메뉴 건너뛰기




Volumn 8, Issue , 2004, Pages 20-29

An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming

Author keywords

Branch and bound algorithm; Haplotyping; Integer linear programming; Missing data imputation; Pedigree analysis; Recombination

Indexed keywords

ALGORITHMS; COMPUTATIONAL COMPLEXITY; DATA REDUCTION; DNA; GENETIC ENGINEERING; LINEAR PROGRAMMING; OPTIMIZATION; PROBLEM SOLVING;

EID: 2442438861     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/974614.974618     Document Type: Conference Paper
Times cited : (28)

References (29)
  • 2
    • 0348226177 scopus 로고    scopus 로고
    • The haplotyping problem: An overview of computational models and solutions
    • P. Bonizzoni, G. Delia Vedova, R. Dondi, and J. Li. The haplotyping problem: an overview of computational models and solutions. J Comp Sci Tech, 18(6):675-688, 2003.
    • (2003) J Comp Sci Tech , vol.18 , Issue.6 , pp. 675-688
    • Bonizzoni, P.1    Delia Vedova, G.2    Dondi, R.3    Li, J.4
  • 4
    • 0025226585 scopus 로고
    • A program to draw pedigrees using LINKAGE or LINKSYS data files
    • D. Curtis. A program to draw pedigrees using LINKAGE or LINKSYS data files. Ann Hum Genet, 54:365-367, 1990.
    • (1990) Ann Hum Genet , vol.54 , pp. 365-367
    • Curtis, D.1
  • 6
    • 35248841124 scopus 로고    scopus 로고
    • Minimum recombinant haplotype configuration on tree pedigrees
    • K. Doi, J. Li, and T. Jiang. Minimum recombinant haplotype configuration on tree pedigrees. In Proc. WABI'03, pages 339-353, 2003.
    • (2003) Proc. WABI'03 , pp. 339-353
    • Doi, K.1    Li, J.2    Jiang, T.3
  • 7
    • 0037701054 scopus 로고    scopus 로고
    • Large scale reconstruction of haplotypes from genotype data
    • E. Eskin, E. Halperin, and R. M. Karp. Large scale reconstruction of haplotypes from genotype data. In Proc. RECOMB'03, pages 104-113, 2003.
    • (2003) Proc. RECOMB'03 , pp. 104-113
    • Eskin, E.1    Halperin, E.2    Karp, R.M.3
  • 8
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • L. Excoffier and M. Slatkin. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol, 12:921-927, 1995.
    • (1995) Mol Biol Evol , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 9
    • 18444369013 scopus 로고    scopus 로고
    • The structure of haplotype blocks in the human genome
    • S. B. Gabriel et al. The structure of haplotype blocks in the human genome. Science, 296(5576):2225-9, 2002.
    • (2002) Science , vol.296 , Issue.5576 , pp. 2225-2229
    • Gabriel, S.B.1
  • 10
    • 0036374329 scopus 로고    scopus 로고
    • Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions
    • D. Gusfield. Haplotyping as perfect phylogeny: conceptual framework and efficient solutions. In Proc. RECOMB'02, pages 166-175, 2002.
    • (2002) Proc. RECOMB'02 , pp. 166-175
    • Gusfield, D.1
  • 11
    • 0035958749 scopus 로고    scopus 로고
    • Genome research: Map of the human genome 3.0
    • L. Helmuth. Genome research: Map of the human genome 3.0. Science, 293(5530):583-585, 2001.
    • (2001) Science , vol.293 , Issue.5530 , pp. 583-585
    • Helmuth, L.1
  • 12
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature, 409(6822):860-921, 2001.
    • (2001) Nature , vol.409 , Issue.6822 , pp. 860-921
  • 13
    • 2442455116 scopus 로고    scopus 로고
    • Efficient inference of haplotypes from genotypes on a pedigree
    • J. Li and T. Jiang. Efficient inference of haplotypes from genotypes on a pedigree. J Bioinfo Comp Biol, 1(1):41-69, 2003.
    • (2003) J Bioinfo Comp Biol , vol.1 , Issue.1 , pp. 41-69
    • Li, J.1    Jiang, T.2
  • 14
    • 0037701006 scopus 로고    scopus 로고
    • Efficient rule-based haplotyping algorithms for pedigree data
    • J. Li and T. Jiang. Efficient rule-based haplotyping algorithms for pedigree data. In Proc. RECOMB'03, pages 197-206, 2003.
    • (2003) Proc. RECOMB'03 , pp. 197-206
    • Li, J.1    Jiang, T.2
  • 15
    • 0038715313 scopus 로고    scopus 로고
    • Haplotype reconstruction from SNP alignment
    • L. Li, J. H. Kim, and M. S. Waterman. Haplotype reconstruction from SNP alignment. In Proc. RECOMB'03, pages 207-216, 2003.
