-
1
-
-
4243687930
-
Estimation of haplotype frequencies fromdiploid data
-
G.R. Abecasis, R. Martin, and S. Lewitzky. Estimation of haplotype frequencies fromdiploid data. American Journal of Human Genetics, 69(4 Suppl. 1):114, 2001.
-
(2001)
American Journal of Human Genetics
, vol.69
, Issue.4 SUPPL. 1
, pp. 114
-
-
Abecasis, G.R.1
Martin, R.2
Lewitzky, S.3
-
2
-
-
0038219512
-
Haplotyping as a perfect phylogeny. A direct approach
-
V. Bafna, D. Gusfield, G. Lancia, and S. Yooseph. Haplotyping as a perfect phylogeny. A direct approach. Journal of Computational Biology, 10(3):323-340, 2003.
-
(2003)
Journal of Computational Biology
, vol.10
, Issue.3
, pp. 323-340
-
-
Bafna, V.1
Gusfield, D.2
Lancia, G.3
Yooseph, S.4
-
3
-
-
85010120898
-
Two strikes against perfect phylogeny
-
Lecture Notes in Computer Science, pringer Verlag
-
H. Bodlaender, M. Fellows, and T. Warnow. Two strikes against perfect phylogeny. In Proceedings of the 19th International Colloquium on Automata, Languages, and Programming (ICALP), Lecture Notes in Computer Science, pages 273-283. Springer Verlag, 1992.
-
(1992)
Proceedings of the 19th International Colloquium on Automata, Languages, and Programming (ICALP)
, pp. 273-283
-
-
Bodlaender, H.1
Fellows, M.2
Warnow, T.3
-
5
-
-
0001217760
-
A combinatorial proof of the all-minors matrix tree theorem
-
S. Chaiken. A combinatorial proof of the all-minors matrix tree theorem. SIAM Journal on Algebraic and Discrete Methods, 3:319-329, 1982.
-
(1982)
SIAM Journal on Algebraic and Discrete Methods
, vol.3
, pp. 319-329
-
-
Chaiken, S.1
-
7
-
-
0025269067
-
Inference of haplotypes from PCR-amplified samples of diploid populations
-
A. G. Clark. Inference of haplotypes from PCR-amplified samples of diploid populations. Molecular Biology and Evolution, 7(2):111-122, 1990.
-
(1990)
Molecular Biology and Evolution
, vol.7
, Issue.2
, pp. 111-122
-
-
Clark, A.G.1
-
9
-
-
0034791035
-
High-resolution haplotype structure in the human genome
-
M. J. Daly, J. D. Rioux, S. F. Schaffner, T. J. Hudson, and E. S. Lander. High-resolution haplotype structure in the human genome. Nature Genetics, 29:229-232, 2001.
-
(2001)
Nature Genetics
, vol.29
, pp. 229-232
-
-
Daly, M.J.1
Rioux, J.D.2
Schaffner, S.F.3
Hudson, T.J.4
Lander, E.S.5
-
11
-
-
0004485904
-
Computational complexity of inferring phylogenies by compatibility
-
W. H. E. Day and D. SankofF. Computational complexity of inferring phylogenies by compatibility. Systematic Zoology, 35(2):224-229, 1986.
-
(1986)
Systematic Zoology
, vol.35
, Issue.2
, pp. 224-229
-
-
Day, W.H.E.1
Sankoff, D.2
-
15
-
-
0029130796
-
Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
-
L. Excoffier and M. Slatkin. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Molecular Biology and Evolution, 12(5):921-927, 1995.
-
(1995)
Molecular Biology and Evolution
, vol.12
, Issue.5
, pp. 921-927
-
-
Excoffier, L.1
Slatkin, M.2
-
16
-
-
0033794938
-
Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
-
D. Fallin and N.J. Schork. Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data. American Journal of Human Genetics, 67(4):947-59, 2000.
-
(2000)
American Journal of Human Genetics
, vol.67
, Issue.4
, pp. 947-959
-
-
Fallin, D.1
Schork, N.J.2
-
17
-
-
0034835229
-
Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels
-
L. Frisse, R. Hudson, A. Bartoszewicz, J. Wall, T. Donfalk, and A. Di Rienzo. Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. American Journal of Human Genetics, 69:831-843, 2001.
