Transcriptional regulation of the sulfate-starvation-induced gene sfnA by a σ54-dependent activator of Pseudomonas putida

Microbiology

Volumn 153, Issue 9, 2007, Pages 3091-3098

  Habe, Hiroshi ^a   Kouzuma, Atsushi ^b   Endoh, Takayuki ^b   Omori, Toshio ^c   Yamane, Hisakazu ^b   Nojiri, Hideaki ^b  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c SHIBAURA INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A DEHYDROGENASE; BACTERIAL PROTEIN; BETA GALACTOSIDASE; DIMETHYL SULFATE; PROTEIN SFNA; PROTEIN SFNAB; PROTEIN SFNB; PROTEIN SFNR; REGULATOR PROTEIN; SIGMA FACTOR RPON; SULFUR; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL SURVIVAL; BINDING SITE; CONTROLLED STUDY; GENE CLUSTER; GENE DELETION; GENE DISRUPTION; GENE EXPRESSION; NONHUMAN; OPERON; PRIORITY JOURNAL; PROTEIN FUNCTION; PSEUDOMONAS PUTIDA; REAL TIME POLYMERASE CHAIN REACTION; REPORTER GENE; TRANSCRIPTION REGULATION;

BACTERIAL PROTEINS; BASE SEQUENCE; BINDING SITES; GENE DELETION; GENE EXPRESSION REGULATION, BACTERIAL; HEAT-SHOCK RESPONSE; MOLECULAR SEQUENCE DATA; OPERON; PSEUDOMONAS PUTIDA; RNA POLYMERASE SIGMA 54; SULFATES; SULFHYDRYL COMPOUNDS; SULFIDES; TRANS-ACTIVATORS; TRANSCRIPTION, GENETIC;

PSEUDOMONAS PUTIDA;

EID: 34948822338     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2007/008151-0     Document Type: Article

References (30)

