Diversity and evolutionary relationship of nucleotide binding site-encoding disease-resistance gene analogues in sweet potato (Ipomoea batatas Lam.)

Journal of Biosciences

Volumn 32, Issue 4, 2007, Pages 713-721

  Chen, Guanshui ^a   Pan, Daren ^a   Zhou, Yifei ^a   Lin, Sheng ^a   Ke, Xiangde ^a  

^a FUJIAN AGRICULTURE AND FORESTRY UNIVERSITY   (China)

Author keywords

Diversity; Nucleotide binding site; Resistance gene analogue; Sweet potato

Indexed keywords

GENOMIC DNA; TOLL LIKE RECEPTOR 1;

AMINO ACID; CULTIVAR; DISEASE RESISTANCE; DNA; EVOLUTION; GENE EXPRESSION; PHYLOGENETICS; TUBER;

ARTICLE; BIODIVERSITY; EVOLUTIONARY ADAPTATION; GENETIC CODE; GENETIC CONSERVATION; GENETIC RESISTANCE; NONHUMAN; NUCLEOTIDE BINDING SITE; NUCLEOTIDE SEQUENCE; PLANT GENETICS; POLYMERASE CHAIN REACTION; PROTEIN DOMAIN; PROTEIN ISOLATION; PROTEIN MOTIF; SWEET POTATO;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; DNA PRIMERS; EVOLUTION; GENES, PLANT; IPOMOEA; MOLECULAR SEQUENCE DATA; NUCLEOTIDES; PLANT DISEASES; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, AMINO ACID;

IPOMOEA BATATAS; LINUM USITATISSIMUM; LYCOPERSICON ESCULENTUM; NICOTIANA TABACUM; SOLANUM TUBEROSUM;

EID: 34848907963     PISSN: 02505991     EISSN: 02505991     Source Type: Journal    
DOI: 10.1007/s12038-007-0071-7     Document Type: Article

References (26)

1. Bayram Yuksel, Estill JC, Schulze S R and Paterson A H 2005 Organization and evolution of resistance gene analogs in peanut; Mol. Gen. Genomics 274 248-263
2. Deng Z, Huang S, Ling P, Chen C, Yu C, Webber C A, Moore G A and Gmitter F G 2000 Cloning and characterization of NBS-LRR class resistance-gene candidate sequence in citrus; Theor. Appl. Genet. 101 814-822
3. Dong J X, Dong H T and Li D B 2001 Recent advances in plant disease resistance genes; Acta Phytopathol. Sinica 31 1-9
4. Food and Agriculture Organization 2002 Production year book 2002, vol. 54 (Rome: Food and Agriculture Organization of the United Nations)
5. Guo J P and Pan D R 2002 PCR Detection of nematode resistance in sweet potato; Acta Agronomica Sinica 28 167-169
6. Hammond-Kosack K E and Jones J D G 1997 Plant disease resistance gene; Annu. Rev. Plant Mol. Biol. 48 575-607
7. Han D J, Cao L, Chen Y F and Li Z Q 2005 Molecular basis of interaction between disease resistance gene and avirulence gene; Acta Genet. Sinica 32 1319-1326
8. Hinchliffe D J, Lu Y Z, Potenza C, Segupta-Gopalan C and Cantrell R G 2005 Resistance gene analogue markers are mapped to homologous chromosomes in cultivated tetraploid cotton; Theor. Appl. Genet. 110 1074-1085
9. Irigoyen M L, Loarce Y, Fominaya A and Ferrer E 2004 Isolation and mapping of resistance gene analogs from Avena strigosa genome; Theor. Appl. Genet. 109 713-724
10. Kanazin V, Marek L F and Shoemaker R C 1996 Resistance gene analogs are conserved and clustered in soybean; Proc. Natl. Acad. Sci. USA 93 11746-11750
11. Kumar S, Tamura K and Nei M 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment; Brief. Bioinform. 5 150-163
12. Lee S Y, Seo J S, Rodriguez-Lanetty M and Lee D H 2003 Comparative analysis of superfamilies of NBS-encoding disease resistance gene analogs in cultivated and wild apple species; Mol. Gen. Genomics 269 101-108
13. Leeuwen H V, Garcia-Mas J, Coca M, Puigdomenech P and Monfort A 2005 Analysis of the melon genome in regions encompassing TIR-NBS-LRR resistance genes; Mol. Gen. Genomics 273 240-251
14. Leister D, Ballvora A, Salamini F and Gebhardt C 1996 A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants; Nat. Genet. 14 421-429
15. Luo M, Zhu Y L, Yu C, Wu Z W and Zou Y 2000 Cloning of the plant resistance genes and their structure and function; Hereditas 22 429-433
16. Martinez Zamora M G, Castagnaro A P and Diaz Ricci J C 2004 Isolation and diversity analysis of resistance gene analogues (RGAs) from cultivated and wild strawberries; Mol. Gen. Genomics 272 480-487
17. Meyers B C, Dickerman A W, Michelmore R W, Sivaramakrishnan S, Sobral B W and Young N D 1999 Plant disease resistance genes encode members of an ancient and diverse protein family with the nucleotide-binding superfamily; Plant J. 20 317-332
18. Noir S, Combes M C, Anthony F and Lashermes P 2001 Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees; Mol. Gen. Genomics 265 654-662
19. Pan Q, Wendel J and Fluhr R 2000 Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes; J. Mol. Evol. 50 203-213
20. Thompson J D, Higgins D G and Gibson T J 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice; Nucleic Acids Res. 22 4673-4680
21. Tu L L, Zhang X L, Zhu L F, Nie Y C and Guo X P 2003 Origin, diversity and evolution of NBS-type disease-resistance gene analogues in sea-island cotton; Acta Genet. Sinica 30 1071-1077
22. Wang S Q, Zhang D C, Li P, Wang X D, Li S G, Zhu L H and Zhai W X 2005 Cloning and analysis of a new NBS-LRR resistance gene family in rice; Acta Genet. Sinica 32 704-711
23. Xu Q, Wen X P and Deng X X 2005 Isolation of TIR NBS-LRR resistance gene analogues and identifi cation of molecular marker linked to a powdery mildew resistance locus in chestnut rose; Theor. Appl. Genet. 111 819-830
24. Yaish M W F, Saenz de Miera L E and Perez de la Vega M 2004 Isolation of a family of resistance gene analogue sequences of the nucleotide binding site (NBS) type from Lens species; Genome 47 650-659
25. Yi T Y, Xie B Y, Zhang B X and Gao B D 2002 Application of plant resistance gene analogs in cloning and mapping resistance genes; Biotechnol. Bull. 2 16-20
26. Yu Y G, Buss G R, Saghai and Maroof M A 1996 Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site; Proc. Natl. Acad. Sci. USA 93 11751-11756