-
(2001)
American Journal of Human Genetics
, vol.69
, pp. 831-843
-
-
Frisse, L.1
Hudson, R.2
Bartoszewicz, A.3
Wall, J.4
Donfalk, T.5
Di Rienzo, A.6
-
20
-
-
0034812677
-
Inference of haplotypes from samples of diploid populations: Complexity and algorithms
-
D. Gusfield. Inference of haplotypes from samples of diploid populations: Complexity and algorithms. Journal of Computational Biology, 8(3):305-324, 2001.
-
(2001)
Journal of Computational Biology
, vol.8
, Issue.3
, pp. 305-324
-
-
Gusfield, D.1
-
24
-
-
0029372419
-
A program using the em algorithm to estimate the frequencies of multi-site haplotypes
-
M. E. Hawley and K. K. Kidd. HAPLO: A program using the EM algorithm to estimate the frequencies of multi-site haplotypes. Journal of Heredity, 86:409-411, 1995.
-
(1995)
Journal of Heredity
, vol.86
, pp. 409-411
-
-
Hawley, M.E.1
Kidd Haplo, K.K.2
-
25
-
-
0035958749
-
Genome research: Map of the human genome 3.0
-
L. Helmuth. Genome research: Map of the human genome 3.0. Science, 293(5530):583-585, 2001.
-
(2001)
Science
, vol.293
, Issue.5530
, pp. 583-585
-
-
Helmuth, L.1
-
28
-
-
0001935493
-
Gene genealogies and the coalescent process
-
D. Futuyma and J. Antonovics, editors, Oxford University Press
-
R. R. Hudson. Gene genealogies and the coalescent process. In D. Futuyma and J. Antonovics, editors, Oxford surveys in evolutionary biology, volume 7, pages 1-44. Oxford University Press, 1990.
-
(1990)
Oxford Surveys in Evolutionary Biology
, vol.7
, pp. 1-44
-
-
Hudson, R.R.1
-
29
-
-
0034795550
-
Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
-
A. J. Jeffreys, L. Kauppi, and R. Neumann. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nature Genetics, 29(2):217-222, 2001.
-
(2001)
Nature Genetics
, vol.29
, Issue.2
, pp. 217-222
-
-
Jeffreys, A.J.1
Kauppi, L.2
Neumann, R.3
-
32
-
-
4944257625
-
Über die auflösung der gleichungen, auf welche man bei der Untersuchung der linearen Verteilung galvanischer ströme geführt wird
-
G. Kirchhoff. Über die auflösung der gleichungen, auf welche man bei der Untersuchung der linearen Verteilung galvanischer ströme geführt wird. Annalen für der Physik und der Chemie, 72:497-508, 1847.
-
(1847)
Annalen für der Physik und der Chemie
, vol.72
, pp. 497-508
-
-
Kirchhoff, G.1
-
33
-
-
18544381909
-
A high-resolution recombination map of the human genome
-
A. Kong, D. F. Gudbjartsson, J. Sainz, G. M. Jonsdottir, S. A. Gudjonsson, B. Richardsson, S. Sigurdardottir, J. Barnard, B. Hallbeck, G. Masson, A. Shlien, S. T. Palsson, M. L. Frigge, T. E. Thorgeirsson, J. R. Gulcher, and K. Stefansson. A high-resolution recombination map of the human genome. Nature Genetics, 31(3):241-247, 2002.
-
(2002)
Nature Genetics
, vol.31
, Issue.3
, pp. 241-247
-
-
Kong, A.1
Gudbjartsson, D.F.2
Sainz, J.3
Jonsdottir, G.M.4
Gudjonsson, S.A.5
Richardsson, B.6
Sigurdardottir, S.7
Barnard, J.8
Hallbeck, B.9
Masson, G.10
Shlien, A.11
Palsson, S.T.12
Frigge, M.L.13
Thorgeirsson, T.E.14
Gulcher, J.R.15
Stefansson, K.16
-
34
-
-
84943255398
-
SNPs problems, complexity and algorithms
-
G. Lancia, V. Bafna, S. Istrail, R. Lippert, and R. Schwartz. SNPs problems, complexity and algorithms. In Proceedings of the Ninth Annual European Symposium on Algorithms (ESA), pages 182-193, 2001.
