Discovery of herpesviruses in multi-infected primates using locked nucleic acids (LNA) and a bigenic PCR approach

Virology Journal

Volumn 4, Issue , 2007, Pages

  Prepens, Sandra ^a   Kreuzer, Karl Anton ^b   Leendertz, Fabian ^a,c   Nitsche, Andreas ^a   Ehlers, Bernhard ^a  

^a ROBERT KOCH INSTITUTE   (Germany)

^b Molekulare Tumorbiologie und Tumorimmunologie   (Germany)

^c MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; GLYCOPROTEIN B; LOCKED NUCLEIC ACID; OLIGONUCLEOTIDE; DNA DIRECTED DNA POLYMERASE; DNA POLYMERASE, SIMPLEXVIRUS; EXODEOXYRIBONUCLEASE; GLYCOPROTEIN; PRIMER DNA; UNCLASSIFIED DRUG; VIRUS DNA; VIRUS PROTEIN;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; CYTOMEGALOVIRUS; GENE AMPLIFICATION; GENE REPRESSION; GENE SEQUENCE; HERPES VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIMATE; RHADINOVIRUS; VIRUS DETECTION; VIRUS INFECTION; ANIMAL; ANIMAL DISEASE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; HERPES VIRUS INFECTION; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; PRIMATE DISEASE; VIROLOGY;

CYTOMEGALOVIRUS; HERPES; HERPESVIRIDAE; LYMPHOCRYPTOVIRUS; PRIMATES; RHADINOVIRUS; VERTEBRATA;

ANIMALS; CLUSTER ANALYSIS; DNA PRIMERS; DNA, VIRAL; DNA-DIRECTED DNA POLYMERASE; EXODEOXYRIBONUCLEASES; GLYCOPROTEINS; HERPESVIRIDAE; HERPESVIRIDAE INFECTIONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIMATE DISEASES; PRIMATES; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS; VIRAL STRUCTURAL PROTEINS; VIROLOGY;

EID: 35248821102     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-4-84     Document Type: Article

References (35)

