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Volumn 3, Issue 6, 2007, Pages 365-374

An mRNA-protein fusion at N-terminus for evolutionary protein engineering

Author keywords

C terminus; In vitro selection; In vitro virus; mRNA display; Non natural amino acid; T4 RNA Ligase

Indexed keywords

DNA; MESSENGER RNA; SINGLE STRANDED DNA; TRANSFER RNA;

EID: 34548810393     PISSN: 14492288     EISSN: None     Source Type: Journal    
DOI: 10.7150/ijbs.3.365     Document Type: Article
Times cited : (3)

References (38)
  • 1
    • 0031559943 scopus 로고    scopus 로고
    • In vitro virus: Bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro
    • Nemoto N., Miyamoto-Sato E., Husimi Y., Yanagawa H. In vitro virus: Bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro. FEBS Lett. 1997; 414: 405-408.
    • (1997) FEBS Lett , vol.414 , pp. 405-408
    • Nemoto, N.1    Miyamoto-Sato, E.2    Husimi, Y.3    Yanagawa, H.4
  • 2
    • 0030817279 scopus 로고    scopus 로고
    • RNA-peptide fusions for the in vitro selection of peptides and proteins
    • Roberts R.W., Szostak J.W. RNA-peptide fusions for the in vitro selection of peptides and proteins. Proc Natl Acad Sci USA. 1997; 94: 12297-12302.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12297-12302
    • Roberts, R.W.1    Szostak, J.W.2
  • 3
    • 0030974119 scopus 로고    scopus 로고
    • In vitro selection and evolution of functional proteins by using ribosome display
    • Hanes J., Plückthun A. In vitro selection and evolution of functional proteins by using ribosome display. Proc Natl Acad Sci USA. 1997; 94: 4937-4942.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 4937-4942
    • Hanes, J.1    Plückthun, A.2
  • 4
    • 0034284537 scopus 로고    scopus 로고
    • Efficient phage display of polypeptides fused to the carboxy-terminus of the M13 gene-3 minor coat protein
    • Fuh G., Sidhu S.S. Efficient phage display of polypeptides fused to the carboxy-terminus of the M13 gene-3 minor coat protein. FEBS Lett. 2000; 480: 231-234.
    • (2000) FEBS Lett , vol.480 , pp. 231-234
    • Fuh, G.1    Sidhu, S.S.2
  • 5
    • 0034733385 scopus 로고    scopus 로고
    • Design and evolution of artificial M13 coat proteins
    • Weiss G.A., Sidhu S.S. Design and evolution of artificial M13 coat proteins. J Mol Biol. 2000; 300: 213-219.
    • (2000) J Mol Biol , vol.300 , pp. 213-219
    • Weiss, G.A.1    Sidhu, S.S.2
  • 6
    • 0034242702 scopus 로고    scopus 로고
    • The interactions of peptides with the innate immune system studied with use of T7 phage peptide display
    • Sokoloff A.V., Bock I., Zhang G., Sebestyen M.G., Wolff J.A. The interactions of peptides with the innate immune system studied with use of T7 phage peptide display. Mol Ther. 2000; 2: 131-139.
    • (2000) Mol Ther , vol.2 , pp. 131-139
    • Sokoloff, A.V.1    Bock, I.2    Zhang, G.3    Sebestyen, M.G.4    Wolff, J.A.5
  • 7
    • 0034647505 scopus 로고    scopus 로고
    • Analysis of PDZ domain-ligand interactions using carboxyl-teminal phage display
    • Fuh G., Pisabarro M.T., Li Y., Quan C., Lasky L.A., Sidhu S.S. Analysis of PDZ domain-ligand interactions using carboxyl-teminal phage display. J Biol Chem. 2000; 275: 21486-21491.
    • (2000) J Biol Chem , vol.275 , pp. 21486-21491
