hyun ^a   Lee, Jung Hyun ^a   Kim, Sang Jin ^a  

^a Korea Research Institute of Ships and Ocean Engineering   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GUANINE; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; CULTURE MEDIUM; DNA CONTENT; DNA DNA HYBRIDIZATION; GRAM NEGATIVE FACULTATIVELY ANAEROBIC RODS; HALOPHILIC BACTERIUM; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOBACTERIUM; PHOTOBACTERIUM APLYSIAE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTH KOREA; SPECIES DIFFERENTIATION;

ANIMALS; APLYSIA; DNA, BACTERIAL; FATTY ACIDS; MARINE BIOLOGY; MOLECULAR SEQUENCE DATA; OVUM; PHOTOBACTERIUM; RNA, RIBOSOMAL, 16S;

ANASPIDEA; APLYSIA KURODAI; BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; HYPHOMICROBIUM INDICUM; NEGIBACTERIA; PHOTOBACTERIUM; PHOTOBACTERIUM PROFUNDUM;

EID: 27844468097     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63765-0     Document Type: Article

References (22)

1. Bae, S. S., Lee, J.-H. & Kim, S.-J. (2005). Bacillus alveayuensis sp. nov., a thermophilic bacterium isolated from deep-sea sediments of the Ayu Trough. Int J Syst Evol Microbiol 55, 1211-1215.
2. Beijerinck, M. W. (1889). Le Photobacterium luminosum. Bactérie lumineuse do la Mer du Nord. Arch Neerl Sci Exactes Nat 23, 401-427.
3. Boisvert, H., Chatelain, R. & Bassot, J.-M. (1967). Étude d'un Photobacterium isolé de l'organe lumineux de poissons Leiognathidae. Ann Inst Pasteur (Paris) 112, 520-524.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Department of Genome Sciences, University of Washington, Seattle, USA.
7. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
8. Gauthier, G., Lafay, B., Ruimy, R., Breittmayer, V., Nicolas, J. L., Gauthier, M. & Christen, R. (1995). Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. Int J Syst Bacteriol 45, 139-144.
9. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
10. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
11. Nogi, Y., Masui, N. & Kato, C. (1998). Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2, 1-7.
12. Onarheim, A. M., Wiik, R., Burghardt, J. & Stackebrandt, E. (1994). Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water; description of Vibrio iliopiscarius sp. nov. Syst Appl Microbiol 17, 370-379.
13. Reichelt, J. L. & Baumann, P. (1973). Taxonomy of the marine, luminous bacteria. Arch Mikrobiol 94, 283-330.
14. Reichelt, J. L., Baumann, P. & Baumann, L. (1976). Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization. Arch Microbiol 110, 101-120.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Seo, H. J., Bae, S. S., Lee, J.-H. & Kim, S.-J. (2005). Photobacterium frigidiphilum sp. nov., a psychrophilic, lipolytic bacterium isolated from deep-sea sediments of Edison Seamount. Int J Syst Evol Microbiol 55, 1661-1666.
17. Smith, S. K., Sutton, D. C., Fuerst, J. A. & Reichelt, J. L. (1991). Evaluation of the genus Listonella and reassignment of Listonella damsela (Love et al.) MacDonell and Colwell to the genus Photobacterium as Photobacterium damsela comb. nov. with an emended description. Int J Syst Bacteriol 41, 529-534.
18. Sohn, J. H., Lee, J.-H., Yi, H., Chun, J., Bae, K. S., Ahn, T.-Y. & Kim, S.-J. (2004). Kordia algicida gen. nov., sp. nov., an algicidal bacterium isolated from red tide. Int J Syst Evol Microbiol 54, 675-680.
19. Thompson, F. L., Thompson, C. C., Naser, S., Hoste, B., Vandemeulebroecke, K., Munn, C., Bourne, D. & Swings, J. (2005). Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching. Int J Syst Evol Microbiol 55, 913-917.
20. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
21. Xie, C.-H. & Yokota, A. (2004). Transfer of Hyphomicrobium indicum to the genus Photobacterium as Photobacterium indicum comb. nov. Int J Syst Evol Microbiol 54, 2113-2116.
22. Yoon, J.-H., Lee, J.-K., Kim, Y.-O. & Oh, T.-K. (2005). Photobacterium lipolyticum sp. nov., a bacterium with lipolytic activity isolated from the Yellow Sea in Korea. Int J Syst Evol Microbiol 55, 335-339.