    • (2003) Proc. RECOMB'03 , pp. 207-216
    • Li, L.1    Kim, J.H.2    Waterman, M.S.3
  • 16
    • 0030711597 scopus 로고    scopus 로고
    • An algorithm for haplotype analysis
    • S. Lin and T. P. Speed. An algorithm for haplotype analysis. J Comput Biol. 4(4):535-46, 1997.
    • (1997) J Comput Biol. , vol.4 , Issue.4 , pp. 535-546
    • Lin, S.1    Speed, T.P.2
  • 17
    • 0036514657 scopus 로고    scopus 로고
    • Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem
    • R. Lippert, R. Schwartz, G. Lancia, and S. Istrail. Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Briefings in Bioinformatics, 3(1):23-31, 2002.
    • (2002) Briefings in Bioinformatics , vol.3 , Issue.1 , pp. 23-31
    • Lippert, R.1    Schwartz, R.2    Lancia, G.3    Istrail, S.4
  • 18
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • T. Niu, Z. S. Qin, X. Xu, and J. S. Liu. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet. 70(1):157-169, 2002.
    • (2002) Am J Hum Genet. , vol.70 , Issue.1 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 19
    • 0033814569 scopus 로고    scopus 로고
    • Zero-recombinant haplotyping: Applications to fine mapping using SNPs
    • J. R. O'Connell. Zero-recombinant haplotyping: applications to fine mapping using SNPs. Genet Epidemiol, 19 Suppl 1:S64-70, 2000.
    • (2000) Genet Epidemiol , vol.19 , Issue.SUPPL. 1
    • O'Connell, J.R.1
  • 20
    • 0038715314 scopus 로고    scopus 로고
    • Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples
    • I. Pe'er and J. S. Beckmann. Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples. In Proc. RECOMB'03, pages 237-246, 2003.
    • (2003) Proc. RECOMB'03 , pp. 237-246
    • Pe'er, I.1    Beckmann, J.S.2
  • 21
    • 0036097372 scopus 로고    scopus 로고
    • Minimum-recombinant haplotyping in pedigrees
    • D. Qian and L. Beckmann. Minimum-recombinant haplotyping in pedigrees. Am J Hum Genet, 70(6):1434-1445, 2002.
    • (2002) Am J Hum Genet , vol.70 , Issue.6 , pp. 1434-1445
    • Qian, D.1    Beckmann, L.2
  • 22
    • 0035025410 scopus 로고    scopus 로고
    • Transmission/disequilibrium test meets measured haplotype analysis: Family-based association analysis guided by evolution of haplotypes
    • H. Seltman, K. Roeder, and B.D. Devlin. Transmission/disequilibrium test meets measured haplotype analysis: family-based association analysis guided by evolution of haplotypes. Am J Hum Genet, 68(5):1250-1263, 2001.
    • (2001) Am J Hum Genet , vol.68 , Issue.5 , pp. 1250-1263
    • Seltman, H.1    Roeder, K.2    Devlin, B.D.3
  • 24
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • M. Stephens, N. J. Smith, and P. Donnelly. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet. 68(4):978-89, 2001.
    • (2001) Am J Hum Genet. , vol.68 , Issue.4 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 25
    • 0033992554 scopus 로고    scopus 로고
    • Haplotyping in pedigrees via a genetic algorithm
    • P. Tapadar, S. Ghosh, and P. P. Majumder. Haplotyping in pedigrees via a genetic algorithm. Hum Hered, 50(1):43-56, 2000.
    • (2000) Hum Hered , vol.50 , Issue.1 , pp. 43-56
    • Tapadar, P.1    Ghosh, S.2    Majumder, P.P.3
  • 26
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • J. C. Venter et al. The sequence of the human genome. Science, 291 (5507):1304-1351, 2001.
    • (2001) Science , vol.291 , Issue.5507 , pp. 1304-1351
    • Venter, J.C.1
  • 27
    • 0023581971 scopus 로고
    • A deductive method of haplotype analysis in pedigrees
    • E. M. Wijsman. A deductive method of haplotype analysis in pedigrees. Am J Hum Genet, 41(3):356-73, 1987.
    • (1987) Am J Hum Genet , vol.41 , Issue.3 , pp. 356-373
    • Wijsman, E.M.1
  • 29
    • 0041385677 scopus 로고    scopus 로고
    • Transmission/Disequilibrium test based on haplotype sharing for tightly linked markers
    • S. Zhang et al. Transmission/Disequilibrium test based on haplotype sharing for tightly linked markers. Am J Hum Genet, 73(3):566-579, 2003.
    • (2003) Am J Hum Genet , vol.73 , Issue.3 , pp. 566-579
    • Zhang, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.