-
(2001)
Proceedings of the Ninth Annual European Symposium on Algorithms (ESA)
, pp. 182-193
-
-
Lancia, G.1
Bafna, V.2
Istrail, S.3
Lippert, R.4
Schwartz, R.5
-
37
-
-
0036842635
-
Haplotype inference in random population samples
-
S. Lin, D. J. Cutler, M. E. Zwick, and A. Chakravarti. Haplotype inference in random population samples. American Journal of Human Genetics, 71:1129-1137, 2002.
-
(2002)
American Journal of Human Genetics
, vol.71
, pp. 1129-1137
-
-
Lin, S.1
Cutler, D.J.2
Zwick, M.E.3
Chakravarti, A.4
-
38
-
-
0036514657
-
Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem
-
R. Lippert, R. Schwartz, G. Lancia, and S. Istrail. Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Briefings in Bioinformatics, 3(1):23-31, 2002.
-
(2002)
Briefings in Bioinformatics
, vol.3
, Issue.1
, pp. 23-31
-
-
Lippert, R.1
Schwartz, R.2
Lancia, G.3
Istrail, S.4
-
39
-
-
0028913523
-
An E-M algorithm and testing strategy for multiple-locus haplotypes
-
J. C. Long, R. C. Williams, and M. Urbanek. An E-M algorithm and testing strategy for multiple-locus haplotypes. American Journal of Human Genetics, 56(2):799-810, 1995.
-
(1995)
American Journal of Human Genetics
, vol.56
, Issue.2
, pp. 799-810
-
-
Long, J.C.1
Williams, R.C.2
Urbanek, M.3
-
40
-
-
0038285034
-
Digital genotyping and haplotyping with polymerase colonies
-
R. Mitra, V. Butty, J. Shendure, B. R. Williams, D. E. Housman, and G. M. Church. Digital genotyping and haplotyping with polymerase colonies. Proceedings of the National Academy of Sciences, 100(10):5926-31, 2003.
-
(2003)
Proceedings of the National Academy of Sciences
, vol.100
, Issue.10
, pp. 5926-5931
-
-
Mitra, R.1
Butty, V.2
Shendure, J.3
Williams, B.R.4
Housman, D.E.5
Church, G.M.6
-
41
-
-
85060839506
-
In situ localized amplification and contact replication of many individual DNA molecules
-
R. Mitra and G. M. Church. In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Research, 27(e34):1-6, 1999.
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.E34
, pp. 1-6
-
-
Mitra, R.1
Church, G.M.2
-
42
-
-
0036138183
-
Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
-
T. Niu, Z. S. Qin, X. Xu, and J. S. Liu. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. American Journal of Human Genetics, 70:157-169, 2002.
-
(2002)
American Journal of Human Genetics
, vol.70
, pp. 157-169
-
-
Niu, T.1
Qin, Z.S.2
Xu, X.3
Liu, J.S.4
-
44
-
-
0035941029
-
Blocks of limited haplotype diversity revealed by high resolution scanning of human chromosome 21
-
N. Patil, A. J. Berno, D. A. Hinds, W. A. Barrett, J. M. Doshi, C. R. Hacker, C. R. Kautzer, D. H. Lee, C. Marjoribanks, D. P. McDonough, B. T. N. Nguyen, M. C. Norris, J. B. Sheehan, N. Shen, D. Stern, R. P. Stokowski, D. J. Thomas, M. O. Trulson, K. R. Vyas, K. A. Frazer, S. P. A. Fodor, and D. R. Cox. Blocks of limited haplotype diversity revealed by high resolution scanning of human chromosome 21. Science, 294:1719-1723, 2001.
-
(2001)
Science
, vol.294
, pp. 1719-1723
-
-
Patil, N.1
Berno, A.J.2
Hinds, D.A.3
Barrett, W.A.4
Doshi, J.M.5
Hacker, C.R.6
Kautzer, C.R.7
Lee, D.H.8
Marjoribanks, C.9
McDonough, D.P.10
Nguyen, B.T.N.11
Norris, M.C.12
Sheehan, J.B.13
Shen, N.14
Stern, D.15
Stokowski, R.P.16
Thomas, D.J.17
Trulson, M.O.18
Vyas, K.R.19
Frazer, K.A.20
Fodor, S.P.A.21
Cox, D.R.22
more..