1. Detection and Analysis of diverse herpesviral species by consensus primer PCR. DR VanDevanter P Warrener L Bennett ER Schultz S Coulter RL Garber TM Rose, J Clin Microbiol 1996 34 1666 1676 8784566
2. Detection of new DNA polymerase genes of known and potentially novel herpesviruses by PCR with degenerate and deoxyinosine- substituted primers. B Ehlers K Borchers C Grund K Frölich H Ludwig H-J Buhk, Virus Genes 1999 18 211 220 10.1023/A:1008064118057 10456789
3. CODEHOP-mediated PCR - a powerful technique for the identification and characterization of viral genomes. TM Rose, Virology J 2005 2 20 10.1186/1743-422X-2-20
4. Detection of two novel porcine herpesviruses with high similarity to gammaherpesviruses. B Ehlers S Ulrich M Goltz, J Gen Virol 1999 80 971 978 10211967
5. KSHV-like herpesviruses in chimps and gorillas. V Lacoste P Mauclere G Dubreuil J Lewis MC Georges-Courbot A Gessain, Nature 2000 407 151 152 10.1038/35025145 11001045
6. Detection and multigenic characterization of a novel gammaherpesvirus in goats. B Chmielewicz M Goltz B Ehlers, Virus Res 2001 75 87 94 10.1016/S0168-1702(00)00252-5 11311431
7. Novel simian homologues of Epstein-Barr virus. B Ehlers A Ochs F Leendertz M Goltz C Boesch K Mätz-Rensing, J Virol 2003 77 10695 10699 12970457 10.1128/JVI.77.19.10695-10699.2003
8. A novel subgroup of rhadinoviruses in ruminants. H Li K Gailbreath EJ Flach NS Taus J Cooley J Keller GC Russell DP Knowles DM Haig JL Oaks DL Traul TB Crawford, J Gen Virol 2005 86 3021 3026 10.1099/vir.0.81238-0 16227223
9. A novel porcine gammaherpesvirus. B Chmielewicz M Goltz T Franz C Bauer S Brema H Ellerbrok S Beckmann H-J Rziha K-H Lahrmann C Romero B Ehlers, Virology 2003 308 317 329 10.1016/S0042-6822(03)00006-0 12706081
10. Infection of pigs in Ireland with lymphotropic gammaherpesviruses and relationship to postweaning multisystemic wasting syndrome. KJ McMahon D Minihan EM Campion ST Loughran G Allan F McNeilly D Walls, Vet Microbiol 2006 116 60 68 10.1016/j.vetmic.2006.03.022 16672182
11. Detection of two novel porcine herpesviruses with high similarity to gammaherpesviruses. B Ehlers S Ulrich M Goltz, J Gen Virol 1999 80 971 978 10211967
12. The conformations of locked nucleic acids (LNA). M Petersen CB Nielsen KE Nielsen GA Jensen K Bondensgaard SK Singh VK Rajwanshi AA Koshkin BM Dahl J Wengel JP Jacobsen, J Mol Recognit 2000 13 44 53 10.1002/(SICI)1099-1352(200001/ 02)13:1<44::AID-JMR486>3.0.CO;2-6 10679896
13. Conformationally locked nucleosides. Synthesis and hybridization properties of ligodeoxynucleotides containing 2'-, 4'-C-bridged 2'-deoxynucleosides. G Wang E Gunic J Girardet V Stoisavljevic, Bioorg Med Chem Lett 1999 9 1147 1150 10.1016/S0960-894X(99)00146-8 10328302
14. LNA: a versatile tool for therapeutics and genomics. M Petersen J Wengel, Trends Biotechnol 2003 21 74 81 10.1016/S0167-7799(02)00038-0 12573856
15. Locked nucleic acid inhibits amplification of contaminating DNA in real-time PCR. L Hummelshoj LP Ryder HO Madsen LK Poulsen, Biotechniques 2005 38 605 610 15884678
16. Characterization of the DNA polymerase loci of the novel porcine lymphotropic herpesviruses 1 and 2 in domestic and feral pigs. S Ulrich M Goltz B Ehlers, J Gen Virol 1999 80 3199 3206 10567652
17. Complete genomic sequence of an Epstein-Barr virus-related herpesvirus naturally infecting a new world primate: a defining point in the evolution of oncogenic lymphocryptoviruses. P Rivailler YG Cho F Wang, J Virol 2002 76 12055 68 12414947 10.1128/JVI.76.23.12055-12068.2002
18. Sequence analysis of the genome of porcine lymphotropic herpesvirus 1 and gene expression during post-transplant lymphoproliferative disease of pigs. M Goltz T Ericsson C Patience CA Huang S Noack DH Sachs B Ehlers, Virology 2002 294 383 393 10.1006/viro.2002.1390 12009880
19. Anthrax kills wild chimpanzees in a tropical rainforest. FH Leendertz H Ellerbrok C Boesch E Couacy-Hymann K Mätz-Rensing R Hakenbeck C Bergmann P Abaza S Junglen Y Moebius L Vigilant P Formenty G Pauli, Nature 2004 430 451 452 10.1038/nature02722 15269768