    • Fuh, G.1    Pisabarro, M.T.2    Li, Y.3    Quan, C.4    Lasky, L.A.5    Sidhu, S.S.6
  • 10
    • 1442359479 scopus 로고    scopus 로고
    • Modified peptide selection in vitro by introduction of a protein-RNA interaction
    • Sawata S.Y., Taira K. Modified peptide selection in vitro by introduction of a protein-RNA interaction. Protein Eng. 2003; 16: 1115-1124.
    • (2003) Protein Eng , vol.16 , pp. 1115-1124
    • Sawata, S.Y.1    Taira, K.2
  • 11
    • 0032772534 scopus 로고    scopus 로고
    • STABLE: Protein-DNA fusion system for screening of combinatorial protein libraries in vitro
    • Doi N., Yanagawa H. STABLE: protein-DNA fusion system for screening of combinatorial protein libraries in vitro. FEBS Lett. 1999; 457: 227-230.
    • (1999) FEBS Lett , vol.457 , pp. 227-230
    • Doi, N.1    Yanagawa, H.2
  • 14
    • 5644247345 scopus 로고    scopus 로고
    • de Figueiredo P., Roberts R.L., Nester E.W. DARTs: A DNA-based in vitro polypeptide display technology. Proteomics. 2004; 4: 3128-3140.
    • de Figueiredo P., Roberts R.L., Nester E.W. DARTs: A DNA-based in vitro polypeptide display technology. Proteomics. 2004; 4: 3128-3140.
  • 15
    • 0000652848 scopus 로고
    • Biosynthetic site-specific incorporation of a non-natural amino acid into a polypeptide
    • Bain J.D., Diala E.S., Glabe C.G., Dix T.A., Chamberlin A.R. Biosynthetic site-specific incorporation of a non-natural amino acid into a polypeptide. J Am Chem Soc. 1989; 111: 8013-8014.
    • (1989) J Am Chem Soc , vol.111 , pp. 8013-8014
    • Bain, J.D.1    Diala, E.S.2    Glabe, C.G.3    Dix, T.A.4    Chamberlin, A.R.5
  • 16
    • 0024968835 scopus 로고
    • A general method for site-specific incorporation of unnatural amino acids into proteins
    • Noren C.J., Anthony-Cahill S.J., Griffith M.C., Schultz P.G. A general method for site-specific incorporation of unnatural amino acids into proteins. Science. 1989; 244: 182-188.
    • (1989) Science , vol.244 , pp. 182-188
    • Noren, C.J.1    Anthony-Cahill, S.J.2    Griffith, M.C.3    Schultz, P.G.4
  • 17
    • 0029968958 scopus 로고    scopus 로고
    • Incorporation of nonnatural amino acids into streptavidin through in vitro frame-shift suppression
    • Hohsaka T., Ashizuka Y., Murakami H., Sisido M. Incorporation of nonnatural amino acids into streptavidin through in vitro frame-shift suppression. J Am Chem Soc. 1996; 118: 9778-9779.
    • (1996) J Am Chem Soc , vol.118 , pp. 9778-9779
    • Hohsaka, T.1    Ashizuka, Y.2    Murakami, H.3    Sisido, M.4
  • 18
    • 0037189891 scopus 로고    scopus 로고
    • In vitro selection of mRNA display libraries containing an unnatural amino acid
    • Li S., Millward S., Roberts R. In vitro selection of mRNA display libraries containing an unnatural amino acid. J Am Chem Soc. 2002; 124: 9972-9973.
    • (2002) J Am Chem Soc , vol.124 , pp. 9972-9973
    • Li, S.1    Millward, S.2    Roberts, R.3
  • 19
    • 31644448060 scopus 로고    scopus 로고
    • Four-base codon mediated mRNA display to construct peptide libraries that contain multiple nonnatural amino acids
    • Muranaka N., Hohsaka T., Sisido M. Four-base codon mediated mRNA display to construct peptide libraries that contain multiple nonnatural amino acids. Nucleic Acids Res. 2006; 34: e4.