-
45
-
-
84957010924
-
Practical algorithms and fixedparameter tractability for the single individual SNP haplotyping problem
-
R. Rizzi, V. Bafna, S. Istrail, and G. Lancia. Practical algorithms and fixedparameter tractability for the single individual SNP haplotyping problem. In Proceedings of the Second International Workshop on Algorithms in Bioinformatics (WABI), pages 29-43, 2002.
-
(2002)
Proceedings of the Second International Workshop on Algorithms in Bioinformatics (WABI)
, pp. 29-43
-
-
Rizzi, R.1
Bafna, V.2
Istrail, S.3
Lancia, G.4
-
46
-
-
52449147252
-
The complexity of reconstructing trees from qualitative characters and subtrees
-
M. A. Steel. The complexity of reconstructing trees from qualitative characters and subtrees. Journal of Classification, 9:91-116, 1992.
-
(1992)
Journal of Classification
, vol.9
, pp. 91-116
-
-
Steel, M.A.1
-
47
-
-
0035919656
-
Haplotype variation and linkage disequilibrium in 313 human genes
-
J. C. Stephens, J. A. Schneider, D. A. Tanguay, J. Choi, T. Acharya, S. E. Stanley, R. Jiang, C. J. Messer, A. Chew, J.-H. Han, J. Duan, J. L. Carr, M. S. Lee, B. Koshy, A. M. Kumar, G. Zhang, W. R. Newell, A. Windemuth, C. Xu, T. S. Kalbfleisch, S. L. Shaner, K. Arnold, V. Schulz, C. M. Drysdale, K. Nandabalan, R. S. Judson, G. Ruano, and G. F. Vovis. Haplotype variation and linkage disequilibrium in 313 human genes. Science, 293(5529):489-493, 2001.
-
(2001)
Science
, vol.293
, Issue.5529
, pp. 489-493
-
-
Stephens, J.C.1
Schneider, J.A.2
Tanguay, D.A.3
Choi, J.4
Acharya, T.5
Stanley, S.E.6
Jiang, R.7
Messer, C.J.8
Chew, A.9
Han, J.-H.10
Duan, J.11
Carr, J.L.12
Lee, M.S.13
Koshy, B.14
Kumar, A.M.15
Zhang, G.16
Newell, W.R.17
Windemuth, A.18
Xu, C.19
Kalbfleisch, T.S.20
Shaner, S.L.21
Arnold, K.22
Schulz, V.23
Drysdale, C.M.24
Nandabalan, K.25
Judson, R.S.26
Ruano, G.27
Vovis, G.F.28
more..
-
49
-
-
0242691208
-
A comparison of bayesian methods for haplotype reconstruction from population genotype data
-
M. Stephens and P. Donnelly. A comparison of bayesian methods for haplotype reconstruction from population genotype data. American Journal of Human Genetics, 73:1162-1169, 2003.
-
(2003)
American Journal of Human Genetics
, vol.73
, pp. 1162-1169
-
-
Stephens, M.1
Donnelly, P.2
-
50
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
M. Stephens, N. J. Smith, and P. Donnelly. A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68:978-989, 2001.
-
(2001)
American Journal of Human Genetics
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
51
-
-
0034913468
-
Perfect phylogenetic networks with recombination
-
L. Wang, K. Zhang, and L. Zhang. Perfect phylogenetic networks with recombination. Journal of Computational Biology, 8(1):69-78, 2001.
-
(2001)
Journal of Computational Biology
, vol.8
, Issue.1
, pp. 69-78
-
-
Wang, L.1
Zhang, K.2
Zhang, L.3
-
52
-
-
2942572999
-
Optimal step length em algorithm (OSLEM) for the estimation of haplotype frequency and its application in lipoprotein lipase genotyping
-
P. Zhang, H. Sheng, A. Morabia, and T. C. Gilliam. Optimal step length EM algorithm (OSLEM) for the estimation of haplotype frequency and its application in lipoprotein lipase genotyping. BMC Bioinformatics, 4(3), 2003.
-
(2003)
BMC Bioinformatics
, vol.4
, Issue.3
-
-
Zhang, P.1
Sheng, H.2
Morabia, A.3
Gilliam, T.C.4
|