20. A chimpanzee rhadinovirus sequence related to Kaposi's sarcomaassociated herpesvirus/human herpesvirus 8: increased detection after HIV-1 infection in the absence of disease. J Greensill JA Sheldon KK Murthy JS Bessonette BE Beer TF Schulz, AIDS 2000 14 129 135 10.1097/00002030-200012010-00001
21. A novel gamma 2-herpesvirus of the Rhadinovirus 2 lineage in chimpanzees. V Lacoste P Mauclere G Dubreuil J Lewis MC Georges-Courbot A Gessain, Genome Res 2001 11 1511 1519 11544194 10.1101/gr.158601
22. Identification of two homologs of the Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8) in retroperitoneal fibromatosis of different macaque species. TM Rose KB Strand ER Schultz G Schaefer GW Rankin Jr ME Thouless CC Tsai ML Bosch, J Virol 1997 71 4138 4144 9094697
23. Two distinct lineages of macaque gamma herpesviruses related to the Kaposi's sarcoma associated herpesvirus. K Strand E Harper S Thormahlen ME Thouless C Tsai T Rose ML Bosch, J Clin Virol 2000 16 253 269 10.1016/S1386-6532(99)00080-3 10738144
24. Comparisons of nuclear antigens of Epstein-Barr virus (EBV) and EBV-like simian viruses. H Rabin BC Strnad RH Neubauer AM Brown RF Hopkins 3rd RA Mazur, J Gen Virol 1980 48 265 272 6156993
25. Phylogenetic relationships in the Lymphocryptovirus genus of the Gammaherpesvirinae. CS Gerner A Dolan DJ McGeoch, Virus Res 2004 99 187 192 10.1016/j.virusres.2003.10.011 14749184
26. Characterization of two divergent lineages of macaque rhadinoviruses related to Kaposi's sarcoma-associated herpesvirus. ER Schultz GW Rankin Jr MP Blanc BW Raden CC Tsai TM Rose, J Virol 2000 74 4919 4928 10775636 10.1128/JVI.74.10.4919-4928.2000
27. Design of LNA probes that improve mismatch discrimination. Y You BG Moreira MA Behlke R Owczarzy, Nucleic Acids Res 2006 34 e60 16670427 10.1093/nar/gkl175
28. Novel herpesviruses of Suidae: indicators for a second genogroup of artiodactyl gammaherpesviruses. B Ehlers S Lowden, J Gen Virol 2004 85 857 862 10.1099/vir.0.79799-0 15039528
29. Association of human herpesvirus 6 reactivation with severe cytomegalovirus-associated disease in orthotopic liver transplant recipients. JA DesJardin E Cho S Supran L Gibbons BG Werner DR Snydman, Clin Infect Dis 2001 33 1358 1362 10.1086/323336 11565077
30. Human herpesviruses 6 and 7 as potential pathogens after liver transplant: prospective comparison with the effect of cytomegalovirus. PD Griffiths M Ait-Khaled CP Bearcroft DA Clark A Quaglia SE Davies AK Burroughs K Rolles IM Kidd SN Knight SM Noibi AV Cope AN Phillips VC Emery, J Med Virol 1999 59 496 501 10.1002/(SICI)1096-9071(199912)59:4<496::AID-JMV12>3.0.CO;2-U 10534732
31. Epstein-Barr virus and human herpesvirus 8 coinfection and concomitant extranodal nasal-type NK/T cell lymphoma and Castleman disease: case report. C Larroche F Agbalika H Poirel A Martin A Gautheret-Dejean M Raphael O Lortholary, Clin Infect Dis 2003 36 e107 110 10.1086/374663 12715327
32. Impact of human herpesvirus-6 after haematopoietic stem cell transplantation. M Hentrich D Oruzio G Jager M Schlemmer M Schleuning X Schiel W Hiddemann HJ Kolb, Brit J Haematol 2005 128 66 72 10.1111/j.1365-2141.2004. 05254.x
33. Mixed cytomegalovirus glycoprotein B genotypes in immunocompromised patients. A Coaquette A Bourgeois C Dirand A Varin W Chen G Herbein, Clin Infect Dis 2004 39 155 161 10.1086/421496 15307021
34. Genetic polymorphisms among human cytomegalovirus (HCMV) wild-type strains. S Pignatelli P Dal Monte G Rossini MP Landini, Rev Med Virol 2004 14 383 410 10.1002/rmv.438 15386592
35. Pathogens as Drivers of Population Declines: The Importance of Systematic Monitoring in Great Apes and Other Threatened Mammals. FH Leendertz G Pauli K Maetz-Rensing W Boardman C Nunn H Ellerbrok SA Jensen S Junglen C Boesch, Biological Conservation 2006 131 325 337 10.1016/j.biocon.2006.05.002