    • (2006) Nucleic Acids Res , vol.34
    • Muranaka, N.1    Hohsaka, T.2    Sisido, M.3
  • 20
    • 0035668536 scopus 로고    scopus 로고
    • Making contacts on a nucleic acid polymer
    • Rippe K. Making contacts on a nucleic acid polymer. Trends Biochem Sci. 2001; 26: 733-740.
    • (2001) Trends Biochem Sci , vol.26 , pp. 733-740
    • Rippe, K.1
  • 22
    • 0345531144 scopus 로고    scopus 로고
    • Using a solid-phase ribozyme aminoacylation system to reprogram the genetic code
    • Murakami H., Kourouklis D., Suga H. Using a solid-phase ribozyme aminoacylation system to reprogram the genetic code. Chem Biol. 2003; 10: 1077-1084.
    • (2003) Chem Biol , vol.10 , pp. 1077-1084
    • Murakami, H.1    Kourouklis, D.2    Suga, H.3
  • 24
    • 17544399298 scopus 로고    scopus 로고
    • Psoralen photo-crosslinked mRNA-puromycin conjugates: A novel template for the rapid and facile preparation of mRNA-protein fusions
    • Kurz M., Gu K., Lohse P.A. Psoralen photo-crosslinked mRNA-puromycin conjugates: a novel template for the rapid and facile preparation of mRNA-protein fusions. Nucleic Acids Res. 2000; 28: e83.
    • (2000) Nucleic Acids Res , vol.28
    • Kurz, M.1    Gu, K.2    Lohse, P.A.3
  • 25
    • 0036452678 scopus 로고    scopus 로고
    • An efficient ligation method in the making of an in vitro virus for in vitro protein evolution
    • Tabuchi I., Soramoto S., Suzuki M., Nishigaki K., Nemoto N., Husimi Y. An efficient ligation method in the making of an in vitro virus for in vitro protein evolution. Biol Proced Online. 2002; 4: 49-54.
    • (2002) Biol Proced Online , vol.4 , pp. 49-54
    • Tabuchi, I.1    Soramoto, S.2    Suzuki, M.3    Nishigaki, K.4    Nemoto, N.5    Husimi, Y.6
  • 26
    • 0035941061 scopus 로고    scopus 로고
    • An in vitro DNA virus for in vitro protein evolution
    • Tabuchi I., Soramoto S., Nemoto N., Husimi Y. An in vitro DNA virus for in vitro protein evolution. FEBS Lett. 2001; 508: 309-312.
    • (2001) FEBS Lett , vol.508 , pp. 309-312
    • Tabuchi, I.1    Soramoto, S.2    Nemoto, N.3    Husimi, Y.4
  • 28
    • 0042251385 scopus 로고
    • Enzymatic synthesis of sequencing primers based on a library of tetramers
    • Kinoshita Y., Nishigaki K., Husimi Y. Enzymatic synthesis of sequencing primers based on a library of tetramers. Chem Express. 1992; 7: 149-152.
    • (1992) Chem Express , vol.7 , pp. 149-152
    • Kinoshita, Y.1    Nishigaki, K.2    Husimi, Y.3
  • 29
    • 0037077562 scopus 로고    scopus 로고
    • NMR study of 100kDa HCV IRES RNA using segmental isotope labeling
    • Kim I., Lukavsky P.J., Puglisi J.D. NMR study of 100kDa HCV IRES RNA using segmental isotope labeling. J Am Chem Soc. 2002; 124: 9338-9339.
    • (2002) J Am Chem Soc , vol.124 , pp. 9338-9339
    • Kim, I.1    Lukavsky, P.J.2    Puglisi, J.D.3
  • 30
    • 1542365201 scopus 로고    scopus 로고
    • A universal method to produce in vitro transcripts with homogeneous 3′ ends
    • Schurer H., Lang K., Schuster J., Morl M. A universal method to produce in vitro transcripts with homogeneous 3′ ends. Nucleic Acids Res. 2002; 30: e56.
    • (2002) Nucleic Acids Res , vol.30
    • Schurer, H.1    Lang, K.2    Schuster, J.3    Morl, M.4
  • 31
