The phylogeny of Oncorhynchus (Euteleostei: Salmonidae) based on behavioral and life history characters

Copeia

Volumn , Issue 3, 2007, Pages 520-533

  Esteve, Manu ^a   McLennan, Deborah A ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN ANALYSIS; BEHAVIORAL ECOLOGY; LIFE HISTORY TRAIT; MOLECULAR ANALYSIS; MORPHOLOGY; PHENOTYPE; PHYLOGENY; SALMONID; TOPOLOGY;

EUTELEOSTEI; ONCORHYNCHUS; ONCORHYNCHUS GORBUSCHA; ONCORHYNCHUS KETA; ONCORHYNCHUS KISUTCH; ONCORHYNCHUS MASOU; ONCORHYNCHUS MYKISS; ONCORHYNCHUS NERKA; ONCORHYNCHUS TSHAWYTSCHA; SALMO; SALMONIDAE; SALVELINUS; SALVELINUS NAMAYCUSH;

EID: 34548819623     PISSN: 00458511     EISSN: None     Source Type: Journal    
DOI: 10.1643/0045-8511(2007)2007[520:TPOOES]2.0.CO;2     Document Type: Article

References (62)

1. ARMSTRONG, R. H., AND J. E. MORROW. 1980. The Dolly Varden charr, Salvelinus malma, p. 99-140. In: Charrs: Salmonid Fishes of the Genus Salvelinus. E. K. Balon (ed.). Dr. W. Junk, The Hague, The Netherlands.
2. BAUMSTEIGER, J., D. HANKIN, AND E. J. LOUDENSLAGER. 2005. Genetic analyses of juvenile steelhead, coastal cutthroat trout, and their hybrids differ substantially from field identifications. Transactions of the American Fisheries Society 134:829-840.
3. BEHNKE, R. J. 1984. Organizing the diversity of the Arctic char complex, p. 3-21. In: Biology of the Arctic Charr. Proceedings of the International Symposium on Arctic Charr. L. Johnson and B. L. Burns (eds.). University of Manitoba Press, Winnipeg, Canada.
4. BETTLES, C. M., M. F. DOCKER, B. DUFOUR, AND D. D. HEATH. 2005. Hybridization dynamics between sympatric species of trout: loss of reproductive isolation. Journal of Evolutionary Biology 18: 1220-1233.
5. BROWN, K. H., S. J. PATTON, K. E. MARTIN, K. M. NICHOLS, R. ARMSTRONG, AND G. H. THORGAARD. 2004. Genetic analysis of interior Pacific Northwest Oncorhynchus mykiss reveals apparent ancient hybridization with westslope cutthroat trout. Transactions of the American Fisheries Society 133: 1078-1088.
6. CAVENDER, T. M. 1980. Systematics of Salvelinus from the North Pacific Basin, p. 295-322. In: Charrs: Salmonid Fishes of the Genus Salvelinus. E. K. BALON (ed.). Dr. W. Junk, The Hague, The Netherlands.
7. CHEVASSUS, B. 1979. Hybridization in salmonids: results and perspectives. Aquaculture 17:113-128.
8. CRACRAFT, J. 1983. Species concepts and speciation analysis, p. 159-187. In: Current Ornithology, Volume I. R. F. Johnston (ed.). Plenum Press, New York.
9. CRESPI, B. J., AND M. FULTON. 2004. Molecular systematics of Salmonidae: combined nuclear data yields a robust phylogeny. Molecular Phylogenetics and Evolution 31:658-679.
10. DOMANICO, M. J., AND R. B. PHILLIPS. 1995. Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) based on mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution 4:366-371.
11. DOMANICO, M. J., R. B. PHILLIPS, AND T. H. OAKLEY. 1997. Phylogenetic analysis of the Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences 54:1865-1872.
12. DOWLING, T. E., AND M. R. CHILDS. 1992. Impact of hybridization on a threatened trout of the Southwestern United States. Conservation Biology 6:355-364.
13. EPIFANIO, J., AND J. NIELSEN. 2001. The role of hybridization in the distribution, conservation and management of aquatic species. Reviews of Fish Biology and Fisheries 10:245-241.
14. EPIFANIO, J. M., M. HOOE, D. H. BUCK, AND D. P. PHILLIPS. 1999. Reproductive success and assortative mating among Pomoxis species and their hybrids. Transactions of the American Fisheries Society 128:104-120.
15. ESTEVE, M. 2005a. Observations of spawning behaviour in Salmoninae: Salmo, Oncorhynchus and Salvelinus. Reviews of Fish Biology and Fisheries 15:1-21.
16. ESTEVE, M. 2005b. Spawning behaviour of the Salmoninae subfamily members. A phylogenetic study. Unpubl. Ph.D. diss., University of Barcelona, Barcelona.
17. FABRICIUS, E., AND K. J. GUSTAFSON. 1954. Further aquarium observations of the charr Salmo alpinus. Report of the Institute of Freshwater Research (Drottingholm) 35:58-104.