1. Arsene, C., Barnes, I., Becker, K. H., Schneider, W. F., Wallington, T. T., Mihalopoulos, N. & Patroescu-Klotz, I. V. (2002). Formation of methane sulfinic acid in the gas-phase: OH-radical initiated oxidation of dimethyl sulfoxide. Environ Sci Technol 36, 5155-5163.
2. Autry, A. R. & Fitzgerald, J. W. (1990). Sulfonate S: a major form of forest soil organic sulfur. Biol Fertil Soils 10, 50-56.
3. -) by OH radicals in aqueous medium. Atmos Environ 36, 4627-4634.
4. 54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol 5, 1281-1293.
5. Coppée, J.-Y., Auger, S., Turlin, E., Sekowska, A., Le Caer, J.-P., Labas, V., Vanger, V., Danchin, A. & Martin-Verstraete, I. (2001). Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study. Microbiology 147, 1631-1640.
6. Davison, J., Brunei, F., Phanopoulos, A., Prozzi, D. & Terpstra, P. (1992). Cloning and sequencing of Pseudomonas genes determining sodium dodecyl sulfate biodegradation. Gene 114, 19-24.
7. Delic-Attree, I., Toussaint B., Garin, J. & Vignais, P. M. (1997). Cloning, sequence and mutagenesis of the structural gene of Pseudomonas aeruginosa CysB, which can activate algD transcription. Mol Microbiol 24, 1275-1284.
8. Eichhorn, E., van der Ploeg, J. R. & Leisinger, T. (1999). Characterization of a two-component alkanesulfonate monooxygenase from Escherichia coli. J Biol Chem 274, 26639-26646.
9. Endoh, T., Kasuga, K, Horinouchi, M., Yoshida, T., Habe, H., Nojiri, H. & Omori, T. (2003a). Characterization and identification of genes essential for dimethyl sulfide utilization in Pseudomonas putida strain DS1. Appl Microbiol Biotechnol 62, 83-91.
10. 54-dependent regulator, SfnR, is essential for dimethyl sulfone metabolism of Pseudomonas putida strain DS1. Microbiology 149, 991-1000.
11. 54-dependent transcriptional activator SfhR regulates the expression of the Pseudomonas putida sfnFG operon responsible for dimethyl sulphone utilization. Mol Microbiol 55, 897-911.
12. Hummerjohann, J., Laudenbach, S., Rétey, J., Leisinger, T. & Kertesz, M. A. (2000). The sulfur-regulated arylsulfatase gene cluster of Pseudomonas aeruginosa, a new member of the cys regulon. J Bacteriol 182, 2055-2058.
13. Iwanicka-Nowicka, R., Zielak, A., Cook A. M., Thomas, M. S. & Hryniewicz, M. A. (2007). Regulation of sulfur assimilation pathways in Burkholderia cenocepacia: identification of transcription factors CysB and SsuR and their role in control of target genes. J Bacteriol 189, 1675-1688.
14. Kahnert, A., Vermeij, P., Wietek, C., James, C. P., Leisinger, T. & Kertesz, M. A. (2000). The ssu locus plays a key role in organosulfur metabolism in Pseudomonas putida S-313. J Bacteriol 182, 2869-2878.
15. Kahnert, A., Mirleau, P., Wait, R. & Kertesz, M. A. (2002). The LysR-type regulator SftR is involved in soil survival and sulphate ester metabolism in Pseudomonas putida. Environ Microbiol 4, 225-237.
16. Kertesz, M. A. (2000). Riding the sulfur cycle - metabolism of sulfonates and sulfate esters in gram-negative bacteria. FEMS Microbiol Rev 24, 135-175.
17. Kertesz, M. A. (2004). Metabolism of sulphur-containing organic compounds. In Pseudomonas, vol. 3, pp. 323-357. Edited by J.-L. Ramos. New York: Kluwer Academic/Plenum Publishers.
18. Kertesz, M. A., Leisinger, T. & Cook A. M. (1993). Proteins induced by sulfate limitation in Escherichia coli, Pseudomonas putida, or Staphylococcus aureus. I Bacteriol 175, 1187-1190.
19. Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
20. Minami, K. (1982). Volatilization of sulfur from paddy soils. Jpn Agric Res Q 15, 167-171.
21. Omori, T., Saiki, Y., Kasuga, K. & Kodama, T. (1995). Desulfurization of alkyl and aromatic sulfides and sulfonates by dibenzothiophene-desulfurizing Rhodococcus sp. strain SY I. Biosci Biotechnol Biochem 59, 1195-1198.
22. 54-promoters of the TOL plasmid of Pseudomonas putida. J Mol Biol 258, 562-574.
23. 54-dependent genes in Escherichia coli. Microbiol Mol Biol Rev 65, 422-444.
24. Sambrook J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
25. Sukchawalit, R., Battanaviboon, P., Sallabhan, R. & Mongkolsuk, S. (1999). Construction and characterization of regulated L-arabinose-inducible broad host range expression vectors in Xanthomonas. FEMS Microbiol Lett 181, 217-223.
26. Tropel, D. & van der Meer, J. R. (2002). Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters. J Bacteriol 184, 2914-2924.
27. van der Ploeg, J. R., Weiss, M. A., Sailer, E., Nashimoto, H., Salto, N., Kertesz, M. A. & Leisinger, T. (1996). Identification of sulfate starvation-regulated genes in Escherichia coli: a gene duster involved in the utilization of taurine as a sulfur source. J Bacteriol 178, 5438-5446.
28. van der Ploeg, J. R., Iwanicka-Nowicka, R., Bykowsky, T., Hryniewicz, M. M. & Leisinger, T. (1999). The Escherichia coli ssuEADCB gene duster is required for the utilization of sulfur from aliphatic sulfonates and is regulated by the transcriptional activator CbI. J Biol Chem 274, 29358-29365.
29. Vermeij, P. & Kertesz, M. A. (1999). Pathways of assimilative sulfur metabolism in Pseudomonas putida. J Bacteriol 181, 5833-5837.
30. Vermeij, P., Wietek, C., Kahnert, A., Wüest, T. & Kertesz, M. A. (1999). Genetic organization of sulfur-controlled aryl desulfonation in Pseudomonas putida S-313. Mol Microbiol 32, 913-926.