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro S.W., Joyce G.F. A general purpose RNA-cleaving DNA enzyme. Proc Natl Acad Sci USA. 1997; 94: 4262-4266.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 32
    • 0034047698 scopus 로고    scopus 로고
    • Using DNAzyme to cut, process, and map RNA molecules for structural studies or modification
    • Pyle A.M., Chu V.T., Jankowsky E., Boudvillain M. Using DNAzyme to cut, process, and map RNA molecules for structural studies or modification. Methods Enzymol. 2000; 317: 140-146.
    • (2000) Methods Enzymol , vol.317 , pp. 140-146
    • Pyle, A.M.1    Chu, V.T.2    Jankowsky, E.3    Boudvillain, M.4
  • 33
    • 0020164793 scopus 로고
    • The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction
    • Romaniuk E., McLaughlin L.W., Neilson T., Romaniuk P.J. The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction. Eur J Biochem. 1982; 125: 639-643.
    • (1982) Eur J Biochem , vol.125 , pp. 639-643
    • Romaniuk, E.1    McLaughlin, L.W.2    Neilson, T.3    Romaniuk, P.J.4
  • 34
    • 0017889065 scopus 로고
    • Enzymatic oligoribonucleotide synthesis with T4 RNA ligase
    • England T.E., Uhlenbeck O.C. Enzymatic oligoribonucleotide synthesis with T4 RNA ligase. Biochem. 1978; 17: 2069-2076.
    • (1978) Biochem , vol.17 , pp. 2069-2076
    • England, T.E.1    Uhlenbeck, O.C.2
  • 35
    • 0034687806 scopus 로고    scopus 로고
    • RNA-catalyzed CoA NAD, and FAD synthesis from phosphopantetheine NMN, and FMN
    • Huang F., Bugg C.W., Yarus M. RNA-catalyzed CoA NAD, and FAD synthesis from phosphopantetheine NMN, and FMN. Biochem. 2000; 39: 15548-15555.
    • (2000) Biochem , vol.39 , pp. 15548-15555
    • Huang, F.1    Bugg, C.W.2    Yarus, M.3
  • 36
    • 0033550501 scopus 로고    scopus 로고
    • Efficient incorporation of nonnatural amino acids with large aromatic group into streptavidin in in vitro protein synthesizing systems
    • Hohsaka T., Kajihara D., Ashizuka Y., Murakami H. and Sisido M. Efficient incorporation of nonnatural amino acids with large aromatic group into streptavidin in in vitro protein synthesizing systems. J Am Chem Soc. 1999; 121: 34-40.
    • (1999) J Am Chem Soc , vol.121 , pp. 34-40
    • Hohsaka, T.1    Kajihara, D.2    Ashizuka, Y.3    Murakami, H.4    Sisido, M.5
  • 37
    • 0142150126 scopus 로고    scopus 로고
    • Incorporation of fluorescently labeled nonnatural amino acids into proteins in an E.coli in vitro translation system
    • Hohsaka T., Abe R., Shiraga K. and Sisido M. Incorporation of fluorescently labeled nonnatural amino acids into proteins in an E.coli in vitro translation system. Nucleic Acids Research Supplement 2003; 3: 271-272.
    • (2003) Nucleic Acids Research Supplement , vol.3 , pp. 271-272
    • Hohsaka, T.1    Abe, R.2    Shiraga, K.3    Sisido, M.4
  • 38
    • 33646044708 scopus 로고    scopus 로고
    • A highly flexible tRNA acylation method for non-natural polypeptide synthesis
    • Murakami H., Ohta A., Ashigai H. and Suga H. A highly flexible tRNA acylation method for non-natural polypeptide synthesis. Nature Methods. 2006; 3: 357-359.
    • (2006) Nature Methods , vol.3 , pp. 357-359
    • Murakami, H.1    Ohta, A.2    Ashigai, H.3    Suga, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.