-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W and Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
24644481914
-
Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response
-
Auchtung JM, Lee CA, Monson RE, Lehman AP and Grossman AD (2005) Regulation of a Bacillus subtilis mobile genetic element by intercellular signaling and the global DNA damage response. Proc Natl Acad Sci USA 102:12554-12559.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12554-12559
-
-
Auchtung, J.M.1
Lee, C.A.2
Monson, R.E.3
Lehman, A.P.4
Grossman, A.D.5
-
3
-
-
0242276676
-
Lateral gene transfer and the origins of prokaryotic groups
-
Boucher Y, Douady CJ, Papke RT, Walsh DA, Boudreau MER, Nesbø CL, Case RJ and Doolittle WF (2003) Lateral gene transfer and the origins of prokaryotic groups. Annu Rev Genet 37:283-328.
-
(2003)
Annu Rev Genet
, vol.37
, pp. 283-328
-
-
Boucher, Y.1
Douady, C.J.2
Papke, R.T.3
Walsh, D.A.4
Boudreau, M.E.R.5
Nesbø, C.L.6
Case, R.J.7
Doolittle, W.F.8
-
4
-
-
13444305296
-
The ProDom database of protein domain families: More emphasis on 3D
-
Bru C, Courcelle E, Carrere S, Beausse Y, Dalmar S and Kahn D (2005) The ProDom database of protein domain families: More emphasis on 3D. Nucleic Acids Res 33:212-215.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 212-215
-
-
Bru, C.1
Courcelle, E.2
Carrere, S.3
Beausse, Y.4
Dalmar, S.5
Kahn, D.6
-
5
-
-
0036947390
-
Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18
-
Calcutt MJ, Lewis MS and Wise KS (2002) Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18. J Bacteriol 184:6929-6941.
-
(2002)
J Bacteriol
, vol.184
, pp. 6929-6941
-
-
Calcutt, M.J.1
Lewis, M.S.2
Wise, K.S.3
-
6
-
-
27144463959
-
Biogenesis, architecture, and function of bacterial type IV secretion systems
-
Christie PJ, Atmakuri K, Krishnamoorthy V, Jakubowski S and Cascales E (2005) Biogenesis, architecture, and function of bacterial type IV secretion systems. Annu Rev Microbiol 59:451-485.
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 451-485
-
-
Christie, P.J.1
Atmakuri, K.2
Krishnamoorthy, V.3
Jakubowski, S.4
Cascales, E.5
-
7
-
-
15944382319
-
The Salmonella genomic island 1 is an integrative mobilizable element
-
Doublet B, Boyd D, Mulvey, MR and Cloeckaert A (2005) The Salmonella genomic island 1 is an integrative mobilizable element. Mol Microbiol 55:1911-1924.
-
(2005)
Mol Microbiol
, vol.55
, pp. 1911-1924
-
-
Doublet, B.1
Boyd, D.2
Mulvey, M.R.3
Cloeckaert, A.4
-
8
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright AJ, Van Dongen S and Ouzounis CA (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 30:1575-1584.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
9
-
-
0032910190
-
Site-specific integration of the conjugal Vibrio cholerae SXT element into prfC
-
Hochhut B and Waldor MK (1999) Site-specific integration of the conjugal Vibrio cholerae SXT element into prfC. Mol Microbiol 32:99-110.
-
(1999)
Mol Microbiol
, vol.32
, pp. 99-110
-
-
Hochhut, B.1
Waldor, M.K.2
-
10
-
-
0030900769
-
CTnscr94, a conjugative transposon found in enterobacteria
-
Hochhut B, Jahreis K, Lengeler JW and Schmid K (1997) CTnscr94, a conjugative transposon found in enterobacteria. J Bacteriol 179:2097-3102.
-
(1997)
J Bacteriol
, vol.179
, pp. 2097-3102
-
-
Hochhut, B.1
Jahreis, K.2
Lengeler, J.W.3
Schmid, K.4
-
11
-
-
0034780633
-
Molecular analysis of antibiotic resistance gene clusters in Vibrio cholerae O139-and O1 SXT constins
-
Hochhut B, Lotfi Y, Mazel D, Faruque SM, Woodgate R and Waldor MK (2001) Molecular analysis of antibiotic resistance gene clusters in Vibrio cholerae O139-and O1 SXT constins. Antimicrob Agents Chemother 45:2991-3000.