18. FELINER, G. N., J. F. AGUILAR, AND J. A. ROSELLO. 2001. Can extensive reticulation and concerted evolution result in a cladistically structured molecular data set? Cladistics 17:301-312.
19. FITCH, W. M. 1971. Toward defining the course of evolution: minimal changes for a specific tree topology. Systematic Zoology 20:406-416.
20. FLEMING, I. A. 1998. Pattern and variability in the breeding system of Atlantic salmon (Salmo salar), with comparisons to other salmonids. Canadian Journal of Fisheries and Aquatic Sciences 55 (supplement):59-76.
21. FREYHOF, J., D. LIECKFELDT, C. PITRA, AND A. LUDWIG. 2005. Molecules and morphology: evidence for introgression of mitochondrial DNA in Dalmatian cyprinids. Molecular Phylogenetics and Evolution 37:347-354.
22. FUNK, V. A. 1985. Phylogenetic patterns and hybridization. Annals of the Missouri Botanical Garden 72:681-715.
23. GAUDEMAR, B. DE, AND E. BEALL. 1999. Reproductive behavioural sequences of single pairs of Atlantic salmon in an experimental stream. Animal Behaviour 57:1207-1217.
24. GRANT, G. C., B. VONDRACEK, AND P. W. SORENSEN. 2002. Spawning interactions between sympatric brown and brook trout may contribute to species replacement. Transactions of the American Fisheries Society 131:569-576.
25. GRANT, T., AND A. G. KLUGE. 2004. Transformation series as an ideographic character concept. Cladistics 20:23-31.
26. GROOT, C. 1996. Salmonid life histories, p. 97-230. In: Principles of Salmonid Culture. W. Pennell and A. Bruce (eds.). Elsevier, New York.
27. GUNN, J. M. 1995. Spawning behavior of lake trout: effects on colonization ability. Journal of Great Lakes Research 21 Supplement 1:323-329.
28. HALUPKA, K. C., M. D. BRYANT, M. F. WILLSON, AND F. H. EVEREST. 2000. Biological characteristics and population status of anadromous salmon in southeast Alaska. General Technical Report PNW-GTR-468. U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Portland, Oregon.
29. HEALEY, M. C., R. LAKE, AND S. G. HINCH. 2003. Energy expenditures during reproduction by sockeye salmon (Oncorhynchus nerha). Behaviour 140: 161-182.
30. HENDRY, A. P., AND S. C. STEARNS. 2004. Evolution Illuminated. Salmon and Their Relatives. Oxford University Press, Oxford.
31. HENNIG, W. 1966. Phylogenetic Systematics. University of Illinois Press, Urbana, Illinois.
32. KITANO, T., N. MATSUOKA, AND N. SAITOU. 1997. Phylogenetic relationships of the genus Oncorhynchus species inferred from nuclear and mitochondrial markers. Genes, Genetics and Systematics 72:25-34.
33. KLUGE, A. G. 1998. Total evidence or taxonomic congruence: cladistics or consensus classification. Cladistics 14:151-158.
34. KLUGE, A. G. 2003. The repugnant and the mature: atemporal similarity and historical identity in phylogenetic inference. Cladistics 19:356-368.
35. KROGIUS, F. V. 1981. The role of resident fish in the reproduction of anadromous sockeye salmon, Oncorhynchus nerka. Journal of Ichthyology 21: 14-21.
36. MADDISON, W. P., M. J. DONOGHUE, AND D. R. MADDISON. 1984. Outgroup analysis and parsimony. Systematic Zoology 33:83-103.
37. MARTIN, N. V., AND C. H. OLIVER. 1980. The lake charr, Salvelinus namaycush, p. 205-277. In: Charrs: Salmonid Fishes of the Genus Salvelinus. E. K. Balon (ed.). Dr. W. Junk, The Hague, The Netherlands.
38. MCLENNAN, D. A. In press. The sexual behavior of North American Freshweter Fish. In: Systematics, Historical Ecology, and North American Freshwater Fishes. Second Edition. R. Mayden (ed.). Elsevier Science.
39. OAKLEY, T. H., AND R. B. PHILLIPS. 1999. Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution 11:381-393.
40. OOHARA, I., K. SAWANO, AND T. OKAZAKI. 1997. Mitochondrial DNA sequence analysis of the masu salmon - phylogeny in the genus Oncorhynchus. Molecular Phylogenetics and Evolution 7:71-78.
41. OSINOV, A. G. 1999. Salmonid fishes of Salmo, Parasalmo and Oncorhynchus: genetic divergence, phylogeny, and classification. Journal of Ichthyology 39:571-587.
42. PHILLIPS, R. B., AND T. H. OAKLEY. 1997. Phylogenetic relationships among the Salmoninae based on their nuclear and mitochondrial sequences, p. 145-162. In: Molecular Systematics of Fishes. T. D. Kocher and C. A. Stepien (eds.). Academic Press, San Diego, California.
