Aestuariimicrobium kwangyangense gen. nov., sp nov., an LL-diaminopimelic acid-containing bacterium isolated from tidal flat sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 9, 2007, Pages 2114-2118

  Jung, Seo Youn ^a   Kim, Hee Sik ^a   Song, Jae Jun ^a   Lee, Seung Goo ^a   Oh, Tae Kwang ^a   Yoon, Jung Hoon ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DIAMINOPIMELIC ACID; DIESEL FUEL; FATTY ACID; GUANINE; MENAQUINONE; PEPTIDOGLYCAN; RNA 16S;

AESTUARIIMICROBIUM KWANGYANGENSE; ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; ENRICHMENT CULTURE; GENETIC SIMILARITY; GRAM POSITIVE BACTERIUM; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PROPIONIBACTERIACEAE; RNA SEQUENCE; SEDIMENT; TAXONOMY; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CATALASE; CELL WALL; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GASOLINE; GENES, RRNA; GEOLOGIC SEDIMENTS; HYDROCARBONS; KOREA; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHYLOGENY; PROPIONIBACTERIACEAE; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; VITAMIN K 2;

BACTERIA (MICROORGANISMS); COCCOIDEA; POSIBACTERIA; PROPIONIBACTERIACEAE;

EID: 34848893121     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64917-0     Document Type: Article

References (30)

1. Bae, H. S., Moe, W. M., Yan, J., Tiago, I., Da Costa, M. S. & Rainey, F. A. (2006). Brooklawnia cerclae gen. nov., sp. nov., a propionate-forming bacterium isolated from chlorosolvent-contaminated groundwater. Int J Syst Evol Microbiol 56, 1977-1983.
2. Cohen-Bazire, G., Sistrom, W. R. & Staniar, R. Y. (1957). Kinetic studies of pigment synthesis by nonsulfur purple bacteria. J Cell Comp Physiol 49, 25-68.
3. Collins, M. D., Lawson, P. A., Nikolaitchouk, N. & Falsen, E. (2000). Luteococcus peritonei sp. nov., isolated from the human peritoneum. Int J Syst Evol Microbiol 50, 179-181.
4. Collins, M. D., Hutson, R. A., Nikolaitchouk, N., Nyberg, A. & Falsen, E. (2003). Luteococcus sanguinis sp. nov., isolated from human blood. Int J Syst Evol Microbiol 53, 1889-1891.
5. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
6. Drews, G. (1983). Mikrobiologisches Praktikum, p. 11. Berlin: Springer.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Jung, S.-Y., Kang, S.-J., Lee, M.-H., Lee, S.-Y., Oh, T.-K. & Yoon, J.-H. (2005). Gaetbulibacter saemankumensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 55, 1845-1849.
9. Jung, S.-Y., Oh, T.-K. & Yoon, J.-H. (2006a). Colwellia aestuarii sp. nov., isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 56, 33-37.
10. Jung, S.-Y., Kim, H.-S., Song, J. J., Lee, S.-G., Oh, T.-K. & Yoon, J.-H. (2006b). Kribbia dieselivorans gen. nov., sp. nov., a novel member of the family Intrasporangiaceae. Int J Syst Evol Microbiol 56, 2427-2432.
11. Kim, I.-G., Lee, M.-H., Jung, S.-Y., Song, J. J., Oh, T.-K. & Yoon, J.-H. (2005). Exiguobacterium aestuarii sp. nov. and Exiguobacterium marinum sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55, 885-889.
12. Komagata, K. & Suzuki, K. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
13. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
14. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
15. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
16. Lim, J.-M., Jeon, C. O., Lee, J.-C., Song, S.-M., Kim, K.-Y. & Kim, C.-J. (2006). Marinimicrobium koreense gen. nov., sp. nov. and Marinimicrobium agarilyticum sp. nov., novel moderately halotolerant bacteria isolated from tidal flat sediment in Korea. Int J Syst Evol Microbiol 56, 653-657.
17. Maszenan, A. M., Saviour, R. J., Patel, B. K. C., Schumann, P. & Rees, G. N. (1999). Tessaracoccus bendigoensis gen. nov., sp. nov., a Gram-positive coccus occurring in regular packages or tetrads, isolated from activated sludge biomass. Int J Syst Bacteriol 49, 459-468.
18. Nakamura, K., Hiraishi, A., Yoshimi, Y., Kawaharasaki, M., Masuda, K. & Kamagate, Y. (1995). Microlunatus phosphovorus gen. nov., sp. nov., a new gram-positive polyphosphate-accumulating bacterium isolated from activated sludge. Int J Syst Bacteriol 45, 17-22.
19. Pitcher, D. G. & Collins, M. D. (1991). Phylogenetic analysis of some LL-diaminopimelic acid-containing coryneform. bacteria from human skin: Description of Propionibacterium innocuum sp. nov. FEMS Microbiol Lett 84, 295-300.
20. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, Newark, DE: MIDI Inc.
21. AL as Propionimicrobium lymphophilum comb. nov. Int J Syst Evol Microbiol 52, 1925-1927.
22. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
23. Tamura, T., Takeuchi, M. & Yokota, A. (1994). Luteococcus japonicus gen. nov., sp. nov., a new gram-positive coccus with LL -diaminopimelic acid in the cell wall. Int J Syst Bacteriol 44, 348-356.
24. Wayne, L. G., Brenner, D. J, Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
25. Yokota, A., Tamura, T., Takeuchi, M., Weiss, N. & Stackebrandt, E. (1994). Transfer of Propionibacterium innocuum Pitcher and Collins 1991 to Propioniferax gen. nov. as Propioniferax innocua comb. nov. Int J Syst Bacteriol 44, 579-582.
26. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
27. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rRNA sequences. Int J Syst Bacteriol 48, 187-194.
28. Yoon, J.-H., Kang, K. H. & Park, Y.-H. (2003). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449-454.
29. Yoon, J.-H., Kang, K. H. & Oh, T.-K. (2005). Erythrobacter luteolus sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 55, 1167-1170.
30. Yurkov, V, Stackebrandt, E., Holmes, A., Fuerst, J. A., Hugenholtz, P., Golecki, J., Gad'on, N., Gorlenko, V. M., Kompantseva, E. I. & Drews, G. (1994). Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. Int J Syst Bacteriol 44, 427-434.