-
(2001)
Antimicrob Agents Chemother
, vol.45
, pp. 2991-3000
-
-
Hochhut, B.1
Lotfi, Y.2
Mazel, D.3
Faruque, S.M.4
Woodgate, R.5
Waldor, M.K.6
-
12
-
-
0242371471
-
Horizontal gene transfer accelerates genome innovation and evolution
-
Jain R, Rivera MC, Moore JE and Lake JA (2003) Horizontal gene transfer accelerates genome innovation and evolution Mol Biol Evol 20:1598-1602.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1598-1602
-
-
Jain, R.1
Rivera, M.C.2
Moore, J.E.3
Lake, J.A.4
-
13
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics analysis and sequence alignment
-
Kumar S, Tamura K and Nei M (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
14
-
-
21844434913
-
Evolutionary origins of genomic repertoires in bacteria
-
Lerat E, Daubin V, Ochman H and Moran NA (2005) Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3:130.
-
(2005)
PLoS Biol
, vol.3
, pp. 130
-
-
Lerat, E.1
Daubin, V.2
Ochman, H.3
Moran, N.A.4
-
16
-
-
14044276353
-
Suppression subtractive hybridization as a basis to assess Mycoplasma agalactiae and Mycoplasma bovis genomic diversity and species-specific sequences
-
Marenda MS, Sagne E, Poumarat F and Citti C (2005) Suppression subtractive hybridization as a basis to assess Mycoplasma agalactiae and Mycoplasma bovis genomic diversity and species-specific sequences. Microbiol 151:475-489.
-
(2005)
Microbiol
, vol.151
, pp. 475-489
-
-
Marenda, M.S.1
Sagne, E.2
Poumarat, F.3
Citti, C.4
-
17
-
-
33744760548
-
A new integrative conjugative element occurs in Mycoplasma agalactiae as chromosomal and free circular forms
-
Marenda M, Barbe V, Gourgues G, Mangenot S, Sagne E and Citti C (2006) A new integrative conjugative element occurs in Mycoplasma agalactiae as chromosomal and free circular forms. J Bacteriol 188:4137-4141.
-
(2006)
J Bacteriol
, vol.188
, pp. 4137-4141
-
-
Marenda, M.1
Barbe, V.2
Gourgues, G.3
Mangenot, S.4
Sagne, E.5
Citti, C.6
-
18
-
-
4444299144
-
TOPALi: Software for automatic identification of recombinant sequences within DNA multiple alignments
-
Milne I, Wright F, Rowe G, Marshall DF, Husmeier D and McGuire G (2004) TOPALi: Software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20:1806-1807.
-
(2004)
Bioinformatics
, vol.20
, pp. 1806-1807
-
-
Milne, I.1
Wright, F.2
Rowe, G.3
Marshall, D.F.4
Husmeier, D.5
McGuire, G.6
-
19
-
-
6044238249
-
The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis
-
Minion FC, Lefkowitz EJ, Madsen ML, Cleary BJ, Swartzell SM and Mahairas GG (2004) The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis. J Bacteriol 186:7123-7133.
-
(2004)
J Bacteriol
, vol.186
, pp. 7123-7133
-
-
Minion, F.C.1
Lefkowitz, E.J.2
Madsen, M.L.3
Cleary, B.J.4
Swartzell, S.M.5
Mahairas, G.G.6
-
20
-
-
13444282474
-
InterPro, progress and status in 2005
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, et al. (2005) InterPro, progress and status in 2005. Nucleic Acids Res 33:201-205.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 201-205
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bradley, P.7
Bork, P.8
Bucher, P.9
Cerutti, L.10
-
21
-
-
18244380086
-
Examining bacterial species under the specter of gene transfer and exchange
-
Ochman H, Lerat E and Daubin V (2005) Examining bacterial species under the specter of gene transfer and exchange. Proc Natl Acad Sci USA 102:6595-6599.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6595-6599
-
-
Ochman, H.1
Lerat, E.2
Daubin, V.3
-
22
-
-
1942535184
-
Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus
-
Pavlovic G, Burrus V, Gintz B, Decaris B and Guedon G (2004) Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology 4:759-74.
-
(2004)
Microbiology
, vol.4
, pp. 759-774
-
-
Pavlovic, G.1
Burrus, V.2
Gintz, B.3
Decaris, B.4
Guedon, G.5
-
23
-
-
0043072976
-
Lateral gene transfer in Salmonella
-
Porwollik S and McClelland M (2003) Lateral gene transfer in Salmonella. Microbes Infect 5:977-989.
-
(2003)
Microbes Infect
, vol.5
, pp. 977-989
-
-
Porwollik, S.1
McClelland, M.2
-
24
-
-
0031751325
-
Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13
-
Ravatn R, Studer S, Springael D, Zehnder AJ and van der Meer JR (1998) Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13. J Bacteriol 180:4360-4369.