43. DE QUEIROZ, A., AND P. H. WIMBERGER. 1993. The utility of behavior for phylogeny estimation: levels of homoplasy in behavioral and morphological characters. Evolution 47:46-60.
44. ROGNON, X., AND R. GUYOMARD. 2003. Large extent of mitochondrial DNA transfer from Oreochromis aureus to O. niloticus in west Africa. Molecular Ecology 12:435-445.
45. ROSEN, D. E. 1979. Fishes from the uplands and intermontane basins of Guatemala: revisionary studies and comparative biogeography. Bulletin of the American Museum of Natural History 162:267-376.
46. ROSENFIELD, J. A., T. TODD, AND R. GREIL. 2000. Asymmetric hybridization and introgression between pink salmon and chinook salmon in the Laurentian Great Lakes. Transactions of the American Fisheries Society 129:670-679.
47. SHEDLOCK, A. M., J. D. PARKER, D. A. CRISPIN, T. W. PIETSCH, AND G. C. BURMER. 1992. Evolution of the salmonid mitochondrial control region. Molecular Phylogenetics and Evolution 1:179-192.
48. SIMON, R. C., AND R. E. NOBLE. 1968. Hybridization in Oncorhynchus (Salmonidae). I. Viability and inheritance in artificial crosses of chum and pink salmon. Transactions of the American Fisheries Society 97:109-118.
49. SMITH, G. R. 1992. Introgression in fishes: significance for paleontology, cladistics, and evolutionary rates. Systematic Biology 41:41-57.
50. SMITH, G. R., T. E. DOWLING, K. W. GOBALET, T. LUGASKI, D. K. SHIOZAWA, AND R. P. EVANS. 2002. Biogeography and timing of evolutionary events among Great Basin fishes, p. 175-234. In: Great Basin Aquatic Systems History. R. Hersher, D. B. Madsen, and D. R. Currey (eds.). Smithsonian Contributions in Earth Science Number 33.
51. SMITH, G. R., AND R. F. STEARLEY. 1989. The classification and scientific names of rainbow and cutthroat trouts. Fisheries 14:4-10.
52. STEARLEY, R. F. 1992. Historical ecology of Salmoninae, with special reference to Oncorhynchus, p. 622-658. In: Systematics, Historical Ecology, and North American Freshwater Fishes. R. L. Mayden (ed.). Stanford University Press, Stanford, California.
53. STEARLEY, R. F., AND G. R. SMITH. 1993. Phylogeny of the Pacific trouts and salmons (Oncorhynchus) and genera of the family Salmonidae. Transactions of the American Fisheries Society 122:1-33.
54. STRONG, E., AND D. LIPSCOMB. 1999. Character coding and inapplicable data. Cladistics 15:363-371.
55. SWOFFORD, D., AND W. P. MADDISON. 1992. Parsimony, character-state reconstructions, and evolutionary inferences, p. 186-223. In: Systematics, Historical Ecology, and North American Freshwater Fishes. R. L. Mayden (ed.). Stanford University Press, Stanford, California.
56. UTTER, F. 2000. Patterns of subspecific anthropogenic introgression in two salmonid genera. Reviews in Fish Biology and Fisheries 10:265-279.
57. UTTER, F. 2004. Population genetics, conservation and evolution in salmonids and other widely cultured fishes: some perspectives over six decades. Reviews in Fish Biology and Fisheries 14:125-144.
58. UTTER, F., F. W. ALLENDORF, AND H. HODGINS. 1973. Genetic variability and relationships in Pacific salmon and related trout based on protein variations. Systematic Zoology 22:257-270.
59. WEIGEL, D. E., J. T. PETERSEN, AND P. SPRUELL. 2002. A model using phenotypic characteristics to detect introgressive hybridization in wild westslope cut-throat trout and rainbow trout. Transactions of the American Fisheries Society 131:389-403.
60. WILEY, E. O., D. SIEGEL-CAUSEY, D. R. BROOKS, AND V. A. FUNK. 1991. The Compleat Cladist: A Primer of Phylogenetic Procedure. University of Kansas Museum of Natural History, Special Publication 19.
61. WILSON, M. F. 1997. Variation in salmonid life histories: patterns and perspectives. Research Paper PNW-RP-498. U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Portland, Oregon.
62. WILSON, M. V. H., AND G.-Q. LI. 1999. Osteology and systematic position of the Eocene salmonid Eosalmo driftwoodensis Wilson from western North America. Zoological Journal of the Linnean Society 125:279-311.