-
(1998)
J Bacteriol
, vol.180
, pp. 4360-4369
-
-
Ravatn, R.1
Studer, S.2
Springael, D.3
Zehnder, A.J.4
van der Meer, J.R.5
-
25
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I and Bleasby A (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
26
-
-
0028889420
-
Conjugative transposons: An unusual and diverse set of integrated gene transfer elements
-
Salyers AA, Shoemaker NB, Stevens AM and Li LY (1995) Conjugative transposons: An unusual and diverse set of integrated gene transfer elements. Microbiol Rev 59:579-590.
-
(1995)
Microbiol Rev
, vol.59
, pp. 579-590
-
-
Salyers, A.A.1
Shoemaker, N.B.2
Stevens, A.M.3
Li, L.Y.4
-
28
-
-
34848877517
-
-
1ra ed. Goiânia, 44 pp
-
Sobestiansky J, Matos MPC and Hirose F (2001) Pneumonia Enzoótica Suína: Prevalência, Impacto Econômico, Fatores de Risco e Estratégia de Controle. 1ra ed. Goiânia, 44 pp.
-
(2001)
Pneumonia Enzoótica Suína: Prevalência, Impacto Econômico, Fatores de Risco e Estratégia de Controle
-
-
Sobestiansky, J.1
Matos, M.P.C.2
Hirose, F.3
-
29
-
-
0030925920
-
Pfam: A comprehensive database of protein domain families based on seed alignments
-
Sonnhammer EL, Eddy SR and Durbin R (1997) Pfam: A comprehensive database of protein domain families based on seed alignments. Proteins 28:405-420.
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
30
-
-
0032574728
-
Evolution of Rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene
-
Sullivan JT and Ronson CW (1998) Evolution of Rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. Proc Natl Acad Sci USA 95:5145-5149.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5145-5149
-
-
Sullivan, J.T.1
Ronson, C.W.2
-
31
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov RL, Galperin MY, Natale DA and Koonin EV (2000) The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res 28:33-36.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
32
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F and Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
33
-
-
23644457964
-
Swine and poultry pathogens: The complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae
-
Vasconcelos AT, Ferreira HB, Bizarro CV, Bonatto SL, Carvalho MO, Pinto PM, Almeida DF, Almeida LG, Almeida R, Alves-Filho L, et al. (2005) Swine and poultry pathogens: The complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. J Bacteriol 187:5568-5577.
-
(2005)
J Bacteriol
, vol.187
, pp. 5568-5577
-
-
Vasconcelos, A.T.1
Ferreira, H.B.2
Bizarro, C.V.3
Bonatto, S.L.4
Carvalho, M.O.5
Pinto, P.M.6
Almeida, D.F.7
Almeida, L.G.8
Almeida, R.9
Alves-Filho, L.10
-
34
-
-
23744515352
-
Mass spectrometry of the M. smegmatis proteome: Protein expression levels correlate with function, operons, and codon bias
-
Wang R, Prince JT and Marcotte EM (2005) Mass spectrometry of the M. smegmatis proteome: Protein expression levels correlate with function, operons, and codon bias. Genome Res. 8:1118-26.
-
(2005)
Genome Res
, vol.8
, pp. 1118-1126
-
-
Wang, R.1
Prince, J.T.2
Marcotte, E.M.3
-
35
-
-
0028928377
-
Identification and characterization of a Mycoplasma hyopneumoniae adhesin
-
Zhang Q, Young TF and Ross RF (1995) Identification and characterization of a Mycoplasma hyopneumoniae adhesin. Infect Immun 63:1013-1019.
-
(1995)
Infect Immun
, vol.63
, pp. 1013-1019
-
-
Zhang, Q.1
Young, T.F.2
Ross, R.F.3
-
36
-
-
0025393943
-
Effect of growth in cell cultures and strain on virulence of Mycoplasma hyopneumoniae for swine
-
Zielinski GC and Ross RF (1990) Effect of growth in cell cultures and strain on virulence of Mycoplasma hyopneumoniae for swine. Am J Vet Res 51:344-348.
-
(1990)
Am J Vet Res
, vol.51
, pp. 344-348
-
-
Zielinski, G.C.1
Ross, R.F.2
-
37
-
-
0027648726
-
Adherence of Mycoplasma hyopneumoniae to porcine ciliated respiratory tract cells
-
Zielinski GC and Ross RF (1993) Adherence of Mycoplasma hyopneumoniae to porcine ciliated respiratory tract cells. Am J Vet Res 54:1262-1269.
-
(1993)
Am J Vet Res
, vol.54
, pp. 1262-1269
-
-
Zielinski, G.C.1
Ross, R.F.2
|